Ss1.1-Utr1-UTR010072C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACAGAGAAGCGGGGCGGACCGAGAGGAGCGGAGCGGAGGGAGCTCTTGAGAGCCACGG CCGCCGCCACTGCCGCGGCAGGGGCGTGGAGGGCAGGGGGCGGCCCGGGCCGCGGTTGCA AACATGGCTCAAAGCAGAGATGGTGGAAACCCCTTCGCCGAGCCCGGCGAGCTTGACAAC CCCTTTCAGGACCCAGCTGTGATCCAGCACCGACCCAGCCCGCAGTATGCCACGCTTGAC GTCTACAACCCTTTTGAGACCCGGGAGCCACCACCAAGCTATGAGCCTCCTGCCCCTGTT CCAGTTGCACCACCCTCAGCCGCCCCCTTGCAGTCCTCGAGAAAGCTCAGCCCCACAGAA CCCAAGAACTATGGTTCCTACAGCACCCAGGCTTCAGCTGCAGCAGCCACAGCTGAACTG CTAAAGAAGCAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGGAGGGAGCGAGAG CTGCAGCATGCTGCCCTGGGGGGCACAGCTACTCGACAGAACAATTGGCCTCCTCTACCT TCGTTTTGCCCAGTTCAGCCCTGCTTCTTCCAGGACATCTCTATGGAGATCCCCCAAGAA TTTCAGAAGACAGTATCCACGATGTACTACCTCTGGATGTGCAGCACCCTGGCTCTTCTC CTGAATTTCCTCGCCTGCCTGGCTAGCTTCTGTGTGGAGACCAACACTGGCTCAGGCTTC GGGCTCTCAATCCTCTGGATCCTCCTGTTCACTCCCTGCTCCTTCGTCTGCTGGTACCGT CCCATGTATAAGGCCTTCCGGAGTGACAGTTCATTCAATTTCTTCGTTTTCTTCTTCATT TTCTTCGTCCAGGATGTCCTATATGTTCTGCAGGCCATTGGCATCCCAGGTTGGGGGTTC AGTGGCTGGATCTCCGCTTTGATGTTGGTGAACACCAACGCGGCTGTAGCTGTGCTTATG CTGCTGGTCGCCCTGTTCTTCACTGGCATCGCTGTGCTGGGAATTGTGATGCTAAAGCGG ATCCACTCCTTGTATCGCCGCACGGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCT GCCGGTGTCTTCTCCAACCCTGCGGTGCGAACTGCAGCTGCCAATGCAGCCGCTGGAGCT GCCGAAAATGCCTTCCGGGCCCCGTGACCCCTGACTGGGATGCTCTGGCCCTGCCACTTG AGGGAGCTGACCTAGCCCCCATCCCTGAGGTCTCTGGGACTTTGTGAGACTTCACTACTT GATGTCTCCGCTCTAGTGCCCCCAGTCTCACAGCCATGACTGCTGAACCTGACTTAAGGG TGTCGAGAGCCCCCTGTGACCCAGTCACTGCTTCCCTCCCACCCGCCAAATCAGGCCACA CTGCTGCCACCTCTACACACCCCAACCCAGCTTCCCTCTGCTGTGCCAAGGCTGTTGCTT CGGTTATTTAAATAAAAAGAAAGTGGAACTGGAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACAGAGAAGCGGGGCGGACCGAGAGGAGCGGAGCGGAGGGAGCTCTTGAGAGCCACGG CCGCCGCCACTGCCGCGGCAGGGGCGTGGAGGGCAGGGGGCGGCCCGGGCCGCGGTTGCA AACATGGCTCAAAGCAGAGATGGTGGAAACCCCTTCGCCGAGCCCGGCGAGCTTGACAAC CCCTTTCAGGACCCAGCTGTGATCCAGCACCGACCCAGCCCGCAGTATGCCACGCTTGAC GTCTACAACCCTTTTGAGACCCGGGAGCCACCACCAAGCTATGAGCCTCCTGCCCCTGTT CCAGTTGCACCACCCTCAGCCGCCCCCTTGCAGTCCTCGAGAAAGCTCAGCCCCACAGAA CCCAAGAACTATGGTTCCTACAGCACCCAGGCTTCAGCTGCAGCAGCCACAGCTGAACTG CTAAAGAAGCAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGGAGGGAGCGAGAG CTGCAGCATGCTGCCCTGGGGGGCACAGCTACTCGACAGAACAATTGGCCTCCTCTACCT TCGTTTTGCCCAGTTCAGCCCTGCTTCTTCCAGGACATCTCTATGGAGATCCCCCAAGAA TTTCAGAAGACAGTATCCACGATGTACTACCTCTGGATGTGCAGCACCCTGGCTCTTCTC CTGAATTTCCTCGCCTGCCTGGCTAGCTTCTGTGTGGAGACCAACACTGGCTCAGGCTTC GGGCTCTCAATCCTCTGGATCCTCCTGTTCACTCCCTGCTCCTTCGTCTGCTGGTACCGT CCCATGTATAAGGCCTTCCGGAGTGACAGTTCATTCAATTTCTTCGTTTTCTTCTTCATT TTCTTCGTCCAGGATGTCCTATATGTTCTGCAGGCCATTGGCATCCCAGGTTGGGGGTTC AGTGGCTGGATCTCCGCTTTGATGTTGGTGAACACCAACGCGGCTGTAGCTGTGCTTATG CTGCTGGTCGCCCTGTTCTTCACTGGCATCGCTGTGCTGGGAATTGTGATGCTAAAGCGG ATCCACTCCTTGTATCGCCGCACGGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCT GCCGGTGTCTTCTCCAACCCTGCGGTGCGAACTGCAGCTGCCAATGCAGCCGCTGGAGCT GCCGAAAATGCCTTCCGGGCCCCGTGACCCCTGACTGGGATGCTCTGGCCCTGCCACTTG AGGGAGCTGACCTAGCCCCCATCCCTGAGGTCTCTGGGACTTTGTGAGACTTCACTACTT GATGTCTCCGCTCTAGTGCCCCCAGTCTCACAGCCATGACTGCTGAACCTGACTTAAGGG TGTCGAGAGCCCCCTGTGACCCAGTCACTGCTTCCCTCCCACCCGCCAAATCAGGCCACA CTGCTGCCACCTCTACACACCCCAACCCAGCTTCCCTCTGCTGTGCCAAGGCTGTTGCTT CGGTTATTTAAATAAAAAGAAAGTGGAACTGGAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 388-1287, - strand, RNAz p=0.998002 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 388-1287, - strand, RNAz p=0.998002 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-190, gnl|bosTau2|chr3 (10310198-10310386) | |
| 1-190, gnl|canFam2|chr7 (45268073-45267360) | |
| 1-190, gnl|echTel1|scaffold_312049 (129352-128491) | |
| 1-190, gnl|hg17|chr1 (152044803-152045748) | |
| 1-190, gnl|Hg17|chr1 (152045132-152044949) | |
| 1-190, gnl|loxAfr1|scaffold_5844 (4576-3673) | |
| 1-190, gnl|mm7|chr3 (89304204-89303323) | |
| 1-190, gnl|Mm7|chr3 (89303890-89304068) | |
| 1-190, gnl|monDom2|scaffold_59 (2459560-2458591) | |
| 1-190, gnl|oryCun1|scaffold_199674 (115241-116182) | |
| 1-190, gnl|panTro1|chr1 (134036594-134037539) | |
| 1-190, gnl|rheMac2|chr1 (133818375-133819314) | |
| 1-190, gnl|rn3|chr2 (181208337-181207462) | |
| 388-511, gnl|bosTau2|chr3 (10311646-10311769) | |
| 388-511, gnl|Hg17|chr1 (152043317-152043194) | |
| 388-511, gnl|Mm7|chr3 (89305724-89305847) | |
| 512-641, gnl|bosTau2|chr3 (10312241-10312370) | |
| 512-641, gnl|canFam2|chr7 (45269839-45269645) | |
| 512-641, gnl|danRer3|chr8 (12727933-12728091) | |
| 512-641, gnl|dasNov1|scaffold_4180 (3711-3546) | |
| 512-641, gnl|echTel1|scaffold_312049 (131301-131114) | |
| 512-641, gnl|fr1|chrUn (189300407-189300258) | |
| 512-641, gnl|hg17|chr1 (152041674-152041866) | |
| 512-641, gnl|Hg17|chr1 (152041818-152041689) | |
| 512-641, gnl|loxAfr1|scaffold_20577 (32245-32441) | |
| 512-641, gnl|mm7|chr3 (89306807-89306619) | |
| 512-641, gnl|Mm7|chr3 (89306662-89306791) | |
| 512-641, gnl|monDom2|scaffold_59 (2461510-2461312) | |
| 512-641, gnl|oryCun1|scaffold_199674 (113212-113404) | |
| 512-641, gnl|panTro1|chr1 (134033461-134033653) | |
| 512-641, gnl|rheMac2|chr1 (133814412-133814605) | |
| 512-641, gnl|rn3|chr2 (181211323-181211146) | |
| 512-641, gnl|tetNig1|chr21_random (2092700-2092524) | |
| 512-641, gnl|xenTro1|scaffold_183 (1774750-1774925) | |
| 650-801, gnl|bosTau2|chr21 (23032895-23032744) | |
| 650-801, gnl|canFam2|chr30 (40908009-40908166) | |
| 650-801, gnl|danRer3|chr3 (3568297-3568454) | |
| 650-801, gnl|dasNov1|scaffold_45490 (39767-39608) | |
| 650-801, gnl|echTel1|scaffold_312049 (131686-131532) | |
| 650-801, gnl|fr1|chrUn (111084131-111083974) | |
| 650-801, gnl|galGal2|chr10 (318919-319076) | |
| 650-801, gnl|hg17|chr15 (72929903-72930060) | |
| 650-801, gnl|Hg17|chr15 (72930058-72929907) | |
| 650-801, gnl|loxAfr1|scaffold_20577 (31440-31597) | |
| 650-801, gnl|mm7|chr9 (57609322-57609165) | |
| 650-801, gnl|Mm7|chr9 (57609165-57609316) | |
| 650-801, gnl|monDom2|scaffold_41 (2637137-2636980) | |
| 650-801, gnl|oryCun1|scaffold_140068 (4117-4274) | |
| 650-801, gnl|panTro1|chr16_random (22057869-22058026) | |
| 650-801, gnl|rheMac2|chr7 (53660113-53660270) | |
| 650-801, gnl|rn3|chr8 (61354569-61354412) | |
| 650-801, gnl|tetNig1|chrUn_random (25904334-25904491) | |
| 650-801, gnl|xenTro1|scaffold_287 (1192215-1192058) | |
| 1017-1476, gnl|bosTau2|chr3 (10314079-10314531) | |
| 1017-1476, gnl|Hg17|chr1 (152039287-152038847) | |
| 1017-1476, gnl|Mm7|chr3 (89308705-89309177) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-190, gnl|bosTau2|chr3 (10310198-10310386) | |
| 1-190, gnl|canFam2|chr7 (45268073-45267360) | |
| 1-190, gnl|echTel1|scaffold_312049 (129352-128491) | |
| 1-190, gnl|hg17|chr1 (152044803-152045748) | |
| 1-190, gnl|Hg17|chr1 (152045132-152044949) | |
| 1-190, gnl|loxAfr1|scaffold_5844 (4576-3673) | |
| 1-190, gnl|mm7|chr3 (89304204-89303323) | |
| 1-190, gnl|Mm7|chr3 (89303890-89304068) | |
| 1-190, gnl|monDom2|scaffold_59 (2459560-2458591) | |
| 1-190, gnl|oryCun1|scaffold_199674 (115241-116182) | |
| 1-190, gnl|panTro1|chr1 (134036594-134037539) | |
| 1-190, gnl|rheMac2|chr1 (133818375-133819314) | |
| 1-190, gnl|rn3|chr2 (181208337-181207462) | |
| 388-511, gnl|bosTau2|chr3 (10311646-10311769) | |
| 388-511, gnl|Hg17|chr1 (152043317-152043194) | |
| 388-511, gnl|Mm7|chr3 (89305724-89305847) | |
| 512-641, gnl|bosTau2|chr3 (10312241-10312370) | |
| 512-641, gnl|canFam2|chr7 (45269839-45269645) | |
| 512-641, gnl|danRer3|chr8 (12727933-12728091) | |
| 512-641, gnl|dasNov1|scaffold_4180 (3711-3546) | |
| 512-641, gnl|echTel1|scaffold_312049 (131301-131114) | |
| 512-641, gnl|fr1|chrUn (189300407-189300258) | |
| 512-641, gnl|hg17|chr1 (152041674-152041866) | |
| 512-641, gnl|Hg17|chr1 (152041818-152041689) | |
| 512-641, gnl|loxAfr1|scaffold_20577 (32245-32441) | |
| 512-641, gnl|mm7|chr3 (89306807-89306619) | |
| 512-641, gnl|Mm7|chr3 (89306662-89306791) | |
| 512-641, gnl|monDom2|scaffold_59 (2461510-2461312) | |
| 512-641, gnl|oryCun1|scaffold_199674 (113212-113404) | |
| 512-641, gnl|panTro1|chr1 (134033461-134033653) | |
| 512-641, gnl|rheMac2|chr1 (133814412-133814605) | |
| 512-641, gnl|rn3|chr2 (181211323-181211146) | |
| 512-641, gnl|tetNig1|chr21_random (2092700-2092524) | |
| 512-641, gnl|xenTro1|scaffold_183 (1774750-1774925) | |
| 650-801, gnl|bosTau2|chr21 (23032895-23032744) | |
| 650-801, gnl|canFam2|chr30 (40908009-40908166) | |
| 650-801, gnl|danRer3|chr3 (3568297-3568454) | |
| 650-801, gnl|dasNov1|scaffold_45490 (39767-39608) | |
| 650-801, gnl|echTel1|scaffold_312049 (131686-131532) | |
| 650-801, gnl|fr1|chrUn (111084131-111083974) | |
| 650-801, gnl|galGal2|chr10 (318919-319076) | |
| 650-801, gnl|hg17|chr15 (72929903-72930060) | |
| 650-801, gnl|Hg17|chr15 (72930058-72929907) | |
| 650-801, gnl|loxAfr1|scaffold_20577 (31440-31597) | |
| 650-801, gnl|mm7|chr9 (57609322-57609165) | |
| 650-801, gnl|Mm7|chr9 (57609165-57609316) | |
| 650-801, gnl|monDom2|scaffold_41 (2637137-2636980) | |
| 650-801, gnl|oryCun1|scaffold_140068 (4117-4274) | |
| 650-801, gnl|panTro1|chr16_random (22057869-22058026) | |
| 650-801, gnl|rheMac2|chr7 (53660113-53660270) | |
| 650-801, gnl|rn3|chr8 (61354569-61354412) | |
| 650-801, gnl|tetNig1|chrUn_random (25904334-25904491) | |
| 650-801, gnl|xenTro1|scaffold_287 (1192215-1192058) | |
| 1017-1476, gnl|bosTau2|chr3 (10314079-10314531) | |
| 1017-1476, gnl|Hg17|chr1 (152039287-152038847) | |
| 1017-1476, gnl|Mm7|chr3 (89308705-89309177) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cly (0.361925) | |
| duo (0.345602) | |
| hlv (0.278513) | |
| ebs (0.236602) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.361925) | |
| duo (0.345602) | |
| hlv (0.278513) | |
| ebs (0.236602) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |