Non-Coding RNA Search

Ss1.1-Utr1-UTR010074B04.5

Sequence:


               
               CTGCCGCTCTTCAGGCGCTGCATTTTCCTCTCTCATTTTTCTCCACGCGGGGCCGTGCCC
TGCTCCGTAGTCTTCGTCACGCGCTCAGCACCTCTGCTTCTCTCGTGGCCCCCTCACCAT
GGCGGGCATTCTGTTCGAGGATATTTTTGATGTGAAAGACATTGACCCAGAGGGCAAGAA
GTTTGACCGAGTGTCTCGACTGCATTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTT
AGATGTAAACATTCAGATTTATCCTGTTGACCTGGGTGACAAGTTCCGGTTGGTGATAGC
CAGTACTTTGTATGAAGATGGTACTCTGGATGATGGTGAATACAACCCCACAGATGATAG
GCCTTCCAGGGCTGACCAATTTGAGTATGTAATGTATGGGAAAGTGTACAGGATTGAGGG
AGATGAAACTTCTACTGAGGCAGCAACACGCCTCTCTGCCTATGTGTCCTATGGTGGCCT
GCTCATGAGGCTGCAGGGTGATGCCAACAACCTGCATGGATTTGAAGTGGATTCCAGAGT
TTATCTGCTGATGAAGAAACTGGCCTTCTGAACTACCCAGGAAGCCTACCTGGTTGCTTA
GTCACTCAGGTCATGGACATTAATTCAAGCCTGAGTAGCAGTTGCTGTTGGTCACCTGTT
CGGGAGGGCTGGCTCTGTGTCACTGTGCGTGTATCTTTAGGAGGTTTGGACTCAGTGGGA
AACACCTGTTTGTGAAAGATCCAGTGTTTTGGCAAGCTTAAAATGAATCAGAAATTGTTC
TGTGTATATGATTTTTTAATTAAACTTTACTTTTTCAGACTCTTCCCCCCACCCCCTTTG
GCCATGCCCACAGCTTGCCGACGTTTTTGGGCCAGGGATCAAACCTGTACCACAGCAGTG
ACCCAAGCCATGCAGTGACATCACCAGATCCTTAACCCTGAGACACCAGTGAACTCTTCT
CCTTCCTTTAAAAAAACCTTTTTTTTCTGTTTACTTTAAAGTTGTTTTTTCTGGGAGTTC
CCATTGTGGCTCAGTGGGTTAGGAACCCCATAGTATTTTGTGAGGATGCAGGTTTGATCC
CTGGCCTCACTTAGTGGATTAAAGATCCAGTGTTGCCATAAGATGCAGCATAGGCCACAG
ATGTGGCTCAGATCTGGTGTGGCTGTGGCTGTGGCCTCAGCTGCAGCTTCGATTTGACCC
CAGTCCGGGAACTTCCATATGACACAGGTGCAGCTGTAAAAAAAAAAAATGGTAACAATA
AAATTATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGCTCTTCAGGCGCTGCATTTTCCTCTCTCATTTTTCTCCACGCGGGGCCGTGCCC
TGCTCCGTAGTCTTCGTCACGCGCTCAGCACCTCTGCTTCTCTCGTGGCCCCCTCACCAT
GGCGGGCATTCTGTTCGAGGATATTTTTGATGTGAAAGACATTGACCCAGAGGGCAAGAA
GTTTGACCGAGTGTCTCGACTGCATTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTT
AGATGTAAACATTCAGATTTATCCTGTTGACCTGGGTGACAAGTTCCGGTTGGTGATAGC
CAGTACTTTGTATGAAGATGGTACTCTGGATGATGGTGAATACAACCCCACAGATGATAG
GCCTTCCAGGGCTGACCAATTTGAGTATGTAATGTATGGGAAAGTGTACAGGATTGAGGG
AGATGAAACTTCTACTGAGGCAGCAACACGCCTCTCTGCCTATGTGTCCTATGGTGGCCT
GCTCATGAGGCTGCAGGGTGATGCCAACAACCTGCATGGATTTGAAGTGGATTCCAGAGT
TTATCTGCTGATGAAGAAACTGGCCTTCTGAACTACCCAGGAAGCCTACCTGGTTGCTTA
GTCACTCAGGTCATGGACATTAATTCAAGCCTGAGTAGCAGTTGCTGTTGGTCACCTGTT
CGGGAGGGCTGGCTCTGTGTCACTGTGCGTGTATCTTTAGGAGGTTTGGACTCAGTGGGA
AACACCTGTTTGTGAAAGATCCAGTGTTTTGGCAAGCTTAAAATGAATCAGAAATTGTTC
TGTGTATATGATTTTTTAATTAAACTTTACTTTTTCAGACTCTTCCCCCCACCCCCTTTG
GCCATGCCCACAGCTTGCCGACGTTTTTGGGCCAGGGATCAAACCTGTACCACAGCAGTG
ACCCAAGCCATGCAGTGACATCACCAGATCCTTAACCCTGAGACACCAGTGAACTCTTCT
CCTTCCTTTAAAAAAACCTTTTTTTTCTGTTTACTTTAAAGTTGTTTTTTCTGGGAGTTC
CCATTGTGGCTCAGTGGGTTAGGAACCCCATAGTATTTTGTGAGGATGCAGGTTTGATCC
CTGGCCTCACTTAGTGGATTAAAGATCCAGTGTTGCCATAAGATGCAGCATAGGCCACAG
ATGTGGCTCAGATCTGGTGTGGCTGTGGCTGTGGCCTCAGCTGCAGCTTCGATTTGACCC
CAGTCCGGGAACTTCCATATGACACAGGTGCAGCTGTAAAAAAAAAAAATGGTAACAATA
AAATTATTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27690884|ref|XP_221194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27690884|ref|XP_221194.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               36-191, gnl|bosTau2|chr1 (52148592-52148435)
               

               
               36-191, gnl|Hg17|chr3 (185563900-185564055)
               

               
               36-191, gnl|Mm7|chr16 (20267898-20268051)
               


               
               454-824, gnl|bosTau2|chr1 (52145636-52145265)
               

               
               454-824, gnl|Hg17|chr3 (185568667-185569033)
               

               
               454-824, gnl|Mm7|chr16 (20271967-20272329)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-191, gnl|bosTau2|chr1 (52148592-52148435)
               

               
               36-191, gnl|Hg17|chr3 (185563900-185564055)
               

               
               36-191, gnl|Mm7|chr16 (20267898-20268051)
               


               
               454-824, gnl|bosTau2|chr1 (52145636-52145265)
               

               
               454-824, gnl|Hg17|chr3 (185568667-185569033)
               

               
               454-824, gnl|Mm7|chr16 (20271967-20272329)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               che (0.272628)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	36-191, gnl\|bosTau2\|chr1 (52148592-52148435)
	36-191, gnl\|Hg17\|chr3 (185563900-185564055)
	36-191, gnl\|Mm7\|chr16 (20267898-20268051)

	454-824, gnl\|bosTau2\|chr1 (52145636-52145265)
	454-824, gnl\|Hg17\|chr3 (185568667-185569033)
	454-824, gnl\|Mm7\|chr16 (20271967-20272329)

	che (0.272628)
	ute (0.265569)
	cly (0.241284)
	clu (0.239292)
	med (0.232504)
	ecc (0.23007)
	ece (0.229305)
	jca (0.22792)
	cty (0.20816)
	jej (0.197844)
	col (0.195008)
	sin (0.174948)
	mcp (0.170648)
	cki (0.165235)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	isp (0.150376)
	pty (0.142714)
	nca (0.136874)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	spc (0.113366)