Non-Coding RNA Search

Ss1.1-Utr1-UTR010076A05.5.5

Sequence:


               
               ACCCATTTGAGTGGGACTTGCCTGCTCCCCTCACACACTGTCCTCTCCTGTTCTCCAGCA
TGTTGCATCTGTGTTTCTCCAGAGGCTTCTGGATGGCAGCTCTGACCATGATGCTGGTGG
TGCTGAGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGGGA
AGGCTGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGAGGTTTCTGGACAGATACTTCT
ATAATGGAGATGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGGGAAGTGACCG
AATTTGGGCGGCCAGACGCCAAGTACTGGAACAGCCAGAAGGACTTCATGGAGCAGAAGC
GGGCGGAGGTGGACACGGTGTGCAGACACAACTACGAGATCTTAGAGACCTTCCTCGTGC
CGCGGCGAGCTGAGCCCAGAGTGACAGTGTACCCTGCAAAGACCCAGCCCCTGCAGCACC
ACAACCTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCATGTGGAGGTCAGGTGGT
TCCGGAATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAG
ACTGGACCTTCCAGACCATGGTGATGCTTGAAACTGTTCCTCAGAGTGGAGAGGTCTACA
CCTGCCGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGT
CTGAATCTGCTCAGGGCAAGATGATGAGTGGGATCGGGGGCTTCGTCCTGGGTCTGCTCT
TTGTTGCTGTGGGGCTGTTCATCTACTTCAAGAATCAGAAAGGACGCCCTGCCCTTCAGC
CAACAGGCCTCCTGAGCTGAAGTGCAGATGGTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCATTTGAGTGGGACTTGCCTGCTCCCCTCACACACTGTCCTCTCCTGTTCTCCAGCA
TGTTGCATCTGTGTTTCTCCAGAGGCTTCTGGATGGCAGCTCTGACCATGATGCTGGTGG
TGCTGAGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGGGA
AGGCTGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGAGGTTTCTGGACAGATACTTCT
ATAATGGAGATGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGGGAAGTGACCG
AATTTGGGCGGCCAGACGCCAAGTACTGGAACAGCCAGAAGGACTTCATGGAGCAGAAGC
GGGCGGAGGTGGACACGGTGTGCAGACACAACTACGAGATCTTAGAGACCTTCCTCGTGC
CGCGGCGAGCTGAGCCCAGAGTGACAGTGTACCCTGCAAAGACCCAGCCCCTGCAGCACC
ACAACCTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCATGTGGAGGTCAGGTGGT
TCCGGAATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAG
ACTGGACCTTCCAGACCATGGTGATGCTTGAAACTGTTCCTCAGAGTGGAGAGGTCTACA
CCTGCCGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGT
CTGAATCTGCTCAGGGCAAGATGATGAGTGGGATCGGGGGCTTCGTCCTGGGTCTGCTCT
TTGTTGCTGTGGGGCTGTTCATCTACTTCAAGAATCAGAAAGGACGCCCTGCCCTTCAGC
CAACAGGCCTCCTGAGCTGAAGTGCAGATGGTGACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8SPB1_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8SPB1_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               511-630, + strand, RNAz p=0.524852

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               511-630, + strand, RNAz p=0.524852

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-159, gnl|bosTau2|chr23 (21236051-21236209)
               

               
               1-159, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-159, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-159, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-159, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-159, gnl|Hg17|chr6 (32665555-32665398)
               

               
               1-159, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-159, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-159, gnl|Mm7|chr17 (32383232-32383372)
               

               
               1-159, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-159, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-159, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-159, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-159, gnl|rn3|chr20 (4681120-4681258)
               


               
               432-728, gnl|bosTau2|chr23 (21244789-21245086)
               

               
               432-728, gnl|Hg17|chr6 (32657591-32657293)
               

               
               432-728, gnl|Mm7|chr17 (32391497-32391797)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr23 (21236051-21236209)
               

               
               1-159, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-159, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-159, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-159, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-159, gnl|Hg17|chr6 (32665555-32665398)
               

               
               1-159, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-159, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-159, gnl|Mm7|chr17 (32383232-32383372)
               

               
               1-159, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-159, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-159, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-159, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-159, gnl|rn3|chr20 (4681120-4681258)
               


               
               432-728, gnl|bosTau2|chr23 (21244789-21245086)
               

               
               432-728, gnl|Hg17|chr6 (32657591-32657293)
               

               
               432-728, gnl|Mm7|chr17 (32391497-32391797)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cly (1.08578)
               

               
               cag (0.453583)
               

               
               cty (0.31224)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               nep (0.183925)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (1.08578)
               

               
               cag (0.453583)
               

               
               cty (0.31224)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               nep (0.183925)

	1-159, gnl\|bosTau2\|chr23 (21236051-21236209)
	1-159, gnl\|canFam2\|chr12 (5254003-5254141)
	1-159, gnl\|dasNov1\|scaffold_23750 (14255-14386)
	1-159, gnl\|echTel1\|scaffold_103957 (609-463)
	1-159, gnl\|hg17\|chr6 (32665390-32665536)
	1-159, gnl\|Hg17\|chr6 (32665555-32665398)
	1-159, gnl\|loxAfr1\|scaffold_36898 (7532-7395)
	1-159, gnl\|mm7\|chr17 (32383382-32383244)
	1-159, gnl\|Mm7\|chr17 (32383232-32383372)
	1-159, gnl\|monDom2\|scaffold_42 (16267144-16266995)
	1-159, gnl\|oryCun1\|scaffold_173411 (15197-15065)
	1-159, gnl\|panTro1\|chr5 (33118451-33118597)
	1-159, gnl\|rheMac2\|chr4 (32322304-32322450)
	1-159, gnl\|rn3\|chr20 (4681120-4681258)

	432-728, gnl\|bosTau2\|chr23 (21244789-21245086)
	432-728, gnl\|Hg17\|chr6 (32657591-32657293)
	432-728, gnl\|Mm7\|chr17 (32391497-32391797)

	cly (1.08578)
	cag (0.453583)
	cty (0.31224)
	cga (0.279096)
	cov (0.264306)
	nep (0.183925)