Ss1.1-Utr1-UTR010072A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAATCACTGGCTGGCCCTGGTGTCGGGAAAATGATCCACAGTCTATTTCTCATAAACTG TTCCGGTGACATATTTCTGGAGAAGCACTGGAAGAGCGTTGTGAGCCAGTCTGTCTGTGA TTATTTCTTTGAAGCTCAAGAGAAAGCTGCTGATGTTGAAAATGTACCTCCTGTTATTTC AACACCTCACCACTACCTCATCAGTATATACCGGGATAAGCTCTTCTTTGTCTCTGTCAT ACAGACTGAAGTGCCACCTCTCTTTGTAATTGAGTTCCTACATCGAGTTGCTGACACTTT TCAGGTTGGTTATTCATCAAATCTTTTGAATTTAAATTATCCAAGTTTGATGAAGGTGGA ACACGGTTATATTCTTTAATTACCCAGCTTTTGATGTGTAATCTCTCTGTCTCTCCCTGT TCTTTTCACCTAAGCTTAAGCTCATAAACATAAACCTGTTGTCAACTCTATTACAGGCAG TAGTAATGTTGGGGACACACTCCCCACTGGGCAGCTGTCCAACATACCATGGCGCCGGGC AGGGGTAAAGTACACAAACAATGAAGCCTATTTTGATGTCGTTGAAGAAATAGATGCAAT TCTCTGAATGGTAGGATCTACAGTCTTTGCAGAAATTCAAGGGGTCATTGATGCTTGCAT TAAGCTATCTGGAATGCCTGACCTCTCCCTTTCTTTCATGAACCCAAGGCTTCTAGATGA CGTCAGCTTCCACCCCTGTATCAGGTTCAAGCGTTGGGAATCTGAAAGAGTATTGTCATT TATTCCTCCGGATGGAAACTTCCGACTCATATCATACCGTGTCAGCTCACAAAATCTAGT GGCAATACCAGTATATGTGAAACATAGCATCAGTTTTAAGGAGAACAGTTCTTGTGGCAG ATTTGATATTACAATTGGACCAAAGCAGAATATGGGGAAAACTATTGAAGGAATCACAGT GACAGTTCACATGCCAAAAGTCGTGTTGAATATGAACCTGACACCAACACAAGGCAGCTA CACATTTGATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAATCACTGGCTGGCCCTGGTGTCGGGAAAATGATCCACAGTCTATTTCTCATAAACTG TTCCGGTGACATATTTCTGGAGAAGCACTGGAAGAGCGTTGTGAGCCAGTCTGTCTGTGA TTATTTCTTTGAAGCTCAAGAGAAAGCTGCTGATGTTGAAAATGTACCTCCTGTTATTTC AACACCTCACCACTACCTCATCAGTATATACCGGGATAAGCTCTTCTTTGTCTCTGTCAT ACAGACTGAAGTGCCACCTCTCTTTGTAATTGAGTTCCTACATCGAGTTGCTGACACTTT TCAGGTTGGTTATTCATCAAATCTTTTGAATTTAAATTATCCAAGTTTGATGAAGGTGGA ACACGGTTATATTCTTTAATTACCCAGCTTTTGATGTGTAATCTCTCTGTCTCTCCCTGT TCTTTTCACCTAAGCTTAAGCTCATAAACATAAACCTGTTGTCAACTCTATTACAGGCAG TAGTAATGTTGGGGACACACTCCCCACTGGGCAGCTGTCCAACATACCATGGCGCCGGGC AGGGGTAAAGTACACAAACAATGAAGCCTATTTTGATGTCGTTGAAGAAATAGATGCAAT TCTCTGAATGGTAGGATCTACAGTCTTTGCAGAAATTCAAGGGGTCATTGATGCTTGCAT TAAGCTATCTGGAATGCCTGACCTCTCCCTTTCTTTCATGAACCCAAGGCTTCTAGATGA CGTCAGCTTCCACCCCTGTATCAGGTTCAAGCGTTGGGAATCTGAAAGAGTATTGTCATT TATTCCTCCGGATGGAAACTTCCGACTCATATCATACCGTGTCAGCTCACAAAATCTAGT GGCAATACCAGTATATGTGAAACATAGCATCAGTTTTAAGGAGAACAGTTCTTGTGGCAG ATTTGATATTACAATTGGACCAAAGCAGAATATGGGGAAAACTATTGAAGGAATCACAGT GACAGTTCACATGCCAAAAGTCGTGTTGAATATGAACCTGACACCAACACAAGGCAGCTA CACATTTGATCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 151-347, - strand, RNAz p=0.993057 | |
| 163-306, - strand, RNAz p=0.787397 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 151-347, - strand, RNAz p=0.993057 | |
| 163-306, - strand, RNAz p=0.787397 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 28-460, gnl|bosTau2|chr28 (23237378-23236946) | |
| 28-460, gnl|Hg17|chr10 (75568147-75567731) | |
| 28-460, gnl|Mm7|chr14 (18704437-18703995) | |
| 32-306, gnl|bosTau2|chr27 (23508315-23508589) | |
| 32-306, gnl|canFam2|chr16 (26471300-26471061) | |
| 32-306, gnl|danRer3|chr13 (26157442-26157203) | |
| 32-306, gnl|dasNov1|scaffold_70701 (6292-6048) | |
| 32-306, gnl|echTel1|scaffold_53902 (3387-3164) | |
| 32-306, gnl|fr1|chrUn (292850563-292850802) | |
| 32-306, gnl|galGal2|chrUn (877685-877924) | |
| 32-306, gnl|hg17|chr8 (42131348-42131587) | |
| 32-306, gnl|Hg17|chr8 (42131363-42131637) | |
| 32-306, gnl|loxAfr1|scaffold_145920 (3086-3325) | |
| 32-306, gnl|mm7|chr8 (21589365-21589127) | |
| 32-306, gnl|Mm7|chr8 (21589349-21589075) | |
| 32-306, gnl|monDom2|scaffold_1 (79918186-79917954) | |
| 32-306, gnl|oryCun1|scaffold_184425 (82523-82762) | |
| 32-306, gnl|panTro1|chr7 (43549819-43550058) | |
| 32-306, gnl|rheMac2|chr8 (42733191-42733430) | |
| 32-306, gnl|rn3|chr16 (73688661-73688902) | |
| 32-306, gnl|tetNig1|chr12 (11295403-11295631) | |
| 32-306, gnl|xenTro1|scaffold_106 (448522-448294) | |
| 474-600, gnl|bosTau2|chr27 (23514484-23514610) | |
| 474-600, gnl|canFam2|chr16 (26463892-26463814) | |
| 474-600, gnl|canFam2|chr16 (26463750-26463888) | |
| 474-600, gnl|danRer3|chr13 (26154941-26154863) | |
| 474-600, gnl|danRer3|chrUn (157627576-157627714) | |
| 474-600, gnl|dasNov1|scaffold_11233 (25306-25228) | |
| 474-600, gnl|dasNov1|scaffold_11233 (25164-25302) | |
| 474-600, gnl|echTel1|scaffold_53902 (2778-2699) | |
| 474-600, gnl|echTel1|scaffold_53902 (2635-2774) | |
| 474-600, gnl|fr1|chrUn (292851228-292851306) | |
| 474-600, gnl|fr1|chrUn (292851370-292851232) | |
| 474-600, gnl|galGal2|chrUn (880012-880090) | |
| 474-600, gnl|galGal2|chrUn (880154-880016) | |
| 474-600, gnl|hg17|chr8 (42138954-42139032) | |
| 474-600, gnl|Hg17|chr8 (42138953-42139079) | |
| 474-600, gnl|hg17|chr9 (68633548-68633686) | |
| 474-600, gnl|loxAfr1|scaffold_10094 (13591-13470) | |
| 474-600, gnl|loxAfr1|scaffold_13553 (39931-39853) | |
| 474-600, gnl|mm7|chr8 (21582540-21582462) | |
| 474-600, gnl|mm7|chr8 (21582398-21582536) | |
| 474-600, gnl|Mm7|chr8 (21582539-21582413) | |
| 474-600, gnl|monDom2|scaffold_1 (79895707-79895629) | |
| 474-600, gnl|monDom2|scaffold_1 (79895565-79895703) | |
| 474-600, gnl|oryCun1|scaffold_184425 (90198-90276) | |
| 474-600, gnl|oryCun1|scaffold_184425 (90340-90202) | |
| 474-600, gnl|panTro1|chr11 (52408102-52408240) | |
| 474-600, gnl|panTro1|chr7 (43557422-43557500) | |
| 474-600, gnl|rheMac2|chr15 (77584268-77584406) | |
| 474-600, gnl|rheMac2|chr8 (42740871-42740949) | |
| 474-600, gnl|rn3|chr16 (73697353-73697431) | |
| 474-600, gnl|rn3|chr16 (73697495-73697357) | |
| 474-600, gnl|tetNig1|chr12 (11296046-11296124) | |
| 474-600, gnl|tetNig1|chr12 (11296188-11296050) | |
| 474-600, gnl|xenTro1|scaffold_106 (446288-446210) | |
| 474-600, gnl|xenTro1|scaffold_106 (446146-446284) | |
| 700-834, gnl|bosTau2|chr27 (23519319-23519453) | |
| 700-834, gnl|canFam2|chr16 (26459679-26459538) | |
| 700-834, gnl|danRer3|chr13 (26153115-26152975) | |
| 700-834, gnl|dasNov1|scaffold_11233 (21408-21267) | |
| 700-834, gnl|echTel1|scaffold_191710 (6533-6392) | |
| 700-834, gnl|fr1|chrUn (292851655-292851795) | |
| 700-834, gnl|galGal2|chrUn (881657-881798) | |
| 700-834, gnl|hg17|chr8 (42142100-42142241) | |
| 700-834, gnl|Hg17|chr8 (42142101-42142235) | |
| 700-834, gnl|loxAfr1|scaffold_13553 (36547-36406) | |
| 700-834, gnl|mm7|chr8 (21578172-21578031) | |
| 700-834, gnl|Mm7|chr8 (21578169-21578035) | |
| 700-834, gnl|monDom2|scaffold_1 (79894662-79894521) | |
| 700-834, gnl|oryCun1|scaffold_184425 (90780-90921) | |
| 700-834, gnl|panTro1|chr7 (43560587-43560728) | |
| 700-834, gnl|rheMac2|chr8 (42743773-42743914) | |
| 700-834, gnl|rn3|chr16 (73701294-73701435) | |
| 700-834, gnl|tetNig1|chr12 (11296406-11296546) | |
| 700-834, gnl|xenTro1|scaffold_106 (444468-444327) | |
| 835-1032, gnl|bosTau2|chr28 (23228855-23228658) | |
| 835-1032, gnl|Hg17|chr10 (75556119-75555922) | |
| 835-1032, gnl|Mm7|chr14 (18696858-18696661) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-460, gnl|bosTau2|chr28 (23237378-23236946) | |
| 28-460, gnl|Hg17|chr10 (75568147-75567731) | |
| 28-460, gnl|Mm7|chr14 (18704437-18703995) | |
| 32-306, gnl|bosTau2|chr27 (23508315-23508589) | |
| 32-306, gnl|canFam2|chr16 (26471300-26471061) | |
| 32-306, gnl|danRer3|chr13 (26157442-26157203) | |
| 32-306, gnl|dasNov1|scaffold_70701 (6292-6048) | |
| 32-306, gnl|echTel1|scaffold_53902 (3387-3164) | |
| 32-306, gnl|fr1|chrUn (292850563-292850802) | |
| 32-306, gnl|galGal2|chrUn (877685-877924) | |
| 32-306, gnl|hg17|chr8 (42131348-42131587) | |
| 32-306, gnl|Hg17|chr8 (42131363-42131637) | |
| 32-306, gnl|loxAfr1|scaffold_145920 (3086-3325) | |
| 32-306, gnl|mm7|chr8 (21589365-21589127) | |
| 32-306, gnl|Mm7|chr8 (21589349-21589075) | |
| 32-306, gnl|monDom2|scaffold_1 (79918186-79917954) | |
| 32-306, gnl|oryCun1|scaffold_184425 (82523-82762) | |
| 32-306, gnl|panTro1|chr7 (43549819-43550058) | |
| 32-306, gnl|rheMac2|chr8 (42733191-42733430) | |
| 32-306, gnl|rn3|chr16 (73688661-73688902) | |
| 32-306, gnl|tetNig1|chr12 (11295403-11295631) | |
| 32-306, gnl|xenTro1|scaffold_106 (448522-448294) | |
| 474-600, gnl|bosTau2|chr27 (23514484-23514610) | |
| 474-600, gnl|canFam2|chr16 (26463892-26463814) | |
| 474-600, gnl|canFam2|chr16 (26463750-26463888) | |
| 474-600, gnl|danRer3|chr13 (26154941-26154863) | |
| 474-600, gnl|danRer3|chrUn (157627576-157627714) | |
| 474-600, gnl|dasNov1|scaffold_11233 (25306-25228) | |
| 474-600, gnl|dasNov1|scaffold_11233 (25164-25302) | |
| 474-600, gnl|echTel1|scaffold_53902 (2778-2699) | |
| 474-600, gnl|echTel1|scaffold_53902 (2635-2774) | |
| 474-600, gnl|fr1|chrUn (292851228-292851306) | |
| 474-600, gnl|fr1|chrUn (292851370-292851232) | |
| 474-600, gnl|galGal2|chrUn (880012-880090) | |
| 474-600, gnl|galGal2|chrUn (880154-880016) | |
| 474-600, gnl|hg17|chr8 (42138954-42139032) | |
| 474-600, gnl|Hg17|chr8 (42138953-42139079) | |
| 474-600, gnl|hg17|chr9 (68633548-68633686) | |
| 474-600, gnl|loxAfr1|scaffold_10094 (13591-13470) | |
| 474-600, gnl|loxAfr1|scaffold_13553 (39931-39853) | |
| 474-600, gnl|mm7|chr8 (21582540-21582462) | |
| 474-600, gnl|mm7|chr8 (21582398-21582536) | |
| 474-600, gnl|Mm7|chr8 (21582539-21582413) | |
| 474-600, gnl|monDom2|scaffold_1 (79895707-79895629) | |
| 474-600, gnl|monDom2|scaffold_1 (79895565-79895703) | |
| 474-600, gnl|oryCun1|scaffold_184425 (90198-90276) | |
| 474-600, gnl|oryCun1|scaffold_184425 (90340-90202) | |
| 474-600, gnl|panTro1|chr11 (52408102-52408240) | |
| 474-600, gnl|panTro1|chr7 (43557422-43557500) | |
| 474-600, gnl|rheMac2|chr15 (77584268-77584406) | |
| 474-600, gnl|rheMac2|chr8 (42740871-42740949) | |
| 474-600, gnl|rn3|chr16 (73697353-73697431) | |
| 474-600, gnl|rn3|chr16 (73697495-73697357) | |
| 474-600, gnl|tetNig1|chr12 (11296046-11296124) | |
| 474-600, gnl|tetNig1|chr12 (11296188-11296050) | |
| 474-600, gnl|xenTro1|scaffold_106 (446288-446210) | |
| 474-600, gnl|xenTro1|scaffold_106 (446146-446284) | |
| 700-834, gnl|bosTau2|chr27 (23519319-23519453) | |
| 700-834, gnl|canFam2|chr16 (26459679-26459538) | |
| 700-834, gnl|danRer3|chr13 (26153115-26152975) | |
| 700-834, gnl|dasNov1|scaffold_11233 (21408-21267) | |
| 700-834, gnl|echTel1|scaffold_191710 (6533-6392) | |
| 700-834, gnl|fr1|chrUn (292851655-292851795) | |
| 700-834, gnl|galGal2|chrUn (881657-881798) | |
| 700-834, gnl|hg17|chr8 (42142100-42142241) | |
| 700-834, gnl|Hg17|chr8 (42142101-42142235) | |
| 700-834, gnl|loxAfr1|scaffold_13553 (36547-36406) | |
| 700-834, gnl|mm7|chr8 (21578172-21578031) | |
| 700-834, gnl|Mm7|chr8 (21578169-21578035) | |
| 700-834, gnl|monDom2|scaffold_1 (79894662-79894521) | |
| 700-834, gnl|oryCun1|scaffold_184425 (90780-90921) | |
| 700-834, gnl|panTro1|chr7 (43560587-43560728) | |
| 700-834, gnl|rheMac2|chr8 (42743773-42743914) | |
| 700-834, gnl|rn3|chr16 (73701294-73701435) | |
| 700-834, gnl|tetNig1|chr12 (11296406-11296546) | |
| 700-834, gnl|xenTro1|scaffold_106 (444468-444327) | |
| 835-1032, gnl|bosTau2|chr28 (23228855-23228658) | |
| 835-1032, gnl|Hg17|chr10 (75556119-75555922) | |
| 835-1032, gnl|Mm7|chr14 (18696858-18696661) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ssp (0.13552) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ssp (0.13552) |