Non-Coding RNA Search

Ss1.1-Utr1-UTR010074A01.5

Sequence:


               
               CGGAGACGGGCGCGGGCGGAGGACGCGGGCTGACTGTGCGCGCCGACCATGGCCTCCAAG
TGCCCCAAGTGCGACAAGACCGTGTACTTCGCTGAGAAGGTGAGCTCCCTGGGCAAGGAC
TGGCACAGATTCTGCCTCAGGTGCGAACACTGCAGCAAGACGCTGACGCCCGGGGGCCAT
GCCGAGCACGACGGGAAGCCCTTCTGCCACAAGCCCTGCTATGCCACGCTGTTCGGACCC
AAAGGGGTGAATATCGGTGGAGCCGGGTCCTACATCTACGAGAAGCCCTCTGCAGAGAGA
CCTCAGGTCACTGGCCCCATCGAGGTCCCCGTGGCCCGAGCTGAGGAGCGGAAGGCCGGC
GGCCCCCCTAAGGGGCCCAGCAAAGCCTCCAGCGTCACCACGTTCACCGGGGAGCCCAAC
ATGTGTCCTCGCTGCAACAAGAGGGTCTATTTCGCCGAGAAAGTGACGTCTCTGGGCAAG
GACTGGCACCGGCCGTGCCTGCGCTGCGAGCGCTGCGGGAAGACTCTCACCCCGGGCGGG
CACGCGGAGCACGACGGCCAGCCCTACTGCCACAAGCCCTGCTACGGAATACTCTTCGGA
CCCAAGGGAGTGAACACCGGAGCCGTGGGCAGCTACATCTATGACAAGGACCCCGAGGGC
AAAGTTCAGCCCTAGGCCCCCAGCCCCCTCTGCGGGCCTCGGGCCCATCCGCGCAGGCCC
CTGGCCCAGGGCCCACCGCTTGGCTCTGTGGGGGAGCGGCCCCCGCCCAGTCCCAGCTCA
GCACCCATCCGTTGGCGGCGGCGGCGCCCGGGTGTGGAGAGGAGGAAGCCCGCTGCACCA
ACTCCAGGGCCTGCCCACCCACCCCTTTTCTCTGGGTGTGTCTGCCCTTGTGTCCCCAGC
CGACCCTTACCCTCTTTTGTGTCCTCCCGGCCCCCCGTGTGCCCATGTCTGCGTCTCCTG
GCCCCACATGCCCCCGTGTGTCCCTTGGTCCTGGGTGGGCCTTCCTGAGCGGGCCGCCCC
ACTCGCCCCTCCTGCTGCCCCGTTCCTGCCCCACAGTGTTATTTATGCCTCCCTGGCCGG
TGACAGGCACGGTCTCGCCCCTCACAGTGTTCCCAAGTGGAGGGCGGCCTGCCTGGAGCC
CTCTGCCCGTCTCCCACGCTGCCACGCCAGCACCCGCCCCTCACCCTCACATGGTTCACA
CTCAGCTGCGGGACTTCTGCTGCCAATAAAGGGTTTGAGGATCGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGACGGGCGCGGGCGGAGGACGCGGGCTGACTGTGCGCGCCGACCATGGCCTCCAAG
TGCCCCAAGTGCGACAAGACCGTGTACTTCGCTGAGAAGGTGAGCTCCCTGGGCAAGGAC
TGGCACAGATTCTGCCTCAGGTGCGAACACTGCAGCAAGACGCTGACGCCCGGGGGCCAT
GCCGAGCACGACGGGAAGCCCTTCTGCCACAAGCCCTGCTATGCCACGCTGTTCGGACCC
AAAGGGGTGAATATCGGTGGAGCCGGGTCCTACATCTACGAGAAGCCCTCTGCAGAGAGA
CCTCAGGTCACTGGCCCCATCGAGGTCCCCGTGGCCCGAGCTGAGGAGCGGAAGGCCGGC
GGCCCCCCTAAGGGGCCCAGCAAAGCCTCCAGCGTCACCACGTTCACCGGGGAGCCCAAC
ATGTGTCCTCGCTGCAACAAGAGGGTCTATTTCGCCGAGAAAGTGACGTCTCTGGGCAAG
GACTGGCACCGGCCGTGCCTGCGCTGCGAGCGCTGCGGGAAGACTCTCACCCCGGGCGGG
CACGCGGAGCACGACGGCCAGCCCTACTGCCACAAGCCCTGCTACGGAATACTCTTCGGA
CCCAAGGGAGTGAACACCGGAGCCGTGGGCAGCTACATCTATGACAAGGACCCCGAGGGC
AAAGTTCAGCCCTAGGCCCCCAGCCCCCTCTGCGGGCCTCGGGCCCATCCGCGCAGGCCC
CTGGCCCAGGGCCCACCGCTTGGCTCTGTGGGGGAGCGGCCCCCGCCCAGTCCCAGCTCA
GCACCCATCCGTTGGCGGCGGCGGCGCCCGGGTGTGGAGAGGAGGAAGCCCGCTGCACCA
ACTCCAGGGCCTGCCCACCCACCCCTTTTCTCTGGGTGTGTCTGCCCTTGTGTCCCCAGC
CGACCCTTACCCTCTTTTGTGTCCTCCCGGCCCCCCGTGTGCCCATGTCTGCGTCTCCTG
GCCCCACATGCCCCCGTGTGTCCCTTGGTCCTGGGTGGGCCTTCCTGAGCGGGCCGCCCC
ACTCGCCCCTCCTGCTGCCCCGTTCCTGCCCCACAGTGTTATTTATGCCTCCCTGGCCGG
TGACAGGCACGGTCTCGCCCCTCACAGTGTTCCCAAGTGGAGGGCGGCCTGCCTGGAGCC
CTCTGCCCGTCTCCCACGCTGCCACGCCAGCACCCGCCCCTCACCCTCACATGGTTCACA
CTCAGCTGCGGGACTTCTGCTGCCAATAAAGGGTTTGAGGATCGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|54696684|gb|AAV38714.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|54696684|gb|AAV38714.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               56-263, gnl|bosTau2|chr12 (8307618-8307411)
               

               
               56-263, gnl|Hg17|chr22 (23432817-23433021)
               

               
               56-263, gnl|Mm7|chr12 (110677026-110678544)
               


               
               420-608, gnl|bosTau2|chr12 (8307617-8307429)
               

               
               420-608, gnl|Hg17|chr22 (23432818-23433003)
               

               
               420-608, gnl|Mm7|chr12 (110677027-110678526)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-263, gnl|bosTau2|chr12 (8307618-8307411)
               

               
               56-263, gnl|Hg17|chr22 (23432817-23433021)
               

               
               56-263, gnl|Mm7|chr12 (110677026-110678544)
               


               
               420-608, gnl|bosTau2|chr12 (8307617-8307429)
               

               
               420-608, gnl|Hg17|chr22 (23432818-23433003)
               

               
               420-608, gnl|Mm7|chr12 (110677027-110678526)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               hlv (0.974795)
               

               
               nlu (0.766724)
               

               
               pla (0.66836)
               

               
               med (0.58126)
               

               
               ecc (0.575175)
               

               
               cga (0.558191)
               

               
               ece (0.45861)
               

               
               pty (0.428143)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               jca (0.34188)
               

               
               nmm (0.265604)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.974795)
               

               
               nlu (0.766724)
               

               
               pla (0.66836)
               

               
               med (0.58126)
               

               
               ecc (0.575175)
               

               
               cga (0.558191)
               

               
               ece (0.45861)
               

               
               pty (0.428143)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               jca (0.34188)
               

               
               nmm (0.265604)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	56-263, gnl\|bosTau2\|chr12 (8307618-8307411)
	56-263, gnl\|Hg17\|chr22 (23432817-23433021)
	56-263, gnl\|Mm7\|chr12 (110677026-110678544)

	420-608, gnl\|bosTau2\|chr12 (8307617-8307429)
	420-608, gnl\|Hg17\|chr22 (23432818-23433003)
	420-608, gnl\|Mm7\|chr12 (110677027-110678526)

	hlv (0.974795)
	nlu (0.766724)
	pla (0.66836)
	med (0.58126)
	ecc (0.575175)
	cga (0.558191)
	ece (0.45861)
	pty (0.428143)
	nep (0.36785)
	eep (0.367692)
	ebs (0.354904)
	jca (0.34188)
	nmm (0.265604)
	cty (0.20816)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	ute (0.132784)
	ese (0.126502)