Non-Coding RNA Search

Ss1.1-Utr1-UTR010072C01.5

Sequence:


               
               CTGCGGGTTGAAATCCGCATACCGGTGAAGATGCTGCTTGACCTGTCCGAGGAACATAAG
GAGCATCTTGCCTTCCTGCCGCAAGTGGACAGCGCAGTGGTCGCCGAGTTTGGGCGAATT
GCGGTGGAGTTCCTGAGGCGAGGCTCGAACCCCAAGATCTACGAAGGCGCTGCGAGAAAA
CTTGGTGTGAGTAGTGACACTGTACAGCATGGTGTGGAAGGATTAATATACCTCCTCACT
GAAAGCTCAAAGCTCATGATTTCTGAACTGGATTTCCAAGACTCTGTTTTTGTTCTGGGA
TTCTCTGAAGACTTAAACAAATTGTTGCTTCAGCTTTATCTGGACAACAGAAAAGAGATC
AGAACTATCCTGAGTGAATTGGCACCAGACCTTCCCAGTTACCACAGCCTTGAATGGAGA
CTAGACGTACAGCTTGCAAGCAGAAGCCTCAGGCAACAGATTAAACCAACAGTGACTATA
AAGCTGCACCTTAATCAGAATGGAGAACACAACACCCAAGTTCTTCAGACAGACCCAGCC
ACTTTGCTCCATTTGGTTCAGCAATTGGAACAAGCATTGGAGGAAATGAAAACAAACCAC
TGTAGGAGAGTTGTGCGCAACATCAAGTAGTCCCAGTTTTATAGTTTTCTTCCCTTTAAA
TCACTTGTGAATTGATGACATGCAGCAATTACTTTTCAAAGTTAATTTTTTAAATTGATA
GTGATAAACACAAAAATTTCATAAAATTTCTTTTCCTATCAAGATACTAAAGTCATGATC
GAAGGCTAAGTAAAGTTTCTTTCCTGGTGCTAAATGTGGTCTGCTTCTTAACAATCCATA
TGTATTTTGTATTTTTAATGTGTAAATAAGATTGAATCAACCAGAAGTGAATCTATACTG
TTCACATCCTCTGTGTATATAAGTGACTATCCTTTTTTGATACTTATTTTGACTGCTTAT
TTTCTTCCTTATTGACCAAAATTTAAAAATAAAATTCACAATGTAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCGGGTTGAAATCCGCATACCGGTGAAGATGCTGCTTGACCTGTCCGAGGAACATAAG
GAGCATCTTGCCTTCCTGCCGCAAGTGGACAGCGCAGTGGTCGCCGAGTTTGGGCGAATT
GCGGTGGAGTTCCTGAGGCGAGGCTCGAACCCCAAGATCTACGAAGGCGCTGCGAGAAAA
CTTGGTGTGAGTAGTGACACTGTACAGCATGGTGTGGAAGGATTAATATACCTCCTCACT
GAAAGCTCAAAGCTCATGATTTCTGAACTGGATTTCCAAGACTCTGTTTTTGTTCTGGGA
TTCTCTGAAGACTTAAACAAATTGTTGCTTCAGCTTTATCTGGACAACAGAAAAGAGATC
AGAACTATCCTGAGTGAATTGGCACCAGACCTTCCCAGTTACCACAGCCTTGAATGGAGA
CTAGACGTACAGCTTGCAAGCAGAAGCCTCAGGCAACAGATTAAACCAACAGTGACTATA
AAGCTGCACCTTAATCAGAATGGAGAACACAACACCCAAGTTCTTCAGACAGACCCAGCC
ACTTTGCTCCATTTGGTTCAGCAATTGGAACAAGCATTGGAGGAAATGAAAACAAACCAC
TGTAGGAGAGTTGTGCGCAACATCAAGTAGTCCCAGTTTTATAGTTTTCTTCCCTTTAAA
TCACTTGTGAATTGATGACATGCAGCAATTACTTTTCAAAGTTAATTTTTTAAATTGATA
GTGATAAACACAAAAATTTCATAAAATTTCTTTTCCTATCAAGATACTAAAGTCATGATC
GAAGGCTAAGTAAAGTTTCTTTCCTGGTGCTAAATGTGGTCTGCTTCTTAACAATCCATA
TGTATTTTGTATTTTTAATGTGTAAATAAGATTGAATCAACCAGAAGTGAATCTATACTG
TTCACATCCTCTGTGTATATAAGTGACTATCCTTTTTTGATACTTATTTTGACTGCTTAT
TTTCTTCCTTATTGACCAAAATTTAAAAATAAAATTCACAATGTAATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q66VF5_GECJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q66VF5_GECJA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               431-987, gnl|bosTau2|chr21 (44335032-44335589)
               

               
               431-987, gnl|Hg17|chr3 (150942205-150941250)
               

               
               431-987, gnl|Mm7|chr3 (57773933-57773438)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               431-987, gnl|bosTau2|chr21 (44335032-44335589)
               

               
               431-987, gnl|Hg17|chr3 (150942205-150941250)
               

               
               431-987, gnl|Mm7|chr3 (57773933-57773438)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               lyg (0.798616)
               

               
               mgp (0.692042)
               

               
               aor (0.390549)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               cst (0.280073)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.798616)
               

               
               mgp (0.692042)
               

               
               aor (0.390549)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               cst (0.280073)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	431-987, gnl\|bosTau2\|chr21 (44335032-44335589)
	431-987, gnl\|Hg17\|chr3 (150942205-150941250)
	431-987, gnl\|Mm7\|chr3 (57773933-57773438)

	lyg (0.798616)
	mgp (0.692042)
	aor (0.390549)
	nlu (0.383362)
	thg (0.380373)
	mgm (0.360685)
	fty (0.351679)
	sin (0.349895)
	rec (0.346141)
	vin (0.332557)
	mga (0.32041)
	isp (0.300752)
	bfe (0.299715)
	liv (0.292569)
	cst (0.280073)
	ret (0.257467)
	sug (0.254582)
	tra (0.246184)
	cbe (0.239234)
	ece (0.229305)
	sag (0.182715)
	gul (0.177588)
	fhi (0.169578)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	ova (0.129132)
	pgl (0.118483)
	spc (0.113366)
	eje (0.0988338)