Non-Coding RNA Search

Ss1.1-Utr1-UTR010072G08.5

Sequence:


               
               GAATAGGCTATCCATCCTGCAATGTTATGTCCTATCCATCCTGCAATAGTTGGAATAGGC
TATCCATCCTGCAATGTTATGTCCTATACATTATATTCAAAAATTCTGGGACCAAAACCT
CAGGGTGTGTACATGGGTTGGTTAACAGCATCTGGAAGTGCAGCACGGATTCTTGGACCT
GTGTTCATCAGCCAAGTGTATACTGCCTGGGGCCCACGATGGGCTTTCAGCCTTGTGTGT
GGGCTAGTGTTGCTTACCATCACACTCCTGGGTGTGGTTTACAAAAGACTCATTGCTTTC
TCTGTGAGGCATGGAGGAATTCAGGAGTAACTTAGCTAAGTCTGTGATGGAAAGTACTTG
TCATGTAGACCTTCCTCTTTTAAGGCTCTGCTAGACAGTTGCTAGTAGTCAGTTTCCCAA
AATCAGGTTGGAGGTACTGTATGCTTTGAATAACAAGAATATTTATTCAATAACACAGGG
AATTCTATGTGTAAGTGTGAATAACAAGATAACATAAAAAACTCTGGATCATAGTTTCCT
TATCTCAAAAAAAAAATAGTCTTCATATAATTTTTGGGGAGGTGTGTAGCATGAACTCAT
GTGTGAAAGGACAGTGGCCTATAAATGGGAAGTTACACTCTTAATTCAAACTGTCATTAA
AATAACAAGAGACTATCTATGCAGTGAAATCATAGAGAGAGTTCTTTATTTTAGGGCCGT
ACCTGCGGTATATCAAAGTTCCCAGGCTAGGGTTCAAATTGGAGCTGCGGCTGCCGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAGGCTATCCATCCTGCAATGTTATGTCCTATCCATCCTGCAATAGTTGGAATAGGC
TATCCATCCTGCAATGTTATGTCCTATACATTATATTCAAAAATTCTGGGACCAAAACCT
CAGGGTGTGTACATGGGTTGGTTAACAGCATCTGGAAGTGCAGCACGGATTCTTGGACCT
GTGTTCATCAGCCAAGTGTATACTGCCTGGGGCCCACGATGGGCTTTCAGCCTTGTGTGT
GGGCTAGTGTTGCTTACCATCACACTCCTGGGTGTGGTTTACAAAAGACTCATTGCTTTC
TCTGTGAGGCATGGAGGAATTCAGGAGTAACTTAGCTAAGTCTGTGATGGAAAGTACTTG
TCATGTAGACCTTCCTCTTTTAAGGCTCTGCTAGACAGTTGCTAGTAGTCAGTTTCCCAA
AATCAGGTTGGAGGTACTGTATGCTTTGAATAACAAGAATATTTATTCAATAACACAGGG
AATTCTATGTGTAAGTGTGAATAACAAGATAACATAAAAAACTCTGGATCATAGTTTCCT
TATCTCAAAAAAAAAATAGTCTTCATATAATTTTTGGGGAGGTGTGTAGCATGAACTCAT
GTGTGAAAGGACAGTGGCCTATAAATGGGAAGTTACACTCTTAATTCAAACTGTCATTAA
AATAACAAGAGACTATCTATGCAGTGAAATCATAGAGAGAGTTCTTTATTTTAGGGCCGT
ACCTGCGGTATATCAAAGTTCCCAGGCTAGGGTTCAAATTGGAGCTGCGGCTGCCGGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-237, + strand, RNAz p=0.575896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, + strand, RNAz p=0.575896

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               118-709, gnl|bosTau2|chr17 (18620372-18619775)
               

               
               118-709, gnl|Hg17|chr4 (129199602-129199018)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-709, gnl|bosTau2|chr17 (18620372-18619775)
               

               
               118-709, gnl|Hg17|chr4 (129199602-129199018)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	118-709, gnl\|bosTau2\|chr17 (18620372-18619775)
	118-709, gnl\|Hg17\|chr4 (129199602-129199018)