Ss1.1-Utr1-UTR010074E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGGTGGACACACAGGTGGTGTTGGCCATGCCCTACGACACACCCGTGCCTGGCTACC GCAACAACGTCGTCAATACCATGCGCCTGTGGTCTGCCAAGGCCCCCAATGACTTCAACC TCAAAGACTTCAACGTCGGTGGCTACATCCAGGCTGTGCTGGACCGCAACCTGGCTGAGA ACATTTCTCGGGTCCTGTACCCCAATGACAATTTCTTTGAAGGGAAGGAGCTACGGTTGA AGCAGGAGTACTTCGTGGTGGCGGCCACGCTCCAGGACATCATCCGCCGCTTCAAGTCCT CCAAGTTTGGCTGCCGTGACCCCGTGCGCACGAGCTTCGACGCCTTCCCGGATAAGGTGG CCATCCAGCTCAATGACACCCACCCTTCCTTGGCCATCCCTGAGCTGATGAGGATTCTGG TGGATGAGGAGCGGCTGGAGTGGGAGAAGGCATGGGACGTGACCGTGAGAACCTGTGCCT ACACCAACCACACGGTGCTGCCAGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGA CCCTGCTGCCCCGGCACCTCCAGATAATCTATGAGATCAACCAGCGCTTCCTTAATCGCG TGGCGGCCGCGTACCCTGGGGATGTAGACCGGCTGCGGCGCATGTCTCTGGTGGAGGAGG GCGCCGTGAAGCGCATCAACATGGCGCACCTGTGCATCGCCGGCTCGCACGCCGTCAACG GCGTGGCTCGCATCCACTCCGAGATCCTCAAGAAGACCATCTTCAAGGACTTCTACGAGC TGGAGCCTCATAAGTTCCAGAATAAGACCAACGGCATCACCCCTCGGCGCTGGCTAGTTA TGTGTAACCCTGGGCTGGCGGAGGTCATTGCTGAGCGCATCGGGGAGGAGTACATCGCAG ACCTGGACCAGCTGCGCAAACTGCTCTCCTACGTGGACGACGAAGCCTTTATCCGGGATG TGGCCAAAGTGAAGCAGGAAAACAAGTTAAAGTTCTCTGCGTATCTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGGTGGACACACAGGTGGTGTTGGCCATGCCCTACGACACACCCGTGCCTGGCTACC GCAACAACGTCGTCAATACCATGCGCCTGTGGTCTGCCAAGGCCCCCAATGACTTCAACC TCAAAGACTTCAACGTCGGTGGCTACATCCAGGCTGTGCTGGACCGCAACCTGGCTGAGA ACATTTCTCGGGTCCTGTACCCCAATGACAATTTCTTTGAAGGGAAGGAGCTACGGTTGA AGCAGGAGTACTTCGTGGTGGCGGCCACGCTCCAGGACATCATCCGCCGCTTCAAGTCCT CCAAGTTTGGCTGCCGTGACCCCGTGCGCACGAGCTTCGACGCCTTCCCGGATAAGGTGG CCATCCAGCTCAATGACACCCACCCTTCCTTGGCCATCCCTGAGCTGATGAGGATTCTGG TGGATGAGGAGCGGCTGGAGTGGGAGAAGGCATGGGACGTGACCGTGAGAACCTGTGCCT ACACCAACCACACGGTGCTGCCAGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGA CCCTGCTGCCCCGGCACCTCCAGATAATCTATGAGATCAACCAGCGCTTCCTTAATCGCG TGGCGGCCGCGTACCCTGGGGATGTAGACCGGCTGCGGCGCATGTCTCTGGTGGAGGAGG GCGCCGTGAAGCGCATCAACATGGCGCACCTGTGCATCGCCGGCTCGCACGCCGTCAACG GCGTGGCTCGCATCCACTCCGAGATCCTCAAGAAGACCATCTTCAAGGACTTCTACGAGC TGGAGCCTCATAAGTTCCAGAATAAGACCAACGGCATCACCCCTCGGCGCTGGCTAGTTA TGTGTAACCCTGGGCTGGCGGAGGTCATTGCTGAGCGCATCGGGGAGGAGTACATCGCAG ACCTGGACCAGCTGCGCAAACTGCTCTCCTACGTGGACGACGAAGCCTTTATCCGGGATG TGGCCAAAGTGAAGCAGGAAAACAAGTTAAAGTTCTCTGCGTATCTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 477-595, - strand, RNAz p=0.899044 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 477-595, - strand, RNAz p=0.899044 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 493-581, - strand, RNAmicro p=0.982873 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 2-123, gnl|bosTau2|chr29 (33904957-33904836) | |
| 2-123, gnl|canFam2|chr18 (55427032-55426924) | |
| 2-123, gnl|danRer3|chr7 (15228438-15228546) | |
| 2-123, gnl|dasNov1|scaffold_12601 (4418-4526) | |
| 2-123, gnl|echTel1|scaffold_238193 (210-102) | |
| 2-123, gnl|fr1|chrUn (106864470-106864578) | |
| 2-123, gnl|galGal2|chr5 (54651056-54651164) | |
| 2-123, gnl|hg17|chr11 (64279502-64279610) | |
| 2-123, gnl|Hg17|chr11 (64279621-64279501) | |
| 2-123, gnl|loxAfr1|scaffold_84598 (4199-4091) | |
| 2-123, gnl|mm7|chr19 (6282974-6282866) | |
| 2-123, gnl|Mm7|chr19 (6282850-6282973) | |
| 2-123, gnl|monDom2|scaffold_482 (39636-39528) | |
| 2-123, gnl|oryCun1|scaffold_122700 (1036-928) | |
| 2-123, gnl|panTro1|chr9 (65497321-65497429) | |
| 2-123, gnl|rheMac2|chr14 (9701348-9701240) | |
| 2-123, gnl|rn3|chr1 (209328939-209328831) | |
| 2-123, gnl|tetNig1|chr17 (7740535-7740643) | |
| 2-123, gnl|xenTro1|scaffold_145 (614636-614528) | |
| 213-358, gnl|bosTau2|chr29 (33904131-33903986) | |
| 213-358, gnl|canFam2|chr18 (55427901-55427752) | |
| 213-358, gnl|danRer3|chr7 (15227988-15228136) | |
| 213-358, gnl|dasNov1|scaffold_12601 (3683-3832) | |
| 213-358, gnl|echTel1|scaffold_238193 (6942-6793) | |
| 213-358, gnl|fr1|chrUn (106863757-106863905) | |
| 213-358, gnl|galGal2|chr5 (54650649-54650798) | |
| 213-358, gnl|hg17|chr11 (64278739-64278888) | |
| 213-358, gnl|Hg17|chr11 (64278884-64278739) | |
| 213-358, gnl|loxAfr1|scaffold_84598 (5109-4960) | |
| 213-358, gnl|mm7|chr19 (6283689-6283540) | |
| 213-358, gnl|Mm7|chr19 (6283542-6283687) | |
| 213-358, gnl|monDom2|scaffold_482 (40396-40247) | |
| 213-358, gnl|oryCun1|scaffold_122700 (1632-1483) | |
| 213-358, gnl|panTro1|chr9 (65496558-65496707) | |
| 213-358, gnl|rheMac2|chr14 (9702110-9701961) | |
| 213-358, gnl|rn3|chr1 (209329652-209329503) | |
| 213-358, gnl|tetNig1|chr17 (7740008-7740155) | |
| 213-358, gnl|xenTro1|scaffold_145 (618497-618348) | |
| 448-595, gnl|bosTau2|chr29 (33903333-33903186) | |
| 448-595, gnl|canFam2|chr18 (55428714-55428560) | |
| 448-595, gnl|danRer3|chr7 (15223921-15224081) | |
| 448-595, gnl|dasNov1|scaffold_12601 (2992-3146) | |
| 448-595, gnl|echTel1|scaffold_170654 (2858-3012) | |
| 448-595, gnl|fr1|chrUn (106862430-106862576) | |
| 448-595, gnl|galGal2|chr5 (54649828-54649979) | |
| 448-595, gnl|hg17|chr11 (64277926-64278080) | |
| 448-595, gnl|Hg17|chr11 (64278075-64277928) | |
| 448-595, gnl|loxAfr1|scaffold_84598 (5943-5789) | |
| 448-595, gnl|mm7|chr19 (6284410-6284256) | |
| 448-595, gnl|Mm7|chr19 (6284259-6284406) | |
| 448-595, gnl|monDom2|scaffold_482 (41293-41139) | |
| 448-595, gnl|oryCun1|scaffold_122700 (2364-2210) | |
| 448-595, gnl|panTro1|chr9 (65495745-65495899) | |
| 448-595, gnl|rheMac2|chr14 (9702923-9702769) | |
| 448-595, gnl|rn3|chr1 (209330346-209330192) | |
| 448-595, gnl|tetNig1|chrUn_random (23995788-23995627) | |
| 448-595, gnl|xenTro1|scaffold_145 (620210-620056) | |
| 597-760, gnl|bosTau2|chr29 (33903050-33902887) | |
| 597-760, gnl|Hg17|chr11 (64277730-64277567) | |
| 597-760, gnl|Mm7|chr19 (6284578-6284741) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-123, gnl|bosTau2|chr29 (33904957-33904836) | |
| 2-123, gnl|canFam2|chr18 (55427032-55426924) | |
| 2-123, gnl|danRer3|chr7 (15228438-15228546) | |
| 2-123, gnl|dasNov1|scaffold_12601 (4418-4526) | |
| 2-123, gnl|echTel1|scaffold_238193 (210-102) | |
| 2-123, gnl|fr1|chrUn (106864470-106864578) | |
| 2-123, gnl|galGal2|chr5 (54651056-54651164) | |
| 2-123, gnl|hg17|chr11 (64279502-64279610) | |
| 2-123, gnl|Hg17|chr11 (64279621-64279501) | |
| 2-123, gnl|loxAfr1|scaffold_84598 (4199-4091) | |
| 2-123, gnl|mm7|chr19 (6282974-6282866) | |
| 2-123, gnl|Mm7|chr19 (6282850-6282973) | |
| 2-123, gnl|monDom2|scaffold_482 (39636-39528) | |
| 2-123, gnl|oryCun1|scaffold_122700 (1036-928) | |
| 2-123, gnl|panTro1|chr9 (65497321-65497429) | |
| 2-123, gnl|rheMac2|chr14 (9701348-9701240) | |
| 2-123, gnl|rn3|chr1 (209328939-209328831) | |
| 2-123, gnl|tetNig1|chr17 (7740535-7740643) | |
| 2-123, gnl|xenTro1|scaffold_145 (614636-614528) | |
| 213-358, gnl|bosTau2|chr29 (33904131-33903986) | |
| 213-358, gnl|canFam2|chr18 (55427901-55427752) | |
| 213-358, gnl|danRer3|chr7 (15227988-15228136) | |
| 213-358, gnl|dasNov1|scaffold_12601 (3683-3832) | |
| 213-358, gnl|echTel1|scaffold_238193 (6942-6793) | |
| 213-358, gnl|fr1|chrUn (106863757-106863905) | |
| 213-358, gnl|galGal2|chr5 (54650649-54650798) | |
| 213-358, gnl|hg17|chr11 (64278739-64278888) | |
| 213-358, gnl|Hg17|chr11 (64278884-64278739) | |
| 213-358, gnl|loxAfr1|scaffold_84598 (5109-4960) | |
| 213-358, gnl|mm7|chr19 (6283689-6283540) | |
| 213-358, gnl|Mm7|chr19 (6283542-6283687) | |
| 213-358, gnl|monDom2|scaffold_482 (40396-40247) | |
| 213-358, gnl|oryCun1|scaffold_122700 (1632-1483) | |
| 213-358, gnl|panTro1|chr9 (65496558-65496707) | |
| 213-358, gnl|rheMac2|chr14 (9702110-9701961) | |
| 213-358, gnl|rn3|chr1 (209329652-209329503) | |
| 213-358, gnl|tetNig1|chr17 (7740008-7740155) | |
| 213-358, gnl|xenTro1|scaffold_145 (618497-618348) | |
| 448-595, gnl|bosTau2|chr29 (33903333-33903186) | |
| 448-595, gnl|canFam2|chr18 (55428714-55428560) | |
| 448-595, gnl|danRer3|chr7 (15223921-15224081) | |
| 448-595, gnl|dasNov1|scaffold_12601 (2992-3146) | |
| 448-595, gnl|echTel1|scaffold_170654 (2858-3012) | |
| 448-595, gnl|fr1|chrUn (106862430-106862576) | |
| 448-595, gnl|galGal2|chr5 (54649828-54649979) | |
| 448-595, gnl|hg17|chr11 (64277926-64278080) | |
| 448-595, gnl|Hg17|chr11 (64278075-64277928) | |
| 448-595, gnl|loxAfr1|scaffold_84598 (5943-5789) | |
| 448-595, gnl|mm7|chr19 (6284410-6284256) | |
| 448-595, gnl|Mm7|chr19 (6284259-6284406) | |
| 448-595, gnl|monDom2|scaffold_482 (41293-41139) | |
| 448-595, gnl|oryCun1|scaffold_122700 (2364-2210) | |
| 448-595, gnl|panTro1|chr9 (65495745-65495899) | |
| 448-595, gnl|rheMac2|chr14 (9702923-9702769) | |
| 448-595, gnl|rn3|chr1 (209330346-209330192) | |
| 448-595, gnl|tetNig1|chrUn_random (23995788-23995627) | |
| 448-595, gnl|xenTro1|scaffold_145 (620210-620056) | |
| 597-760, gnl|bosTau2|chr29 (33903050-33902887) | |
| 597-760, gnl|Hg17|chr11 (64277730-64277567) | |
| 597-760, gnl|Mm7|chr19 (6284578-6284741) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mas (0.210305) | |
| nep (0.183925) | |
| nca (0.136874) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| nep (0.183925) | |
| nca (0.136874) | |
| jca (0.11396) |