Non-Coding RNA Search

Ss1.1-Utr1-UTR010074B10.5

Sequence:


               
               CCGGAGACGGAGCCTCCACGACTCCCAGCCTCCTCCTCGCCGCCGCCGCCTCTCCTCCTC
CTCCTATTCCTCCTCCTCCTCCCTCGCTCCCACACCATGTCTGCTTAGACCTGAGCAGCC
CCACAGCGAACTCGGCAGCCGCCGCCACACCGCAGCAAGGACAGCCGCCACCGCCAGTGA
ATGATGACAGGGGTGTTTGACAGGAGGGTCCCCAGCATCCGATCCGGCGACTTCCAAGCC
CCGTTCCAGACGTCCGCAGCCATGCACCATCCGTCTCAGGAATCGCCAACTTTGCCCGAG
TCGTCGGCTACCGATTCCGACTACTACAGCCCCACGGGGGGAGCCCCGCACGGCTACTGC
TCTCCTACCTCGGCTTCCTACGGGAAAGCGCTCAACCCCTACCAGTACCAGTACCCCGGC
GTGAGCGGCTCCGCCGGCAGCTATCCCGCCAAAGCTTACGCCGACTACAGCTACGCCAGC
CCCTATCACCAGTACGGCGGCGCCTACAACCGCGTCCCGAGCGCCACCAGCCAGCCAGAG
AAAGAAGTGGCCGAGCCCGAGGTGAGAATGGTGAACGGCAAACCAAAGAAAGTTCGTAAA
CCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCGTTACAGAGAAGGTTTCAGAAGACT
CAGTACCTCGCCCTGCCCGAACGCGCCGAGCTGGCCGCCTCGCTGGGACTGACGCAAACA
CAGGTGAAAATCTGGTTTCAGAACAAAAGATCCAAGATCAAGAAGATAATGAAAAACGGG
GAGATGCCCCCGGAGCACAGCCCCAGCTCCAGCGACCCCATGGCGTGTAACTCGCCGCAG
TCTCCGGCTGTGTGGGAGCCCCAGGGTTCGTCCCGCTCGCTCAGCCACCACCCTCATGCC
CACCCTCCGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGG
TACCCGAGCGCGGCCAGCTCAATCAATTCCCACGTGCCGCCGCCCGGCTCCTTGCAGCAC
CCGCTGGCGCTGGCCTCGGGGACGCTCTATTAGACCGGCCTCTTTCTCTTGCTCACTTTT
TTGGGACTACTGTGTTTTTGCTGTTTTAGAAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAGACGGAGCCTCCACGACTCCCAGCCTCCTCCTCGCCGCCGCCGCCTCTCCTCCTC
CTCCTATTCCTCCTCCTCCTCCCTCGCTCCCACACCATGTCTGCTTAGACCTGAGCAGCC
CCACAGCGAACTCGGCAGCCGCCGCCACACCGCAGCAAGGACAGCCGCCACCGCCAGTGA
ATGATGACAGGGGTGTTTGACAGGAGGGTCCCCAGCATCCGATCCGGCGACTTCCAAGCC
CCGTTCCAGACGTCCGCAGCCATGCACCATCCGTCTCAGGAATCGCCAACTTTGCCCGAG
TCGTCGGCTACCGATTCCGACTACTACAGCCCCACGGGGGGAGCCCCGCACGGCTACTGC
TCTCCTACCTCGGCTTCCTACGGGAAAGCGCTCAACCCCTACCAGTACCAGTACCCCGGC
GTGAGCGGCTCCGCCGGCAGCTATCCCGCCAAAGCTTACGCCGACTACAGCTACGCCAGC
CCCTATCACCAGTACGGCGGCGCCTACAACCGCGTCCCGAGCGCCACCAGCCAGCCAGAG
AAAGAAGTGGCCGAGCCCGAGGTGAGAATGGTGAACGGCAAACCAAAGAAAGTTCGTAAA
CCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCGTTACAGAGAAGGTTTCAGAAGACT
CAGTACCTCGCCCTGCCCGAACGCGCCGAGCTGGCCGCCTCGCTGGGACTGACGCAAACA
CAGGTGAAAATCTGGTTTCAGAACAAAAGATCCAAGATCAAGAAGATAATGAAAAACGGG
GAGATGCCCCCGGAGCACAGCCCCAGCTCCAGCGACCCCATGGCGTGTAACTCGCCGCAG
TCTCCGGCTGTGTGGGAGCCCCAGGGTTCGTCCCGCTCGCTCAGCCACCACCCTCATGCC
CACCCTCCGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGG
TACCCGAGCGCGGCCAGCTCAATCAATTCCCACGTGCCGCCGCCCGGCTCCTTGCAGCAC
CCGCTGGCGCTGGCCTCGGGGACGCTCTATTAGACCGGCCTCTTTCTCTTGCTCACTTTT
TTGGGACTACTGTGTTTTTGCTGTTTTAGAAAATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q810E0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q810E0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-513, - strand, RNAz p=0.720298

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-513, - strand, RNAz p=0.720298

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               2-538, gnl|bosTau2|chr4 (3236768-3236256)
               

               
               2-538, gnl|canFam2|chr14 (25033141-25033487)
               

               
               2-538, gnl|danRer3|chrNA (12573210-12572869)
               

               
               2-538, gnl|dasNov1|scaffold_10918 (119525-119871)
               

               
               2-538, gnl|echTel1|scaffold_320039 (2559-2213)
               

               
               2-538, gnl|fr1|chrUn (192363942-192364278)
               

               
               2-538, gnl|galGal2|chr2 (23748744-23749087)
               

               
               2-538, gnl|hg17|chr7 (96298226-96298572)
               

               
               2-538, gnl|Hg17|chr7 (96298780-96298232)
               

               
               2-538, gnl|loxAfr1|scaffold_19349 (60794-60431)
               

               
               2-538, gnl|mm7|chr6 (6834412-6834758)
               

               
               2-538, gnl|Mm7|chr6 (6834957-6834418)
               

               
               2-538, gnl|monDom2|scaffold_270 (273519-273160)
               

               
               2-538, gnl|oryCun1|scaffold_214613 (30550-30206)
               

               
               2-538, gnl|panTro1|chr6 (97931722-97932068)
               

               
               2-538, gnl|rheMac2|chr3 (120249085-120248739)
               

               
               2-538, gnl|rn3|chr4 (31900769-31901115)
               

               
               2-538, gnl|tetNig1|chr21_random (1124201-1123859)
               

               
               2-538, gnl|xenTro1|scaffold_420 (668186-667840)
               


               
               540-725, gnl|bosTau2|chr19 (29405190-29405375)
               

               
               540-725, gnl|Hg17|chr17 (45425946-45425761)
               

               
               540-725, gnl|Mm7|chr11 (95230754-95230939)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-538, gnl|bosTau2|chr4 (3236768-3236256)
               

               
               2-538, gnl|canFam2|chr14 (25033141-25033487)
               

               
               2-538, gnl|danRer3|chrNA (12573210-12572869)
               

               
               2-538, gnl|dasNov1|scaffold_10918 (119525-119871)
               

               
               2-538, gnl|echTel1|scaffold_320039 (2559-2213)
               

               
               2-538, gnl|fr1|chrUn (192363942-192364278)
               

               
               2-538, gnl|galGal2|chr2 (23748744-23749087)
               

               
               2-538, gnl|hg17|chr7 (96298226-96298572)
               

               
               2-538, gnl|Hg17|chr7 (96298780-96298232)
               

               
               2-538, gnl|loxAfr1|scaffold_19349 (60794-60431)
               

               
               2-538, gnl|mm7|chr6 (6834412-6834758)
               

               
               2-538, gnl|Mm7|chr6 (6834957-6834418)
               

               
               2-538, gnl|monDom2|scaffold_270 (273519-273160)
               

               
               2-538, gnl|oryCun1|scaffold_214613 (30550-30206)
               

               
               2-538, gnl|panTro1|chr6 (97931722-97932068)
               

               
               2-538, gnl|rheMac2|chr3 (120249085-120248739)
               

               
               2-538, gnl|rn3|chr4 (31900769-31901115)
               

               
               2-538, gnl|tetNig1|chr21_random (1124201-1123859)
               

               
               2-538, gnl|xenTro1|scaffold_420 (668186-667840)
               


               
               540-725, gnl|bosTau2|chr19 (29405190-29405375)
               

               
               540-725, gnl|Hg17|chr17 (45425946-45425761)
               

               
               540-725, gnl|Mm7|chr11 (95230754-95230939)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	2-538, gnl\|bosTau2\|chr4 (3236768-3236256)
	2-538, gnl\|canFam2\|chr14 (25033141-25033487)
	2-538, gnl\|danRer3\|chrNA (12573210-12572869)
	2-538, gnl\|dasNov1\|scaffold_10918 (119525-119871)
	2-538, gnl\|echTel1\|scaffold_320039 (2559-2213)
	2-538, gnl\|fr1\|chrUn (192363942-192364278)
	2-538, gnl\|galGal2\|chr2 (23748744-23749087)
	2-538, gnl\|hg17\|chr7 (96298226-96298572)
	2-538, gnl\|Hg17\|chr7 (96298780-96298232)
	2-538, gnl\|loxAfr1\|scaffold_19349 (60794-60431)
	2-538, gnl\|mm7\|chr6 (6834412-6834758)
	2-538, gnl\|Mm7\|chr6 (6834957-6834418)
	2-538, gnl\|monDom2\|scaffold_270 (273519-273160)
	2-538, gnl\|oryCun1\|scaffold_214613 (30550-30206)
	2-538, gnl\|panTro1\|chr6 (97931722-97932068)
	2-538, gnl\|rheMac2\|chr3 (120249085-120248739)
	2-538, gnl\|rn3\|chr4 (31900769-31901115)
	2-538, gnl\|tetNig1\|chr21_random (1124201-1123859)
	2-538, gnl\|xenTro1\|scaffold_420 (668186-667840)

	540-725, gnl\|bosTau2\|chr19 (29405190-29405375)
	540-725, gnl\|Hg17\|chr17 (45425946-45425761)
	540-725, gnl\|Mm7\|chr11 (95230754-95230939)