Ss1.1-Utr1-UTR010075B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGGCGGCTGCGCGCCGGGCGCGGGCAGTGCTCGCTCCTGCTGGGGCGCTGCGGTGGCG CCCTCGTCCAGGCGTCGCTATGACCAGCGAGCTGGACATCTTCGTGGGGAACACGACCCT CATCGACGAGGACGTGTATCGCCTCTGGCTGGACGGTTATTCGGTGAACGACGCGGTGGC CCTGCGGGTGCGCTCGGGAATCCTGGAGCAGACCGGCGCCACCGCGGCGGTGCTGCAGAG CGACACCATGGACCACTACCGCACTTTCCACATGCTCGAACGCCTGCTGCACGCACCGCC CAAGCTGCTGCACCAGCTCATCTTCCAGATCCCACCCTCTCGACAGGCACTGCTCATCGA GAGGTACTATGCCTTTGACGAGGCCTTTGTGCGGGAGGTGCTGGGCAAGAAGCTGTCCAA AGGCACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGCATCACCCTCAAGAGCTG CCGGAGACAGTTTGACAACTTCAAGCGAGTCTTCAAGGTGGTGGAGGAAATGCGGGGCTC CCTGGTGGATAACATCCAGCAACACTTCCTCCTGTCCGACCGGCTGGCCAGGGACTATGC AGCCATCGTCTTCTTTGCCAACAATCGCTTTGAGACAGGAAAGAAAAAACTGCAGTATCT GAGCTTCGGGGACTTTGCCTTCTGTGCTGAGCTCATGATCCAGAACTGGACCCTCGGAGC CGTTGACTCCCAGGTGGATGACATGGACATGGACTTAGACAAGGAGTTTCTCCAGGACTT GAAGGAGCTCAAGGTGCTTGTGGCTGACAAGGACCTTCTGGACCTGCACAAGAGCCTGGT GTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAGCCAACTTCAAGAA CCTGTCCCGGGGGCTGGTGAATGTGGCCGCCAAGCTGACCCACAATAAGGATGTCCGAGA CCTGTTTGTGGACCTCGTTGAAAAGTTTGTGGAGCCCTGCCGCTCCGACCACTGGCCGCT GAAAGACGTGCAGCTCTTCTTGAATCAGTATTCGGCGTCGGTCCACTCCTTGGACGGCTT CCGGCACCAGGCCCTCTGGGACCGCTACATGGGCACCCTCCATGGCTGCCTCCTGCGTCT CTATCATGACTGAGACCGCCTCCCACCGCCCTCCCTCACTGACAATAAAGTGGCCATGAC TTTGAAAAAAAAAAAAAAAAAAAAACCTTTTAGAAGCTGTGACCTGACCTTGGACAGGAT CTTGACCCGCTTTGTGCCTGTTTCTTCCCACACGAGCTGGGGACAGTGACGATAAGGATC ACAAGATGAACGCGTCCTGGCGAGCTGGGGCTGCAGTAAACCTCAGCCAATACTGTCGCC ACTGTCATTGCAGGCACCAGGCCCTCTGGGACCGCTACATGGGCACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGGCGGCTGCGCGCCGGGCGCGGGCAGTGCTCGCTCCTGCTGGGGCGCTGCGGTGGCG CCCTCGTCCAGGCGTCGCTATGACCAGCGAGCTGGACATCTTCGTGGGGAACACGACCCT CATCGACGAGGACGTGTATCGCCTCTGGCTGGACGGTTATTCGGTGAACGACGCGGTGGC CCTGCGGGTGCGCTCGGGAATCCTGGAGCAGACCGGCGCCACCGCGGCGGTGCTGCAGAG CGACACCATGGACCACTACCGCACTTTCCACATGCTCGAACGCCTGCTGCACGCACCGCC CAAGCTGCTGCACCAGCTCATCTTCCAGATCCCACCCTCTCGACAGGCACTGCTCATCGA GAGGTACTATGCCTTTGACGAGGCCTTTGTGCGGGAGGTGCTGGGCAAGAAGCTGTCCAA AGGCACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGCATCACCCTCAAGAGCTG CCGGAGACAGTTTGACAACTTCAAGCGAGTCTTCAAGGTGGTGGAGGAAATGCGGGGCTC CCTGGTGGATAACATCCAGCAACACTTCCTCCTGTCCGACCGGCTGGCCAGGGACTATGC AGCCATCGTCTTCTTTGCCAACAATCGCTTTGAGACAGGAAAGAAAAAACTGCAGTATCT GAGCTTCGGGGACTTTGCCTTCTGTGCTGAGCTCATGATCCAGAACTGGACCCTCGGAGC CGTTGACTCCCAGGTGGATGACATGGACATGGACTTAGACAAGGAGTTTCTCCAGGACTT GAAGGAGCTCAAGGTGCTTGTGGCTGACAAGGACCTTCTGGACCTGCACAAGAGCCTGGT GTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAGCCAACTTCAAGAA CCTGTCCCGGGGGCTGGTGAATGTGGCCGCCAAGCTGACCCACAATAAGGATGTCCGAGA CCTGTTTGTGGACCTCGTTGAAAAGTTTGTGGAGCCCTGCCGCTCCGACCACTGGCCGCT GAAAGACGTGCAGCTCTTCTTGAATCAGTATTCGGCGTCGGTCCACTCCTTGGACGGCTT CCGGCACCAGGCCCTCTGGGACCGCTACATGGGCACCCTCCATGGCTGCCTCCTGCGTCT CTATCATGACTGAGACCGCCTCCCACCGCCCTCCCTCACTGACAATAAAGTGGCCATGAC TTTGAAAAAAAAAAAAAAAAAAAAACCTTTTAGAAGCTGTGACCTGACCTTGGACAGGAT CTTGACCCGCTTTGTGCCTGTTTCTTCCCACACGAGCTGGGGACAGTGACGATAAGGATC ACAAGATGAACGCGTCCTGGCGAGCTGGGGCTGCAGTAAACCTCAGCCAATACTGTCGCC ACTGTCATTGCAGGCACCAGGCCCTCTGGGACCGCTACATGGGCACCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-164, gnl|bosTau2|chr29 (30502691-30502528) | |
| 1-164, gnl|Hg17|chr11 (65412535-65412381) | |
| 1-164, gnl|Mm7|chr19 (5355429-5355584) | |
| 362-497, gnl|bosTau2|chr29 (30502048-30501913) | |
| 362-497, gnl|Hg17|chr11 (65411775-65411640) | |
| 362-497, gnl|Mm7|chr19 (5356194-5356329) | |
| 589-723, gnl|bosTau2|chr29 (30500406-30500272) | |
| 589-723, gnl|canFam2|chr18 (54405765-54405605) | |
| 589-723, gnl|danRer3|chrUn (51581682-51581539) | |
| 589-723, gnl|dasNov1|scaffold_194372 (549-388) | |
| 589-723, gnl|echTel1|scaffold_293968 (6839-6679) | |
| 589-723, gnl|fr1|chrUn (186377018-186376859) | |
| 589-723, gnl|hg17|chr11 (65409571-65409731) | |
| 589-723, gnl|Hg17|chr11 (65409713-65409579) | |
| 589-723, gnl|loxAfr1|scaffold_11359 (8783-8943) | |
| 589-723, gnl|mm7|chr19 (5358118-5357959) | |
| 589-723, gnl|Mm7|chr19 (5357974-5358108) | |
| 589-723, gnl|monDom2|scaffold_107 (2979469-2979316) | |
| 589-723, gnl|panTro1|chr9 (66656005-66656165) | |
| 589-723, gnl|rheMac2|chr14 (8568885-8568739) | |
| 589-723, gnl|rn3|chr1 (208260240-208260081) | |
| 589-723, gnl|tetNig1|chr1 (8235297-8235144) | |
| 589-723, gnl|xenTro1|scaffold_521 (682848-683015) | |
| 725-834, gnl|bosTau2|chr29 (30499982-30499873) | |
| 725-834, gnl|canFam2|chr18 (54406213-54406100) | |
| 725-834, gnl|danRer3|chrUn (51583672-51583561) | |
| 725-834, gnl|dasNov1|scaffold_194372 (1031-918) | |
| 725-834, gnl|echTel1|scaffold_293968 (7117-7013) | |
| 725-834, gnl|fr1|chrUn (186377541-186377408) | |
| 725-834, gnl|hg17|chr11 (65409114-65409227) | |
| 725-834, gnl|Hg17|chr11 (65409234-65409125) | |
| 725-834, gnl|loxAfr1|scaffold_11359 (8348-8461) | |
| 725-834, gnl|mm7|chr19 (5358529-5358418) | |
| 725-834, gnl|Mm7|chr19 (5358409-5358518) | |
| 725-834, gnl|monDom2|scaffold_107 (2980156-2980047) | |
| 725-834, gnl|panTro1|chr9 (66655548-66655661) | |
| 725-834, gnl|rheMac2|chr14 (8569340-8569227) | |
| 725-834, gnl|rn3|chr1 (208260666-208260555) | |
| 725-834, gnl|tetNig1|chr1 (8235764-8235635) | |
| 725-834, gnl|xenTro1|scaffold_521 (681941-682052) | |
| 1083-1204, gnl|bosTau2|chr29 (30498894-30498774) | |
| 1083-1204, gnl|canFam2|chr18 (54407335-54407219) | |
| 1083-1204, gnl|dasNov1|scaffold_29135 (5086-5223) | |
| 1083-1204, gnl|echTel1|scaffold_293968 (8305-8181) | |
| 1083-1204, gnl|hg17|chr10 (97508406-97508539) | |
| 1083-1204, gnl|Hg17|chr11 (65408091-65407970) | |
| 1083-1204, gnl|loxAfr1|scaffold_11359 (7208-7331) | |
| 1083-1204, gnl|mm7|chr19 (40555601-40555734) | |
| 1083-1204, gnl|Mm7|chr19 (5359730-5359856) | |
| 1083-1204, gnl|oryCun1|scaffold_199078 (7005-6872) | |
| 1083-1204, gnl|panTro1|chr8 (99193698-99193831) | |
| 1083-1204, gnl|rheMac2|chr9 (95291843-95291975) | |
| 1083-1204, gnl|rn3|chr1 (245896633-245896764) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-164, gnl|bosTau2|chr29 (30502691-30502528) | |
| 1-164, gnl|Hg17|chr11 (65412535-65412381) | |
| 1-164, gnl|Mm7|chr19 (5355429-5355584) | |
| 362-497, gnl|bosTau2|chr29 (30502048-30501913) | |
| 362-497, gnl|Hg17|chr11 (65411775-65411640) | |
| 362-497, gnl|Mm7|chr19 (5356194-5356329) | |
| 589-723, gnl|bosTau2|chr29 (30500406-30500272) | |
| 589-723, gnl|canFam2|chr18 (54405765-54405605) | |
| 589-723, gnl|danRer3|chrUn (51581682-51581539) | |
| 589-723, gnl|dasNov1|scaffold_194372 (549-388) | |
| 589-723, gnl|echTel1|scaffold_293968 (6839-6679) | |
| 589-723, gnl|fr1|chrUn (186377018-186376859) | |
| 589-723, gnl|hg17|chr11 (65409571-65409731) | |
| 589-723, gnl|Hg17|chr11 (65409713-65409579) | |
| 589-723, gnl|loxAfr1|scaffold_11359 (8783-8943) | |
| 589-723, gnl|mm7|chr19 (5358118-5357959) | |
| 589-723, gnl|Mm7|chr19 (5357974-5358108) | |
| 589-723, gnl|monDom2|scaffold_107 (2979469-2979316) | |
| 589-723, gnl|panTro1|chr9 (66656005-66656165) | |
| 589-723, gnl|rheMac2|chr14 (8568885-8568739) | |
| 589-723, gnl|rn3|chr1 (208260240-208260081) | |
| 589-723, gnl|tetNig1|chr1 (8235297-8235144) | |
| 589-723, gnl|xenTro1|scaffold_521 (682848-683015) | |
| 725-834, gnl|bosTau2|chr29 (30499982-30499873) | |
| 725-834, gnl|canFam2|chr18 (54406213-54406100) | |
| 725-834, gnl|danRer3|chrUn (51583672-51583561) | |
| 725-834, gnl|dasNov1|scaffold_194372 (1031-918) | |
| 725-834, gnl|echTel1|scaffold_293968 (7117-7013) | |
| 725-834, gnl|fr1|chrUn (186377541-186377408) | |
| 725-834, gnl|hg17|chr11 (65409114-65409227) | |
| 725-834, gnl|Hg17|chr11 (65409234-65409125) | |
| 725-834, gnl|loxAfr1|scaffold_11359 (8348-8461) | |
| 725-834, gnl|mm7|chr19 (5358529-5358418) | |
| 725-834, gnl|Mm7|chr19 (5358409-5358518) | |
| 725-834, gnl|monDom2|scaffold_107 (2980156-2980047) | |
| 725-834, gnl|panTro1|chr9 (66655548-66655661) | |
| 725-834, gnl|rheMac2|chr14 (8569340-8569227) | |
| 725-834, gnl|rn3|chr1 (208260666-208260555) | |
| 725-834, gnl|tetNig1|chr1 (8235764-8235635) | |
| 725-834, gnl|xenTro1|scaffold_521 (681941-682052) | |
| 1083-1204, gnl|bosTau2|chr29 (30498894-30498774) | |
| 1083-1204, gnl|canFam2|chr18 (54407335-54407219) | |
| 1083-1204, gnl|dasNov1|scaffold_29135 (5086-5223) | |
| 1083-1204, gnl|echTel1|scaffold_293968 (8305-8181) | |
| 1083-1204, gnl|hg17|chr10 (97508406-97508539) | |
| 1083-1204, gnl|Hg17|chr11 (65408091-65407970) | |
| 1083-1204, gnl|loxAfr1|scaffold_11359 (7208-7331) | |
| 1083-1204, gnl|mm7|chr19 (40555601-40555734) | |
| 1083-1204, gnl|Mm7|chr19 (5359730-5359856) | |
| 1083-1204, gnl|oryCun1|scaffold_199078 (7005-6872) | |
| 1083-1204, gnl|panTro1|chr8 (99193698-99193831) | |
| 1083-1204, gnl|rheMac2|chr9 (95291843-95291975) | |
| 1083-1204, gnl|rn3|chr1 (245896633-245896764) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| eep (0.490256) | |
| ebs (0.473205) | |
| med (0.465008) | |
| eye (0.341006) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| ece (0.229305) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.490256) | |
| ebs (0.473205) | |
| med (0.465008) | |
| eye (0.341006) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| ece (0.229305) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| ecc (0.115035) |