Ss1.1-Utr1-UTR010072A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGGAAACGGCGGCGACGGCAGAGGCGACAGAACCAAGGGGCTGTGGTTGGTGGGCGCT CCAGGGAGCCGAGCCAGAGGAGCGTGACCCGGAAGTGGAAGCGAACCCCCGTCCCAGCTC CGCGAGACTTGCCCCAGGCCCACCGGTGGGCTCCTGCGGCCATGGACCTGTTGTTTGGGC GCCGGAAGACGCCAGAGGAGCTGCTGCGCCAGAACCAGCGCGCCCTGAATCGTGCGATGC GAGAGCTGGACCGTGAGCGACAGAAGCTAGAGACCCAGGAGAAGAAGATCATTGCAGACA TCAAGAAGATGGCCAAGCAGGGCCAGATGGATGCGGTGCGCATCATGGCAAAAGACCTGG TGCGCACCCGGCGGTACGTGCGCAAGTTCGTGTTGATGCGGGCCAACATCCAGGCCGTGT CCCTCAAGATCCAGACGCTCAAGTCTAACAACTCCATGGCACAAGCCATGAAGGGCGTCA CCAAGGCCATGGGCACCATGAACAGACAGCTCAAGCTGCCCCAGATCCAGAAGATCATGA TGGAGTTTGAGCGGCAGGCGGAGATCATGGACATGAAGGAGGAGATGATGAACGACGCCA TCGACGACGCCATGGGGGACGAGGAGGACGAGGAGGAGAGCGATGCCGTCGTGGCTCAGG TCCTGGATGAGCTGGGGTTGAGCCTGACAGATGAGCTGTCAAACCTCCCCTCCACCGGAG GTTCCCTCAGTGTGGCTGCCAGTGGGAAGAAGGCCGAGGCCGCAGCCTCGGCCCTAGTTG ATGCAGACGCAGATCTGGAGGAGCGGCTCAAGAACCTTCGAAGGGACTGATTGCTCCCTG TGCCACCCCAGGGAACCAGCAGATGGCCCAGCATTTTCACTGTACCTTCTGTAATAAAAG AGATTGAGCTCTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGGAAACGGCGGCGACGGCAGAGGCGACAGAACCAAGGGGCTGTGGTTGGTGGGCGCT CCAGGGAGCCGAGCCAGAGGAGCGTGACCCGGAAGTGGAAGCGAACCCCCGTCCCAGCTC CGCGAGACTTGCCCCAGGCCCACCGGTGGGCTCCTGCGGCCATGGACCTGTTGTTTGGGC GCCGGAAGACGCCAGAGGAGCTGCTGCGCCAGAACCAGCGCGCCCTGAATCGTGCGATGC GAGAGCTGGACCGTGAGCGACAGAAGCTAGAGACCCAGGAGAAGAAGATCATTGCAGACA TCAAGAAGATGGCCAAGCAGGGCCAGATGGATGCGGTGCGCATCATGGCAAAAGACCTGG TGCGCACCCGGCGGTACGTGCGCAAGTTCGTGTTGATGCGGGCCAACATCCAGGCCGTGT CCCTCAAGATCCAGACGCTCAAGTCTAACAACTCCATGGCACAAGCCATGAAGGGCGTCA CCAAGGCCATGGGCACCATGAACAGACAGCTCAAGCTGCCCCAGATCCAGAAGATCATGA TGGAGTTTGAGCGGCAGGCGGAGATCATGGACATGAAGGAGGAGATGATGAACGACGCCA TCGACGACGCCATGGGGGACGAGGAGGACGAGGAGGAGAGCGATGCCGTCGTGGCTCAGG TCCTGGATGAGCTGGGGTTGAGCCTGACAGATGAGCTGTCAAACCTCCCCTCCACCGGAG GTTCCCTCAGTGTGGCTGCCAGTGGGAAGAAGGCCGAGGCCGCAGCCTCGGCCCTAGTTG ATGCAGACGCAGATCTGGAGGAGCGGCTCAAGAACCTTCGAAGGGACTGATTGCTCCCTG TGCCACCCCAGGGAACCAGCAGATGGCCCAGCATTTTCACTGTACCTTCTGTAATAAAAG AGATTGAGCTCTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 128-330, gnl|bosTau2|chr18 (56381930-56381728) | |
| 128-330, gnl|Hg17|chr19 (63757429-63757223) | |
| 128-330, gnl|Mm7|chr7 (11620611-11620409) | |
| 507-640, gnl|bosTau2|chr18 (56380668-56380535) | |
| 507-640, gnl|canFam2|chr1 (102476332-102476166) | |
| 507-640, gnl|danRer3|chr12 (26435045-26435201) | |
| 507-640, gnl|dasNov1|scaffold_97679 (3273-3106) | |
| 507-640, gnl|echTel1|scaffold_211771 (2890-3065) | |
| 507-640, gnl|fr1|chrUn (215580329-215580180) | |
| 507-640, gnl|galGal2|chrUn (25169427-25169574) | |
| 507-640, gnl|hg17|chr19 (63755220-63755381) | |
| 507-640, gnl|Hg17|chr19 (63755367-63755234) | |
| 507-640, gnl|mm7|chr7 (11619004-11619165) | |
| 507-640, gnl|Mm7|chr7 (11619149-11619016) | |
| 507-640, gnl|oryCun1|scaffold_105624 (5115-4952) | |
| 507-640, gnl|panTro1|chr20 (61512100-61512261) | |
| 507-640, gnl|rheMac2|chr19 (64322837-64322998) | |
| 507-640, gnl|rn3|chr1 (72969438-72969278) | |
| 507-640, gnl|tetNig1|chr2 (1459575-1459724) | |
| 507-640, gnl|xenTro1|scaffold_50 (882478-882625) | |
| 700-913, gnl|bosTau2|chr18 (56380283-56380073) | |
| 700-913, gnl|Hg17|chr19 (63754958-63754745) | |
| 700-913, gnl|Mm7|chr7 (11618786-11618596) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-330, gnl|bosTau2|chr18 (56381930-56381728) | |
| 128-330, gnl|Hg17|chr19 (63757429-63757223) | |
| 128-330, gnl|Mm7|chr7 (11620611-11620409) | |
| 507-640, gnl|bosTau2|chr18 (56380668-56380535) | |
| 507-640, gnl|canFam2|chr1 (102476332-102476166) | |
| 507-640, gnl|danRer3|chr12 (26435045-26435201) | |
| 507-640, gnl|dasNov1|scaffold_97679 (3273-3106) | |
| 507-640, gnl|echTel1|scaffold_211771 (2890-3065) | |
| 507-640, gnl|fr1|chrUn (215580329-215580180) | |
| 507-640, gnl|galGal2|chrUn (25169427-25169574) | |
| 507-640, gnl|hg17|chr19 (63755220-63755381) | |
| 507-640, gnl|Hg17|chr19 (63755367-63755234) | |
| 507-640, gnl|mm7|chr7 (11619004-11619165) | |
| 507-640, gnl|Mm7|chr7 (11619149-11619016) | |
| 507-640, gnl|oryCun1|scaffold_105624 (5115-4952) | |
| 507-640, gnl|panTro1|chr20 (61512100-61512261) | |
| 507-640, gnl|rheMac2|chr19 (64322837-64322998) | |
| 507-640, gnl|rn3|chr1 (72969438-72969278) | |
| 507-640, gnl|tetNig1|chr2 (1459575-1459724) | |
| 507-640, gnl|xenTro1|scaffold_50 (882478-882625) | |
| 700-913, gnl|bosTau2|chr18 (56380283-56380073) | |
| 700-913, gnl|Hg17|chr19 (63754958-63754745) | |
| 700-913, gnl|Mm7|chr7 (11618786-11618596) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| elu (0.770713) | |
| ill (0.702371) | |
| duo (0.691204) | |
| cag (0.453583) | |
| cly (0.361925) | |
| clu (0.358938) | |
| nje (0.33184) | |
| cje (0.330469) | |
| csp (0.322373) | |
| lnt (0.284616) | |
| jca (0.22792) | |
| nms (0.213858) | |
| fli (0.202881) | |
| eje (0.197668) | |
| col (0.195008) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cli (0.152812) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| ill (0.702371) | |
| duo (0.691204) | |
| cag (0.453583) | |
| cly (0.361925) | |
| clu (0.358938) | |
| nje (0.33184) | |
| cje (0.330469) | |
| csp (0.322373) | |
| lnt (0.284616) | |
| jca (0.22792) | |
| nms (0.213858) | |
| fli (0.202881) | |
| eje (0.197668) | |
| col (0.195008) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cli (0.152812) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |