Non-Coding RNA Search

Ss1.1-Utr1-UTR010070A10.5

Sequence:


               
               TGGAAGCACAGGCCGGGTGTGCGGCAGTGGGCCACGGATGCAGTCGCGTACTGGGACGTG
CAAGTGGCGGGCCTCTCTGAAGCGGTCCAAGATCCTGCATATGGCACTGATGGGGACTTC
CGACCCCTCCGGAGAGGATGAGGCCAGCCAGGAGAAGCCCTTTGTGCTGCGGGCACTGCA
GATCGCATTGGTAGTCTCTCTCTACTGGGTCACGTCCATCTCCATGGTGTTCCTTAACAA
GTACCTGCTGGACAGCCCCTCCTTGCAGCTGGACACCCCCATCTTCGTCACCTTCTACCA
GTGCCTGGTGACGGCGCTGCTGTGCAAGGGCCTCAGCACACTGGCCACCTGCTGGCCTGG
TGCCGTGGACTTCCCCACCCTGCACCTGGACCTCAGGGTGGCGCGCAGCATCCTGCCCCT
GTCGGTGGTCTTCATTGGCATGATCACCTTCAACAACCTCTGCCTCAAGTATGTGGGCGT
GGCCTTCTACAACGTGGGCCGCTCGCTCACCACCGTCTTCAATGTGCTGCTCTCCTACCT
GCTGCTCAAGCAAACCACGTCCTTCTATGCCTTGCTCACCTGCGGCACCATCATCGGCGG
CTTCTGGCTTGGTGTGGACCAGGAGGGCGCAGAGGGTACCCTGTCTTGGACGGGCACCGT
CTTCGGCGTGCTCGCCAGCCTGTGCGTGTCGCTCAACGCCATCTACACCAAGAAGGTGCT
GCCGGCGGTGGATGGCAGCATCTGGCGCCTGACCTTCTACAACAACGTCAACGCCTGCAT
CCTCTTCTTGCCCCTGCTCCTGCTGCTGGGGGAGCTCCGGGCGCTCCACCACTTCCCCCT
GCTGACCAGCGCCCACTTCTGGGGCATGATGACGCTGGGCGGCCTGTTTGGCTTTGCCAT
TGGCTACGTGACAGGACTGCAGATCAAGTTCACCAGTCCCCTGACCCACAATGTTTCTGG
CACAGCCAAAGCCTGTGCCCAGACGGTGCTGGCCGTCCTCTACTACGAGGACACCAAGAG
CTTCCTCTGGTGGGCGAGCAACATGATGGTGCTGGGGGGCTCTTTCGCCTACACCTGGGT
CCGGGGCTGGGAGATGAAGACTCAGGAGGACCCCAACCCCAAGGAGAGCGAGAAGAGTAC
CATGGAGGTGTGAGCTTCCCTGGGGAGCCTGGGATGGCCCGGCCCGGGGACAGTGCCCAC
GAAGGCAGTGAAGGTGTCTCACTGGACCCAGAGACGGTGGCCTGACATTCCCTGCTGGGA
ATCTGGTGGTTGAAAGGGAACCAGTGTTTATGAGTGATGTCAGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGCACAGGCCGGGTGTGCGGCAGTGGGCCACGGATGCAGTCGCGTACTGGGACGTG
CAAGTGGCGGGCCTCTCTGAAGCGGTCCAAGATCCTGCATATGGCACTGATGGGGACTTC
CGACCCCTCCGGAGAGGATGAGGCCAGCCAGGAGAAGCCCTTTGTGCTGCGGGCACTGCA
GATCGCATTGGTAGTCTCTCTCTACTGGGTCACGTCCATCTCCATGGTGTTCCTTAACAA
GTACCTGCTGGACAGCCCCTCCTTGCAGCTGGACACCCCCATCTTCGTCACCTTCTACCA
GTGCCTGGTGACGGCGCTGCTGTGCAAGGGCCTCAGCACACTGGCCACCTGCTGGCCTGG
TGCCGTGGACTTCCCCACCCTGCACCTGGACCTCAGGGTGGCGCGCAGCATCCTGCCCCT
GTCGGTGGTCTTCATTGGCATGATCACCTTCAACAACCTCTGCCTCAAGTATGTGGGCGT
GGCCTTCTACAACGTGGGCCGCTCGCTCACCACCGTCTTCAATGTGCTGCTCTCCTACCT
GCTGCTCAAGCAAACCACGTCCTTCTATGCCTTGCTCACCTGCGGCACCATCATCGGCGG
CTTCTGGCTTGGTGTGGACCAGGAGGGCGCAGAGGGTACCCTGTCTTGGACGGGCACCGT
CTTCGGCGTGCTCGCCAGCCTGTGCGTGTCGCTCAACGCCATCTACACCAAGAAGGTGCT
GCCGGCGGTGGATGGCAGCATCTGGCGCCTGACCTTCTACAACAACGTCAACGCCTGCAT
CCTCTTCTTGCCCCTGCTCCTGCTGCTGGGGGAGCTCCGGGCGCTCCACCACTTCCCCCT
GCTGACCAGCGCCCACTTCTGGGGCATGATGACGCTGGGCGGCCTGTTTGGCTTTGCCAT
TGGCTACGTGACAGGACTGCAGATCAAGTTCACCAGTCCCCTGACCCACAATGTTTCTGG
CACAGCCAAAGCCTGTGCCCAGACGGTGCTGGCCGTCCTCTACTACGAGGACACCAAGAG
CTTCCTCTGGTGGGCGAGCAACATGATGGTGCTGGGGGGCTCTTTCGCCTACACCTGGGT
CCGGGGCTGGGAGATGAAGACTCAGGAGGACCCCAACCCCAAGGAGAGCGAGAAGAGTAC
CATGGAGGTGTGAGCTTCCCTGGGGAGCCTGGGATGGCCCGGCCCGGGGACAGTGCCCAC
GAAGGCAGTGAAGGTGTCTCACTGGACCCAGAGACGGTGGCCTGACATTCCCTGCTGGGA
ATCTGGTGGTTGAAAGGGAACCAGTGTTTATGAGTGATGTCAGAAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8SPJ3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8SPJ3_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               875-1189, + strand, RNAz p=0.87863

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               875-1189, + strand, RNAz p=0.87863

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               596-1308, gnl|bosTau2|chr15 (47648901-47649616)
               

               
               596-1308, gnl|Hg17|chr11 (45788902-45789681)
               

               
               596-1308, gnl|Mm7|chr2 (92305491-92304772)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               596-1308, gnl|bosTau2|chr15 (47648901-47649616)
               

               
               596-1308, gnl|Hg17|chr11 (45788902-45789681)
               

               
               596-1308, gnl|Mm7|chr2 (92305491-92304772)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cga (0.279096)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	596-1308, gnl\|bosTau2\|chr15 (47648901-47649616)
	596-1308, gnl\|Hg17\|chr11 (45788902-45789681)
	596-1308, gnl\|Mm7\|chr2 (92305491-92304772)