Non-Coding RNA Search

Ss1.1-Utr1-UTR010071D01.5

Sequence:


               
               CAGGGGGTTAGCGCGCGCAGCGTTCCCGGGGAGTTGTCGACACCGGTTCGCGGCACGTGG
CTCAGCACGTGGCTGGGTTCCTGGCTCCGGGCGCCCTGGAGCCGCCGGCTTCCGTCGCCG
AGGCGGTGTCGTCCTTGACCATCGCCGACGCGTTTATCGCGGCCGGCGAGAGCCCCACCC
CGCCGCCTGCCGCTCTCCCTCGGAGGTTCATCTGCTCCTTCCCCGACTGCAGTGCCAATT
ACAACAAGGCGTGGAAACTAGACGCGCACCTGTGCAAGCACACGGGGGAGAGACCGTTCG
TTTGCGACCATGAAGGCTGCGGCAAAGCCTTTGTCCGGGACTACCACCTGAGCCGCCACG
CCCTGACCCACACCGGGGAGAAGCCCTTCGTCTGTGCAGCTAGCGGCTGTGATCAAAAAT
TCAACACAAAATCAAACTTGAAGAAGCATTTTGAACGGAAACATGAAAACCAGCAAAAAC
AGTATGTATGCAGCTTTGAAGGTTGTAAGAAGACCTTTAAGAAACACCAGCAGCTGAAAA
CCCACCAGTGCCAGCACACCAACGAACCGTTGTTCAAGTGTGCCCACGACGGATGCGGGA
AACACTTCGCTTCCCCCAGCAGCCTGAAGCGGCACGGGAAGGTCCACGAAGGCTATATTT
GTCAAAAAGAATGTTCTTTTGTGGCAAAAACATGGACAGAGCTTCTGAAACACGTGAGAG
AAACTCATAAAGAGGCGCTCCCGTGCGGCGTCTGCGGGAGAACATTTAAACGCAAGGATC
ACCTGCGGCAGCACGCGAAGACGCACGCCCCCGAGCGGGACGTGTGCCGCTGTCCCCGGG
AGGGCTGCGGCCGGACCTACACCACCGTGTTCAACCTCCAGAGCCACATTCTCTCGTTCC
ACGAGGAGCAGCGCCCGTTCGTGTGCCCGCAGGCCGGCTGCGGCAGAGCCTTCGCCATGA
AGCAGAGTCTCAGCAGGCACGCCGTCGCGCACGACCCCGACAAGAAGAAGATGAAGCTCA
AGGTGAAGCCATCTCGAGAAAAACGGAGTCTGGCCTCTCGACTCAGCGGGTATATCCCTC
CGAAGAGGAAACAGGACCAGGGCGTGTCTTTGCCTAGAAGCAAGGAGTCGCTGGACGGCC
CCGAGTGCCACGGGCCCTCCGCCGTCAGGATGCTGAGCCCAGCTGAACACGGGACTGCCC
TGCTTGGAGGACCACAGACCAGCCAGCTCAGTTAGGTCCCCTCAGAAGCACGCTTTTATT
AAAATCACTGGTGCAGCAAAAAAAAGGCCCCATGGTTCCCGTCTTCTCTGCTCAGCGGGT
CCCCTCTCGGGGGCCCCTGTGCCGCTCTGTTTGCTTCCTCCTTTCTGCTCAAGGGGCGAA
GAACACACATCATTGCCTTTCCCCCTCTGATGAGCTGTGGCCTGGAAGAGAAGGTAGCTA
TTCCAGGCATAGTCTGGAGGATTTGGTTGCATAGCTCCTCCTAGAAAAGGAAAACAGCCA
AACACTTGTGATTCTTTCCAGTGTAAGAATGCTGATTTTCATACCCGTAAAACCCAGCAT
TTTTGAACTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGGGTTAGCGCGCGCAGCGTTCCCGGGGAGTTGTCGACACCGGTTCGCGGCACGTGG
CTCAGCACGTGGCTGGGTTCCTGGCTCCGGGCGCCCTGGAGCCGCCGGCTTCCGTCGCCG
AGGCGGTGTCGTCCTTGACCATCGCCGACGCGTTTATCGCGGCCGGCGAGAGCCCCACCC
CGCCGCCTGCCGCTCTCCCTCGGAGGTTCATCTGCTCCTTCCCCGACTGCAGTGCCAATT
ACAACAAGGCGTGGAAACTAGACGCGCACCTGTGCAAGCACACGGGGGAGAGACCGTTCG
TTTGCGACCATGAAGGCTGCGGCAAAGCCTTTGTCCGGGACTACCACCTGAGCCGCCACG
CCCTGACCCACACCGGGGAGAAGCCCTTCGTCTGTGCAGCTAGCGGCTGTGATCAAAAAT
TCAACACAAAATCAAACTTGAAGAAGCATTTTGAACGGAAACATGAAAACCAGCAAAAAC
AGTATGTATGCAGCTTTGAAGGTTGTAAGAAGACCTTTAAGAAACACCAGCAGCTGAAAA
CCCACCAGTGCCAGCACACCAACGAACCGTTGTTCAAGTGTGCCCACGACGGATGCGGGA
AACACTTCGCTTCCCCCAGCAGCCTGAAGCGGCACGGGAAGGTCCACGAAGGCTATATTT
GTCAAAAAGAATGTTCTTTTGTGGCAAAAACATGGACAGAGCTTCTGAAACACGTGAGAG
AAACTCATAAAGAGGCGCTCCCGTGCGGCGTCTGCGGGAGAACATTTAAACGCAAGGATC
ACCTGCGGCAGCACGCGAAGACGCACGCCCCCGAGCGGGACGTGTGCCGCTGTCCCCGGG
AGGGCTGCGGCCGGACCTACACCACCGTGTTCAACCTCCAGAGCCACATTCTCTCGTTCC
ACGAGGAGCAGCGCCCGTTCGTGTGCCCGCAGGCCGGCTGCGGCAGAGCCTTCGCCATGA
AGCAGAGTCTCAGCAGGCACGCCGTCGCGCACGACCCCGACAAGAAGAAGATGAAGCTCA
AGGTGAAGCCATCTCGAGAAAAACGGAGTCTGGCCTCTCGACTCAGCGGGTATATCCCTC
CGAAGAGGAAACAGGACCAGGGCGTGTCTTTGCCTAGAAGCAAGGAGTCGCTGGACGGCC
CCGAGTGCCACGGGCCCTCCGCCGTCAGGATGCTGAGCCCAGCTGAACACGGGACTGCCC
TGCTTGGAGGACCACAGACCAGCCAGCTCAGTTAGGTCCCCTCAGAAGCACGCTTTTATT
AAAATCACTGGTGCAGCAAAAAAAAGGCCCCATGGTTCCCGTCTTCTCTGCTCAGCGGGT
CCCCTCTCGGGGGCCCCTGTGCCGCTCTGTTTGCTTCCTCCTTTCTGCTCAAGGGGCGAA
GAACACACATCATTGCCTTTCCCCCTCTGATGAGCTGTGGCCTGGAAGAGAAGGTAGCTA
TTCCAGGCATAGTCTGGAGGATTTGGTTGCATAGCTCCTCCTAGAAAAGGAAAACAGCCA
AACACTTGTGATTCTTTCCAGTGTAAGAATGCTGATTTTCATACCCGTAAAACCCAGCAT
TTTTGAACTCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57104906|ref|XP_534523.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57104906|ref|XP_534523.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               36-135, - strand, RNAz p=0.677

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-135, - strand, RNAz p=0.677

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               36-290, gnl|bosTau2|chr12 (18070100-18069845)
               

               
               36-290, gnl|Hg17|chr13 (26896798-26897075)
               

               
               36-290, gnl|Mm7|chr5 (145843120-145843379)
               


               
               743-967, gnl|bosTau2|chr12 (18062885-18062661)
               

               
               743-967, gnl|Hg17|chr13 (26906952-26907176)
               

               
               743-967, gnl|Mm7|chr5 (145848262-145848486)
               


               
               1020-1572, gnl|bosTau2|chr12 (18061070-18060507)
               

               
               1020-1572, gnl|Hg17|chr13 (26907567-26908132)
               

               
               1020-1572, gnl|Mm7|chr5 (145849769-145850268)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-290, gnl|bosTau2|chr12 (18070100-18069845)
               

               
               36-290, gnl|Hg17|chr13 (26896798-26897075)
               

               
               36-290, gnl|Mm7|chr5 (145843120-145843379)
               


               
               743-967, gnl|bosTau2|chr12 (18062885-18062661)
               

               
               743-967, gnl|Hg17|chr13 (26906952-26907176)
               

               
               743-967, gnl|Mm7|chr5 (145848262-145848486)
               


               
               1020-1572, gnl|bosTau2|chr12 (18061070-18060507)
               

               
               1020-1572, gnl|Hg17|chr13 (26907567-26908132)
               

               
               1020-1572, gnl|Mm7|chr5 (145849769-145850268)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	36-290, gnl\|bosTau2\|chr12 (18070100-18069845)
	36-290, gnl\|Hg17\|chr13 (26896798-26897075)
	36-290, gnl\|Mm7\|chr5 (145843120-145843379)

	743-967, gnl\|bosTau2\|chr12 (18062885-18062661)
	743-967, gnl\|Hg17\|chr13 (26906952-26907176)
	743-967, gnl\|Mm7\|chr5 (145848262-145848486)

	1020-1572, gnl\|bosTau2\|chr12 (18061070-18060507)
	1020-1572, gnl\|Hg17\|chr13 (26907567-26908132)
	1020-1572, gnl\|Mm7\|chr5 (145849769-145850268)

	elu (0.385356)
	nlu (0.191681)
	eye (0.170503)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)