Ss1.1-Utr1-UTR010075F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACACTGCTCAAGGTGGAGGACTGGCCATACGCGAAGCTTACCTTTGACCTCTCCCCGG CTGCCTCCGGCCTTGATTTGTGATCCTAGGCACTTTGGGGCTCTTCTGACCATCTAGCCA GACCCCAGCCTGAAACCATGTTCCCGGTGAAAGTGAAGGTGGAGAAATCAGAGCTGGAGA TGGCCAAGGCCCGGAACCAGCTGGATGCTGTTCTGCAGTGTCTTCTGGAGAAGAGTCACA TGGACAGGGAGCGTCTGGATGAGGAGGCCAGGAAGACCCCTTCAGACGCCCACAACAAGG ACTGCTCCATCGCGGCCACTGGCAAACGGCCATCCGCCCGATTCCCCCACCAGAGGAGGA AGAAGAGGAGGGAGATGGATGATGGGCTAGCCGAGGGTGGGCCACAGCGATCCAATGCAT ACGTGATCAAGCTGTTTGATCGGAGCGTGGACTTGGCTCAGTTCAGTGAGAACACACCTC TGTACCCGATCTGCCGAGCCTGGATGCGCAACAGCCCCTCCGTGCGCGAGCGGGAACGCT CCCCCAGCTCACCGCTGCCCCCGCTGCCTGAGGATGAGGAGGGTTCAGAGGTCACCAACA GCAAGAGTCGAGACGTGTATAAGCTGCCTCCACCCACAGCTCCTGGGCCACCTGGAGACA CCTGCAGATCCCGAATTCCATCCCCGCTCCAGCCTGAGACCCAGGGTGCCCCTGATGACG AGCCCTCCGAGCCTGAGCCCTCACCCTCCACTCTCATCTACCGAAACATGCAGCGCTGGA AACGCATCCGCCAGAGGTGGAAGGAGGCATCCCATCGGAACCAGCTTCGTTACTCGGAAA GCATGAAGATCCTACGGGAGATGTACGAGCGACAGTGATGTTCCCTTGTCCCCCCACCTC AATAAACATTCCCCTGCCCCAAAAAAAAAAAAAAAATTGGACAGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACACTGCTCAAGGTGGAGGACTGGCCATACGCGAAGCTTACCTTTGACCTCTCCCCGG CTGCCTCCGGCCTTGATTTGTGATCCTAGGCACTTTGGGGCTCTTCTGACCATCTAGCCA GACCCCAGCCTGAAACCATGTTCCCGGTGAAAGTGAAGGTGGAGAAATCAGAGCTGGAGA TGGCCAAGGCCCGGAACCAGCTGGATGCTGTTCTGCAGTGTCTTCTGGAGAAGAGTCACA TGGACAGGGAGCGTCTGGATGAGGAGGCCAGGAAGACCCCTTCAGACGCCCACAACAAGG ACTGCTCCATCGCGGCCACTGGCAAACGGCCATCCGCCCGATTCCCCCACCAGAGGAGGA AGAAGAGGAGGGAGATGGATGATGGGCTAGCCGAGGGTGGGCCACAGCGATCCAATGCAT ACGTGATCAAGCTGTTTGATCGGAGCGTGGACTTGGCTCAGTTCAGTGAGAACACACCTC TGTACCCGATCTGCCGAGCCTGGATGCGCAACAGCCCCTCCGTGCGCGAGCGGGAACGCT CCCCCAGCTCACCGCTGCCCCCGCTGCCTGAGGATGAGGAGGGTTCAGAGGTCACCAACA GCAAGAGTCGAGACGTGTATAAGCTGCCTCCACCCACAGCTCCTGGGCCACCTGGAGACA CCTGCAGATCCCGAATTCCATCCCCGCTCCAGCCTGAGACCCAGGGTGCCCCTGATGACG AGCCCTCCGAGCCTGAGCCCTCACCCTCCACTCTCATCTACCGAAACATGCAGCGCTGGA AACGCATCCGCCAGAGGTGGAAGGAGGCATCCCATCGGAACCAGCTTCGTTACTCGGAAA GCATGAAGATCCTACGGGAGATGTACGAGCGACAGTGATGTTCCCTTGTCCCCCCACCTC AATAAACATTCCCCTGCCCCAAAAAAAAAAAAAAAATTGGACAGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-171, gnl|bosTau2|chr18 (36895041-36895212) | |
| 1-171, gnl|canFam2|chr1 (119795156-119794858) | |
| 1-171, gnl|echTel1|scaffold_212819 (6-273) | |
| 1-171, gnl|hg17|chr19 (40931228-40931508) | |
| 1-171, gnl|Hg17|chr19 (40931329-40931499) | |
| 1-171, gnl|loxAfr1|scaffold_127613 (4784-5082) | |
| 1-171, gnl|mm7|chr7 (27500951-27500658) | |
| 1-171, gnl|Mm7|chr7 (27500833-27500665) | |
| 1-171, gnl|monDom2|scaffold_139 (1892657-1893035) | |
| 1-171, gnl|oryCun1|scaffold_163710 (7966-7664) | |
| 1-171, gnl|panTro1|chr20 (37763266-37763546) | |
| 1-171, gnl|rheMac2|chr19 (42230874-42231155) | |
| 1-171, gnl|rn3|chr1 (85683338-85683045) | |
| 420-603, gnl|bosTau2|chr18 (36898681-36898864) | |
| 420-603, gnl|canFam2|chr1 (119791311-119791118) | |
| 420-603, gnl|danRer3|chr15 (42259993-42260160) | |
| 420-603, gnl|echTel1|scaffold_314012 (80774-80963) | |
| 420-603, gnl|fr1|chrUn (51332526-51332704) | |
| 420-603, gnl|hg17|chr19 (40935813-40936006) | |
| 420-603, gnl|Hg17|chr19 (40935833-40936024) | |
| 420-603, gnl|loxAfr1|scaffold_70145 (4684-4490) | |
| 420-603, gnl|mm7|chr7 (27498263-27498065) | |
| 420-603, gnl|Mm7|chr7 (27498242-27498059) | |
| 420-603, gnl|monDom2|scaffold_139 (1894559-1894758) | |
| 420-603, gnl|oryCun1|scaffold_163710 (5302-5108) | |
| 420-603, gnl|panTro1|chr20 (37768052-37768246) | |
| 420-603, gnl|rheMac2|chr19 (42235779-42235972) | |
| 420-603, gnl|rn3|chr1 (85680748-85680553) | |
| 420-603, gnl|tetNig1|chr8 (5968112-5967934) | |
| 795-921, gnl|bosTau2|chr18 (36899774-36899905) | |
| 795-921, gnl|canFam2|chr1 (119790255-119790150) | |
| 795-921, gnl|danRer3|chr15 (42262457-42262537) | |
| 795-921, gnl|dasNov1|scaffold_59470 (9547-9651) | |
| 795-921, gnl|echTel1|scaffold_314012 (81918-82033) | |
| 795-921, gnl|fr1|chrUn (51333348-51333428) | |
| 795-921, gnl|hg17|chr19 (40937119-40937213) | |
| 795-921, gnl|Hg17|chr19 (40937132-40937258) | |
| 795-921, gnl|loxAfr1|scaffold_70145 (3218-3109) | |
| 795-921, gnl|mm7|chr7 (27496848-27496754) | |
| 795-921, gnl|Mm7|chr7 (27496833-27496707) | |
| 795-921, gnl|monDom2|scaffold_139 (1895196-1895290) | |
| 795-921, gnl|oryCun1|scaffold_163710 (4109-4007) | |
| 795-921, gnl|panTro1|chr20 (37769386-37769480) | |
| 795-921, gnl|rheMac2|chr19 (42237078-42237172) | |
| 795-921, gnl|rn3|chr1 (85679508-85679414) | |
| 795-921, gnl|tetNig1|chr8 (5967212-5967120) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-171, gnl|bosTau2|chr18 (36895041-36895212) | |
| 1-171, gnl|canFam2|chr1 (119795156-119794858) | |
| 1-171, gnl|echTel1|scaffold_212819 (6-273) | |
| 1-171, gnl|hg17|chr19 (40931228-40931508) | |
| 1-171, gnl|Hg17|chr19 (40931329-40931499) | |
| 1-171, gnl|loxAfr1|scaffold_127613 (4784-5082) | |
| 1-171, gnl|mm7|chr7 (27500951-27500658) | |
| 1-171, gnl|Mm7|chr7 (27500833-27500665) | |
| 1-171, gnl|monDom2|scaffold_139 (1892657-1893035) | |
| 1-171, gnl|oryCun1|scaffold_163710 (7966-7664) | |
| 1-171, gnl|panTro1|chr20 (37763266-37763546) | |
| 1-171, gnl|rheMac2|chr19 (42230874-42231155) | |
| 1-171, gnl|rn3|chr1 (85683338-85683045) | |
| 420-603, gnl|bosTau2|chr18 (36898681-36898864) | |
| 420-603, gnl|canFam2|chr1 (119791311-119791118) | |
| 420-603, gnl|danRer3|chr15 (42259993-42260160) | |
| 420-603, gnl|echTel1|scaffold_314012 (80774-80963) | |
| 420-603, gnl|fr1|chrUn (51332526-51332704) | |
| 420-603, gnl|hg17|chr19 (40935813-40936006) | |
| 420-603, gnl|Hg17|chr19 (40935833-40936024) | |
| 420-603, gnl|loxAfr1|scaffold_70145 (4684-4490) | |
| 420-603, gnl|mm7|chr7 (27498263-27498065) | |
| 420-603, gnl|Mm7|chr7 (27498242-27498059) | |
| 420-603, gnl|monDom2|scaffold_139 (1894559-1894758) | |
| 420-603, gnl|oryCun1|scaffold_163710 (5302-5108) | |
| 420-603, gnl|panTro1|chr20 (37768052-37768246) | |
| 420-603, gnl|rheMac2|chr19 (42235779-42235972) | |
| 420-603, gnl|rn3|chr1 (85680748-85680553) | |
| 420-603, gnl|tetNig1|chr8 (5968112-5967934) | |
| 795-921, gnl|bosTau2|chr18 (36899774-36899905) | |
| 795-921, gnl|canFam2|chr1 (119790255-119790150) | |
| 795-921, gnl|danRer3|chr15 (42262457-42262537) | |
| 795-921, gnl|dasNov1|scaffold_59470 (9547-9651) | |
| 795-921, gnl|echTel1|scaffold_314012 (81918-82033) | |
| 795-921, gnl|fr1|chrUn (51333348-51333428) | |
| 795-921, gnl|hg17|chr19 (40937119-40937213) | |
| 795-921, gnl|Hg17|chr19 (40937132-40937258) | |
| 795-921, gnl|loxAfr1|scaffold_70145 (3218-3109) | |
| 795-921, gnl|mm7|chr7 (27496848-27496754) | |
| 795-921, gnl|Mm7|chr7 (27496833-27496707) | |
| 795-921, gnl|monDom2|scaffold_139 (1895196-1895290) | |
| 795-921, gnl|oryCun1|scaffold_163710 (4109-4007) | |
| 795-921, gnl|panTro1|chr20 (37769386-37769480) | |
| 795-921, gnl|rheMac2|chr19 (42237078-42237172) | |
| 795-921, gnl|rn3|chr1 (85679508-85679414) | |
| 795-921, gnl|tetNig1|chr8 (5967212-5967120) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| col (0.390016) | |
| nca (0.273748) | |
| nlu (0.191681) | |
| cje (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| nca (0.273748) | |
| nlu (0.191681) | |
| cje (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| jej (0.0989218) |