Ss1.1-Utr1-UTR010075A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCCTGCGGCGAACATGGCGGCCCTCAGCGGCGTCCGCTGGCTGACCCGAGCGCTGGT CGCCGCCCCGAATCCCGGAGCATGGAGGAGCCTGAGTACCTCGGTCGTGGCGCAAGCCGC CTCCCGGAGCCAGGCCGAGGACGTGAGAGTGGAAGGCGCCTTTCCCGTGACTATGTTGCC AGGAGACGGCGTGGGGCCTGAGCTGATGCACGCTGTCAAGGAGGTTTTCAAGGCGGCCTC TGTCCCGGTGGAGTTCCAGGAACATCACCTGAGCGAGGTGCAGAATATGGCATCCGAGGA GAAGCTGGAGCAGGTGCTGAGTTCGATGAAGGAGAACAAAGTGGCCATAATTGGAAAGAT CCACACTCCGATGGAGTATAAGGGGGAACTAGCCTCCTACGATATGCGGCTGAGGCGTAA GTTGGACTTGTTTGCCAATGTCGTCCATGTGAAGTCTCTTCCTGGGTACATGACTCGACA CAACAATCTAGATTTGGTGATCATTCGAGAGCAGACAGAAGGGGAGTACAGCTCTCTGGA ACACGAGAGTGCGAGGGGCGTGATCGAGTGCTTGAAGATTGTCACTCGAACCAAATCTCA GCGGATTGCAAAGTTCGCCTTTGACTATGCCACTAAGAAGGGGCGGAGCAAGGTCACAGC TGTCCACAAGGCCAATATAATGAAACTGGGGGATGGGTTGTTCCTGCAGTGCTGCGAGGA AGTTGCTGAACTGTACCCCAAGATCAAGTTTGAGACAATGATCATAGACAACTGCTGCAT GCAGCTGGTGCAGAATCCTTACCAATTTGATGTGCTGGTGATGCCCAATCTCTACGGGAA CATTATTGACAATCTGGCTGCCGGCCTGGTCGGGGGAGCTGGTGTGGTTCCTGGTGAGAG CTACAGCGCCGAGTATGCAGTGTTTGAGATGGGCGCCCGGCATCCATTTGCCCAGGCAGT GGGCAGAAATATAGCCAACCCCACAGCCATGCTGCTGTCAGCTTCCAACATGCTACGGCA TCTCAATCTCGAGTATCACTCCAACATGATTGCAGATGCTGTGAAGAAGGTGATCAAAGT GGGCAAGGTGCGGACTCGAGACATGGGCGGCTACAGTACCACAACCGACTTCATCAAGTC TGTCATCGGCCACCTGCACCCCCATGGGGGCTAGAGCCCTTTATTCCCTCCAACCTCACA AGGACCATACACATCCCTTCAGTGCAGTGGACCAGAGAAGAGCGCTCAGCCTCTAGACCA TAATCACCTTCTGGGCAGAGCTTAGGTTGTCTGGGGCTGGCTTCCTTAGGGAACTATTAG GTGGTGGGGGGCTAGGGGTAGGGCCCAGACCACAGGGATGATGACGATTCTCCCCCACAG GTTCGAACTTCTGACATGGGTGGCTATGCCACCTGCCAGGACTTCACTGAGGCTGTCATT GGTGCTCTGTCCCACCCATAGGTCCCACCCACACCCATGTAAGGTGTCCATCAAATAAAA ACATGGTATGTGAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCCTGCGGCGAACATGGCGGCCCTCAGCGGCGTCCGCTGGCTGACCCGAGCGCTGGT CGCCGCCCCGAATCCCGGAGCATGGAGGAGCCTGAGTACCTCGGTCGTGGCGCAAGCCGC CTCCCGGAGCCAGGCCGAGGACGTGAGAGTGGAAGGCGCCTTTCCCGTGACTATGTTGCC AGGAGACGGCGTGGGGCCTGAGCTGATGCACGCTGTCAAGGAGGTTTTCAAGGCGGCCTC TGTCCCGGTGGAGTTCCAGGAACATCACCTGAGCGAGGTGCAGAATATGGCATCCGAGGA GAAGCTGGAGCAGGTGCTGAGTTCGATGAAGGAGAACAAAGTGGCCATAATTGGAAAGAT CCACACTCCGATGGAGTATAAGGGGGAACTAGCCTCCTACGATATGCGGCTGAGGCGTAA GTTGGACTTGTTTGCCAATGTCGTCCATGTGAAGTCTCTTCCTGGGTACATGACTCGACA CAACAATCTAGATTTGGTGATCATTCGAGAGCAGACAGAAGGGGAGTACAGCTCTCTGGA ACACGAGAGTGCGAGGGGCGTGATCGAGTGCTTGAAGATTGTCACTCGAACCAAATCTCA GCGGATTGCAAAGTTCGCCTTTGACTATGCCACTAAGAAGGGGCGGAGCAAGGTCACAGC TGTCCACAAGGCCAATATAATGAAACTGGGGGATGGGTTGTTCCTGCAGTGCTGCGAGGA AGTTGCTGAACTGTACCCCAAGATCAAGTTTGAGACAATGATCATAGACAACTGCTGCAT GCAGCTGGTGCAGAATCCTTACCAATTTGATGTGCTGGTGATGCCCAATCTCTACGGGAA CATTATTGACAATCTGGCTGCCGGCCTGGTCGGGGGAGCTGGTGTGGTTCCTGGTGAGAG CTACAGCGCCGAGTATGCAGTGTTTGAGATGGGCGCCCGGCATCCATTTGCCCAGGCAGT GGGCAGAAATATAGCCAACCCCACAGCCATGCTGCTGTCAGCTTCCAACATGCTACGGCA TCTCAATCTCGAGTATCACTCCAACATGATTGCAGATGCTGTGAAGAAGGTGATCAAAGT GGGCAAGGTGCGGACTCGAGACATGGGCGGCTACAGTACCACAACCGACTTCATCAAGTC TGTCATCGGCCACCTGCACCCCCATGGGGGCTAGAGCCCTTTATTCCCTCCAACCTCACA AGGACCATACACATCCCTTCAGTGCAGTGGACCAGAGAAGAGCGCTCAGCCTCTAGACCA TAATCACCTTCTGGGCAGAGCTTAGGTTGTCTGGGGCTGGCTTCCTTAGGGAACTATTAG GTGGTGGGGGGCTAGGGGTAGGGCCCAGACCACAGGGATGATGACGATTCTCCCCCACAG GTTCGAACTTCTGACATGGGTGGCTATGCCACCTGCCAGGACTTCACTGAGGCTGTCATT GGTGCTCTGTCCCACCCATAGGTCCCACCCACACCCATGTAAGGTGTCCATCAAATAAAA ACATGGTATGTGAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 5-134, gnl|bosTau2|chr13 (34318904-34318776) | |
| 5-134, gnl|Hg17|chr20 (2592700-2592570) | |
| 5-134, gnl|Mm7|chr2 (130025138-130025023) | |
| 227-354, gnl|bosTau2|chr13 (34318465-34318338) | |
| 227-354, gnl|canFam2|chr24 (21554229-21554094) | |
| 227-354, gnl|danRer3|chr21 (6051330-6051464) | |
| 227-354, gnl|dasNov1|scaffold_50914 (11663-11798) | |
| 227-354, gnl|fr1|chrUn (289827570-289827703) | |
| 227-354, gnl|galGal2|chrUn (159895938-159895799) | |
| 227-354, gnl|hg17|chr20 (2592073-2592208) | |
| 227-354, gnl|Hg17|chr20 (2592218-2592091) | |
| 227-354, gnl|mm7|chr2 (130024547-130024678) | |
| 227-354, gnl|Mm7|chr2 (130024688-130024561) | |
| 227-354, gnl|monDom2|scaffold_10 (48389677-48389806) | |
| 227-354, gnl|oryCun1|scaffold_177582 (33213-33083) | |
| 227-354, gnl|panTro1|chr21 (2584972-2585107) | |
| 227-354, gnl|rheMac2|chr10 (35974286-35974421) | |
| 227-354, gnl|rn3|chr3 (117802464-117802595) | |
| 227-354, gnl|tetNig1|chr11 (908134-908267) | |
| 227-354, gnl|xenTro1|scaffold_592 (257455-257579) | |
| 424-1030, gnl|bosTau2|chr29 (16725677-16725074) | |
| 424-1030, gnl|Hg17|chr11 (21262325-21262929) | |
| 424-1030, gnl|Mm7|chr7 (46820281-46820887) | |
| 546-682, gnl|bosTau2|chr13 (34316184-34316048) | |
| 546-682, gnl|canFam2|chr24 (21556359-21556235) | |
| 546-682, gnl|danRer3|chr21 (6047192-6047312) | |
| 546-682, gnl|dasNov1|scaffold_71435 (1742-1635) | |
| 546-682, gnl|echTel1|scaffold_298064 (674-536) | |
| 546-682, gnl|fr1|chrUn (289827001-289827125) | |
| 546-682, gnl|galGal2|chrUn (159896710-159896585) | |
| 546-682, gnl|hg17|chr20 (2589091-2589215) | |
| 546-682, gnl|Hg17|chr20 (2589238-2589102) | |
| 546-682, gnl|loxAfr1|scaffold_47558 (2085-1961) | |
| 546-682, gnl|mm7|chr2 (130022238-130022372) | |
| 546-682, gnl|Mm7|chr2 (130022395-130022259) | |
| 546-682, gnl|monDom2|scaffold_10 (48388711-48388835) | |
| 546-682, gnl|oryCun1|scaffold_179710 (19240-19422) | |
| 546-682, gnl|panTro1|chr21 (2581976-2582100) | |
| 546-682, gnl|rheMac2|chr10 (35971099-35971223) | |
| 546-682, gnl|rn3|chr3 (117800199-117800334) | |
| 546-682, gnl|tetNig1|chr11 (907560-907685) | |
| 546-682, gnl|xenTro1|scaffold_592 (256375-256512) | |
| 782-932, gnl|bosTau2|chr13 (34315776-34315626) | |
| 782-932, gnl|canFam2|chr24 (21556805-21556665) | |
| 782-932, gnl|danRer3|chr21 (6046762-6046902) | |
| 782-932, gnl|dasNov1|scaffold_50914 (9099-9223) | |
| 782-932, gnl|echTel1|scaffold_298064 (1106-966) | |
| 782-932, gnl|fr1|chrUn (289826577-289826707) | |
| 782-932, gnl|galGal2|chrUn (159897864-159897740) | |
| 782-932, gnl|hg17|chr20 (2588659-2588795) | |
| 782-932, gnl|Hg17|chr20 (2588825-2588675) | |
| 782-932, gnl|loxAfr1|scaffold_47558 (2737-2597) | |
| 782-932, gnl|mm7|chr2 (130021789-130021928) | |
| 782-932, gnl|Mm7|chr2 (130021958-130021808) | |
| 782-932, gnl|monDom2|scaffold_10 (48388224-48388347) | |
| 782-932, gnl|oryCun1|scaffold_179710 (18661-18809) | |
| 782-932, gnl|panTro1|chr21 (2581540-2581680) | |
| 782-932, gnl|rheMac2|chr10 (35970661-35970801) | |
| 782-932, gnl|rn3|chr3 (117799684-117799823) | |
| 782-932, gnl|tetNig1|chr11 (907128-907251) | |
| 782-932, gnl|xenTro1|scaffold_592 (255182-255309) | |
| 1086-1510, gnl|bosTau2|chr13 (34314527-34314107) | |
| 1086-1510, gnl|Hg17|chr20 (2587485-2587042) | |
| 1086-1510, gnl|Mm7|chr2 (130020581-130020160) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-134, gnl|bosTau2|chr13 (34318904-34318776) | |
| 5-134, gnl|Hg17|chr20 (2592700-2592570) | |
| 5-134, gnl|Mm7|chr2 (130025138-130025023) | |
| 227-354, gnl|bosTau2|chr13 (34318465-34318338) | |
| 227-354, gnl|canFam2|chr24 (21554229-21554094) | |
| 227-354, gnl|danRer3|chr21 (6051330-6051464) | |
| 227-354, gnl|dasNov1|scaffold_50914 (11663-11798) | |
| 227-354, gnl|fr1|chrUn (289827570-289827703) | |
| 227-354, gnl|galGal2|chrUn (159895938-159895799) | |
| 227-354, gnl|hg17|chr20 (2592073-2592208) | |
| 227-354, gnl|Hg17|chr20 (2592218-2592091) | |
| 227-354, gnl|mm7|chr2 (130024547-130024678) | |
| 227-354, gnl|Mm7|chr2 (130024688-130024561) | |
| 227-354, gnl|monDom2|scaffold_10 (48389677-48389806) | |
| 227-354, gnl|oryCun1|scaffold_177582 (33213-33083) | |
| 227-354, gnl|panTro1|chr21 (2584972-2585107) | |
| 227-354, gnl|rheMac2|chr10 (35974286-35974421) | |
| 227-354, gnl|rn3|chr3 (117802464-117802595) | |
| 227-354, gnl|tetNig1|chr11 (908134-908267) | |
| 227-354, gnl|xenTro1|scaffold_592 (257455-257579) | |
| 424-1030, gnl|bosTau2|chr29 (16725677-16725074) | |
| 424-1030, gnl|Hg17|chr11 (21262325-21262929) | |
| 424-1030, gnl|Mm7|chr7 (46820281-46820887) | |
| 546-682, gnl|bosTau2|chr13 (34316184-34316048) | |
| 546-682, gnl|canFam2|chr24 (21556359-21556235) | |
| 546-682, gnl|danRer3|chr21 (6047192-6047312) | |
| 546-682, gnl|dasNov1|scaffold_71435 (1742-1635) | |
| 546-682, gnl|echTel1|scaffold_298064 (674-536) | |
| 546-682, gnl|fr1|chrUn (289827001-289827125) | |
| 546-682, gnl|galGal2|chrUn (159896710-159896585) | |
| 546-682, gnl|hg17|chr20 (2589091-2589215) | |
| 546-682, gnl|Hg17|chr20 (2589238-2589102) | |
| 546-682, gnl|loxAfr1|scaffold_47558 (2085-1961) | |
| 546-682, gnl|mm7|chr2 (130022238-130022372) | |
| 546-682, gnl|Mm7|chr2 (130022395-130022259) | |
| 546-682, gnl|monDom2|scaffold_10 (48388711-48388835) | |
| 546-682, gnl|oryCun1|scaffold_179710 (19240-19422) | |
| 546-682, gnl|panTro1|chr21 (2581976-2582100) | |
| 546-682, gnl|rheMac2|chr10 (35971099-35971223) | |
| 546-682, gnl|rn3|chr3 (117800199-117800334) | |
| 546-682, gnl|tetNig1|chr11 (907560-907685) | |
| 546-682, gnl|xenTro1|scaffold_592 (256375-256512) | |
| 782-932, gnl|bosTau2|chr13 (34315776-34315626) | |
| 782-932, gnl|canFam2|chr24 (21556805-21556665) | |
| 782-932, gnl|danRer3|chr21 (6046762-6046902) | |
| 782-932, gnl|dasNov1|scaffold_50914 (9099-9223) | |
| 782-932, gnl|echTel1|scaffold_298064 (1106-966) | |
| 782-932, gnl|fr1|chrUn (289826577-289826707) | |
| 782-932, gnl|galGal2|chrUn (159897864-159897740) | |
| 782-932, gnl|hg17|chr20 (2588659-2588795) | |
| 782-932, gnl|Hg17|chr20 (2588825-2588675) | |
| 782-932, gnl|loxAfr1|scaffold_47558 (2737-2597) | |
| 782-932, gnl|mm7|chr2 (130021789-130021928) | |
| 782-932, gnl|Mm7|chr2 (130021958-130021808) | |
| 782-932, gnl|monDom2|scaffold_10 (48388224-48388347) | |
| 782-932, gnl|oryCun1|scaffold_179710 (18661-18809) | |
| 782-932, gnl|panTro1|chr21 (2581540-2581680) | |
| 782-932, gnl|rheMac2|chr10 (35970661-35970801) | |
| 782-932, gnl|rn3|chr3 (117799684-117799823) | |
| 782-932, gnl|tetNig1|chr11 (907128-907251) | |
| 782-932, gnl|xenTro1|scaffold_592 (255182-255309) | |
| 1086-1510, gnl|bosTau2|chr13 (34314527-34314107) | |
| 1086-1510, gnl|Hg17|chr20 (2587485-2587042) | |
| 1086-1510, gnl|Mm7|chr2 (130020581-130020160) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| mas (0.630915) | |
| hlv (0.557025) | |
| nep (0.551775) | |
| ese (0.379507) | |
| nje (0.33184) | |
| nbm (0.297974) | |
| che (0.272628) | |
| cly (0.241284) | |
| ece (0.229305) | |
| jca (0.22792) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.630915) | |
| hlv (0.557025) | |
| nep (0.551775) | |
| ese (0.379507) | |
| nje (0.33184) | |
| nbm (0.297974) | |
| che (0.272628) | |
| cly (0.241284) | |
| ece (0.229305) | |
| jca (0.22792) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |