Ss1.1-Utr1-UTR010070H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTTCTCGCCCGCCGCACCCGGGCCGGGCACAGATCCCCGCCGCTCGGACCATGGCTGC AGCCGCCTTGAGGCAGATTTGGGCCCGAAAATTTCTCCCTGTTCCTTGGCTTCTGTGTGG TCCCCGAAGATATGCCTCATCCAGCTTCAAGGCTGCCGACCTGCAGCTGGAAATGACACG GGAGCCTCATAAGAAGCCTGACCCCAGCGAGTGCCTCCTGTTTGGGAAGACATTCACAGA CCACATGCTGATGGTGGAATGGAACATGGAGAAGGGCTGGGGCCGGCCCCGAATCCAGCC CTTCCAGAACCTCACGCTGCACCCAGCCTGCTCGGCTCTCCACTACTCCCTACAGCTCTT TGAGGGCCTGAAGGCGTACAAAGGCGGGGACCAGCGCGTGCGCCTCTTCCGACCTTGGCT CAACATGGACCGCATGCTGCGCTCGGCCCTGCGCCTCTGCCTGCCGAGTTTCGACAAGGT CGAGTTGCTGGAGTGCATCCGCCGGCTGGTGGAGGTGGACCGGGACTGGGTTCCTGACAG TGCCGGCACCAGCCTTTACGTGCGGCCGGTGCTCATCGGGAACGAGCCCTCCCTTGGAGT GGGCAGCCCCACGCACGCCCTCCTGTACGTCATCCTCTGCCCGGTGGGCGCCTACTTCCC TGGAGAGGCCTTGAGCCCTGTCTCCCTCCTGGCTGACCCATCATTCATCCGGGCCTGGGT GGGCGGGGTCGGCGACTGCAAAATCGGGGGGAATTACGGGCCCACCGTGTTTGTGCAGAA GGAGGCAAAAAAAAAGGGCTGTGAGCAGGTGCTCTGGCTGTACGGGCCTGATCACGAGCT CACCGAGGCGGGTACCATGAACATCTTTGTCTTCTGGACCCACGAGGATGGGGCGCTGGA GCTGGTGACCCCCGCCCTGGACGGCATCATCCTGCCGGGAGTCGTCAGACAGAGTCTGCT GGACCTGGCGCGGACCTGGGGCGAGTTCCGGGTGACTGAGCGTAAGATGACCATGAACGA GTTCCTGCGGGCCCTGGAGCACGGCCGGGTTCGAGAAGTCTTTGGCTCAGGCACCGCTTG CCAGGTCTGCCCCGTGCACCGAATCCTGTACCAAGGCAAGTTCCTCCACATTCCCACCAT GGAAAATGGGCCTGAGCTGATCCTCCGCTTCTATAACGAGCTGAAGATGATCCAGTACGG AACAAAAGCCCACGAGTGGATGCTCCAGGTGTGACGCTATGGACTGTGCGCGATCACTCC AGGGATCCAATGACCTGTAGCATCCAGTCCCTGTTGAACCTTCGCCTCCATACCAATGAC TCACCTGAAGTGCAATATGAAATAGAAAGAGGGATGGGGCGCGGGGACGGGGTGCCTGGG GCTCCAGCACCCCCACATTTCACTCCCAAAGCCATAAGGGCCCGATCCAGGTGTCTTGGC CCCTAGCCCCACCTCTCAGGCCTTGGGGACCCGGACTCCCCGCTGCTCCATGCTGTGGGG TCAATCTTTGACCCCAACTCTGCATCTCCATTCTCAAGCCGAATCTCCTGGTGCTGCCGT TGACCTTTTTTTTCTTGCTGCAGTTTTGAAATAAAATGCCAAAGAACAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTTCTCGCCCGCCGCACCCGGGCCGGGCACAGATCCCCGCCGCTCGGACCATGGCTGC AGCCGCCTTGAGGCAGATTTGGGCCCGAAAATTTCTCCCTGTTCCTTGGCTTCTGTGTGG TCCCCGAAGATATGCCTCATCCAGCTTCAAGGCTGCCGACCTGCAGCTGGAAATGACACG GGAGCCTCATAAGAAGCCTGACCCCAGCGAGTGCCTCCTGTTTGGGAAGACATTCACAGA CCACATGCTGATGGTGGAATGGAACATGGAGAAGGGCTGGGGCCGGCCCCGAATCCAGCC CTTCCAGAACCTCACGCTGCACCCAGCCTGCTCGGCTCTCCACTACTCCCTACAGCTCTT TGAGGGCCTGAAGGCGTACAAAGGCGGGGACCAGCGCGTGCGCCTCTTCCGACCTTGGCT CAACATGGACCGCATGCTGCGCTCGGCCCTGCGCCTCTGCCTGCCGAGTTTCGACAAGGT CGAGTTGCTGGAGTGCATCCGCCGGCTGGTGGAGGTGGACCGGGACTGGGTTCCTGACAG TGCCGGCACCAGCCTTTACGTGCGGCCGGTGCTCATCGGGAACGAGCCCTCCCTTGGAGT GGGCAGCCCCACGCACGCCCTCCTGTACGTCATCCTCTGCCCGGTGGGCGCCTACTTCCC TGGAGAGGCCTTGAGCCCTGTCTCCCTCCTGGCTGACCCATCATTCATCCGGGCCTGGGT GGGCGGGGTCGGCGACTGCAAAATCGGGGGGAATTACGGGCCCACCGTGTTTGTGCAGAA GGAGGCAAAAAAAAAGGGCTGTGAGCAGGTGCTCTGGCTGTACGGGCCTGATCACGAGCT CACCGAGGCGGGTACCATGAACATCTTTGTCTTCTGGACCCACGAGGATGGGGCGCTGGA GCTGGTGACCCCCGCCCTGGACGGCATCATCCTGCCGGGAGTCGTCAGACAGAGTCTGCT GGACCTGGCGCGGACCTGGGGCGAGTTCCGGGTGACTGAGCGTAAGATGACCATGAACGA GTTCCTGCGGGCCCTGGAGCACGGCCGGGTTCGAGAAGTCTTTGGCTCAGGCACCGCTTG CCAGGTCTGCCCCGTGCACCGAATCCTGTACCAAGGCAAGTTCCTCCACATTCCCACCAT GGAAAATGGGCCTGAGCTGATCCTCCGCTTCTATAACGAGCTGAAGATGATCCAGTACGG AACAAAAGCCCACGAGTGGATGCTCCAGGTGTGACGCTATGGACTGTGCGCGATCACTCC AGGGATCCAATGACCTGTAGCATCCAGTCCCTGTTGAACCTTCGCCTCCATACCAATGAC TCACCTGAAGTGCAATATGAAATAGAAAGAGGGATGGGGCGCGGGGACGGGGTGCCTGGG GCTCCAGCACCCCCACATTTCACTCCCAAAGCCATAAGGGCCCGATCCAGGTGTCTTGGC CCCTAGCCCCACCTCTCAGGCCTTGGGGACCCGGACTCCCCGCTGCTCCATGCTGTGGGG TCAATCTTTGACCCCAACTCTGCATCTCCATTCTCAAGCCGAATCTCCTGGTGCTGCCGT TGACCTTTTTTTTCTTGCTGCAGTTTTGAAATAAAATGCCAAAGAACAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 150-355, gnl|bosTau2|chr18 (48015690-48015485) | |
| 150-355, gnl|Hg17|chr19 (54001788-54001586) | |
| 150-355, gnl|Mm7|chr7 (41751525-41751730) | |
| 466-586, gnl|bosTau2|chr18 (48011258-48011138) | |
| 466-586, gnl|canFam2|chr1 (110432174-110432053) | |
| 466-586, gnl|danRer3|chr4 (18850293-18850172) | |
| 466-586, gnl|dasNov1|scaffold_30877 (8963-8841) | |
| 466-586, gnl|echTel1|scaffold_265433 (7635-7756) | |
| 466-586, gnl|fr1|chrUn (188789264-188789145) | |
| 466-586, gnl|hg17|chr19 (53995046-53995167) | |
| 466-586, gnl|Hg17|chr19 (53995170-53995050) | |
| 466-586, gnl|loxAfr1|scaffold_112155 (4521-4641) | |
| 466-586, gnl|mm7|chr7 (41760964-41760843) | |
| 466-586, gnl|Mm7|chr7 (41760838-41760958) | |
| 466-586, gnl|oryCun1|scaffold_165303 (996-1117) | |
| 466-586, gnl|panTro1|chr20 (51381121-51381242) | |
| 466-586, gnl|rheMac2|chr19 (55096226-55096347) | |
| 466-586, gnl|rn3|chr1 (96129240-96129119) | |
| 466-586, gnl|tetNig1|chrUn_random (55262635-55262512) | |
| 466-586, gnl|xenTro1|scaffold_1952 (12638-12539) | |
| 750-893, gnl|bosTau2|chr18 (48008449-48008306) | |
| 750-893, gnl|canFam2|chr1 (110433345-110433242) | |
| 750-893, gnl|danRer3|chr4 (18853686-18853586) | |
| 750-893, gnl|dasNov1|scaffold_95446 (4462-4565) | |
| 750-893, gnl|echTel1|scaffold_265433 (5468-5571) | |
| 750-893, gnl|fr1|chrUn (188790145-188790042) | |
| 750-893, gnl|hg17|chr19 (53992254-53992357) | |
| 750-893, gnl|Hg17|chr19 (53992403-53992260) | |
| 750-893, gnl|loxAfr1|scaffold_112155 (2523-2626) | |
| 750-893, gnl|mm7|chr7 (41763527-41763424) | |
| 750-893, gnl|Mm7|chr7 (41763376-41763519) | |
| 750-893, gnl|oryCun1|scaffold_165303 (41-146) | |
| 750-893, gnl|panTro1|chr20 (51412818-51412921) | |
| 750-893, gnl|rheMac2|chr19 (55093251-55093354) | |
| 750-893, gnl|rn3|chr1 (96131960-96131857) | |
| 750-893, gnl|tetNig1|chrUn_random (55263082-55262979) | |
| 750-893, gnl|xenTro1|scaffold_70 (252181-252284) | |
| 1194-1609, gnl|bosTau2|chr18 (48006876-48006460) | |
| 1194-1609, gnl|canFam2|chr1 (110435348-110434920) | |
| 1194-1609, gnl|echTel1|scaffold_265433 (3014-3420) | |
| 1194-1609, gnl|hg17|chr19 (53990136-53990534) | |
| 1194-1609, gnl|Hg17|chr19 (53990535-53990134) | |
| 1194-1609, gnl|loxAfr1|scaffold_112155 (403-803) | |
| 1194-1609, gnl|mm7|chr7 (41765436-41765035) | |
| 1194-1609, gnl|Mm7|chr7 (41765032-41765436) | |
| 1194-1609, gnl|oryCun1|scaffold_4994 (9364-8976) | |
| 1194-1609, gnl|panTro1|chr20 (51410745-51411144) | |
| 1194-1609, gnl|rheMac2|chr19 (55091212-55091616) | |
| 1194-1609, gnl|rn3|chr1 (96133731-96133341) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 150-355, gnl|bosTau2|chr18 (48015690-48015485) | |
| 150-355, gnl|Hg17|chr19 (54001788-54001586) | |
| 150-355, gnl|Mm7|chr7 (41751525-41751730) | |
| 466-586, gnl|bosTau2|chr18 (48011258-48011138) | |
| 466-586, gnl|canFam2|chr1 (110432174-110432053) | |
| 466-586, gnl|danRer3|chr4 (18850293-18850172) | |
| 466-586, gnl|dasNov1|scaffold_30877 (8963-8841) | |
| 466-586, gnl|echTel1|scaffold_265433 (7635-7756) | |
| 466-586, gnl|fr1|chrUn (188789264-188789145) | |
| 466-586, gnl|hg17|chr19 (53995046-53995167) | |
| 466-586, gnl|Hg17|chr19 (53995170-53995050) | |
| 466-586, gnl|loxAfr1|scaffold_112155 (4521-4641) | |
| 466-586, gnl|mm7|chr7 (41760964-41760843) | |
| 466-586, gnl|Mm7|chr7 (41760838-41760958) | |
| 466-586, gnl|oryCun1|scaffold_165303 (996-1117) | |
| 466-586, gnl|panTro1|chr20 (51381121-51381242) | |
| 466-586, gnl|rheMac2|chr19 (55096226-55096347) | |
| 466-586, gnl|rn3|chr1 (96129240-96129119) | |
| 466-586, gnl|tetNig1|chrUn_random (55262635-55262512) | |
| 466-586, gnl|xenTro1|scaffold_1952 (12638-12539) | |
| 750-893, gnl|bosTau2|chr18 (48008449-48008306) | |
| 750-893, gnl|canFam2|chr1 (110433345-110433242) | |
| 750-893, gnl|danRer3|chr4 (18853686-18853586) | |
| 750-893, gnl|dasNov1|scaffold_95446 (4462-4565) | |
| 750-893, gnl|echTel1|scaffold_265433 (5468-5571) | |
| 750-893, gnl|fr1|chrUn (188790145-188790042) | |
| 750-893, gnl|hg17|chr19 (53992254-53992357) | |
| 750-893, gnl|Hg17|chr19 (53992403-53992260) | |
| 750-893, gnl|loxAfr1|scaffold_112155 (2523-2626) | |
| 750-893, gnl|mm7|chr7 (41763527-41763424) | |
| 750-893, gnl|Mm7|chr7 (41763376-41763519) | |
| 750-893, gnl|oryCun1|scaffold_165303 (41-146) | |
| 750-893, gnl|panTro1|chr20 (51412818-51412921) | |
| 750-893, gnl|rheMac2|chr19 (55093251-55093354) | |
| 750-893, gnl|rn3|chr1 (96131960-96131857) | |
| 750-893, gnl|tetNig1|chrUn_random (55263082-55262979) | |
| 750-893, gnl|xenTro1|scaffold_70 (252181-252284) | |
| 1194-1609, gnl|bosTau2|chr18 (48006876-48006460) | |
| 1194-1609, gnl|canFam2|chr1 (110435348-110434920) | |
| 1194-1609, gnl|echTel1|scaffold_265433 (3014-3420) | |
| 1194-1609, gnl|hg17|chr19 (53990136-53990534) | |
| 1194-1609, gnl|Hg17|chr19 (53990535-53990134) | |
| 1194-1609, gnl|loxAfr1|scaffold_112155 (403-803) | |
| 1194-1609, gnl|mm7|chr7 (41765436-41765035) | |
| 1194-1609, gnl|Mm7|chr7 (41765032-41765436) | |
| 1194-1609, gnl|oryCun1|scaffold_4994 (9364-8976) | |
| 1194-1609, gnl|panTro1|chr20 (51410745-51411144) | |
| 1194-1609, gnl|rheMac2|chr19 (55091212-55091616) | |
| 1194-1609, gnl|rn3|chr1 (96133731-96133341) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cov (0.660764) | |
| mas (0.210305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| hlv (0.139256) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.660764) | |
| mas (0.210305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| hlv (0.139256) | |
| eep (0.122564) | |
| jca (0.11396) |