Non-Coding RNA Search

Ss1.1-Utr1-UTR010076C04.5.13

Sequence:


               
               CTTCTTCCTTTCTCCAATTTTGCAAGGTAGAAAGCAGTAGAGTAGGTTCCGGAAGCCCAG
CACAGCTGGAGCAGCAGAGGCCGCAGCTGGAAGCAGGAAGAGGCGAGCGTCTGCCCTGAG
GAAGGGCAGGGTGTTCGCTCCCGGCTCACAGCTGGGTTAGCCCATGCTACGGTCGACATT
GAGCTTTAACATCTGGGACCCGGCTGGGGCAGCAGAGACCTGCGCGCAGTGGGCGCGGCC
GATGCGCCAGGCTGGAGGGTGAGCGTCGCGCCGGGGCTGGGACAGAGTTGGCACCTCCGG
ATAAGGCCCAGAGCGGCCAGGGGGCCTCCGCGATGCCAAGCGAAAATATCTTCCTGTTTG
TGCCTAACCTTATTGGTTATGCCCGGATTGTCTTCGCCATCATTTCTTTCTACTTCATGC
CCTGCTGCCCCTTCACGGCCTCCTCCTTCTACCTGCTCAGCGGACTTCTGGACGCTTTTG
ATGGACACGCTGCTCGAGTCCTTAATCAAGGGACCCGGTTTGGGGCCATGCTGGACATGT
TGACAGACCGCTGCTCCACCATGTGTCTGCTGGTCAACCTGGCCCTGCTGTACCCTCGAG
CCACCCTTCTCTTCCAGCTCAGCATGAGCTTGGATGTGGCCAGCCACTGGCTGCACCTTC
ACAGTTCTGTGGTCCGAGGCAGTGAAAGTCACAAGATGATTGACCTGTCGGGAAATCCAG
TGCTTCGCATCTACTACACCTCCAGGCCTGCTCTGTTTACCCTGTGTGCGGGAAATGAGC
TCTTCTACTGCCTCCTCTACCTGTTCAATTTCTCCGAGGGCCCTTTAGTGGGCTCTGTGG
GCCTTTTCCGGATGGGCCTCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTCCTTTCTCCAATTTTGCAAGGTAGAAAGCAGTAGAGTAGGTTCCGGAAGCCCAG
CACAGCTGGAGCAGCAGAGGCCGCAGCTGGAAGCAGGAAGAGGCGAGCGTCTGCCCTGAG
GAAGGGCAGGGTGTTCGCTCCCGGCTCACAGCTGGGTTAGCCCATGCTACGGTCGACATT
GAGCTTTAACATCTGGGACCCGGCTGGGGCAGCAGAGACCTGCGCGCAGTGGGCGCGGCC
GATGCGCCAGGCTGGAGGGTGAGCGTCGCGCCGGGGCTGGGACAGAGTTGGCACCTCCGG
ATAAGGCCCAGAGCGGCCAGGGGGCCTCCGCGATGCCAAGCGAAAATATCTTCCTGTTTG
TGCCTAACCTTATTGGTTATGCCCGGATTGTCTTCGCCATCATTTCTTTCTACTTCATGC
CCTGCTGCCCCTTCACGGCCTCCTCCTTCTACCTGCTCAGCGGACTTCTGGACGCTTTTG
ATGGACACGCTGCTCGAGTCCTTAATCAAGGGACCCGGTTTGGGGCCATGCTGGACATGT
TGACAGACCGCTGCTCCACCATGTGTCTGCTGGTCAACCTGGCCCTGCTGTACCCTCGAG
CCACCCTTCTCTTCCAGCTCAGCATGAGCTTGGATGTGGCCAGCCACTGGCTGCACCTTC
ACAGTTCTGTGGTCCGAGGCAGTGAAAGTCACAAGATGATTGACCTGTCGGGAAATCCAG
TGCTTCGCATCTACTACACCTCCAGGCCTGCTCTGTTTACCCTGTGTGCGGGAAATGAGC
TCTTCTACTGCCTCCTCTACCTGTTCAATTTCTCCGAGGGCCCTTTAGTGGGCTCTGTGG
GCCTTTTCCGGATGGGCCTCTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21362277|ref|NP_620093.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21362277|ref|NP_620093.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-377, gnl|bosTau2|chr25 (24586048-24585660)
               

               
               5-377, gnl|Hg17|chr16 (29782038-29781635)
               

               
               5-377, gnl|Mm7|chr7 (123073002-123073366)
               


               
               509-669, gnl|bosTau2|chr25 (24584722-24584562)
               

               
               509-669, gnl|Hg17|chr16 (29780083-29779923)
               

               
               509-669, gnl|Mm7|chr7 (123074818-123074978)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-377, gnl|bosTau2|chr25 (24586048-24585660)
               

               
               5-377, gnl|Hg17|chr16 (29782038-29781635)
               

               
               5-377, gnl|Mm7|chr7 (123073002-123073366)
               


               
               509-669, gnl|bosTau2|chr25 (24584722-24584562)
               

               
               509-669, gnl|Hg17|chr16 (29780083-29779923)
               

               
               509-669, gnl|Mm7|chr7 (123074818-123074978)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	5-377, gnl\|bosTau2\|chr25 (24586048-24585660)
	5-377, gnl\|Hg17\|chr16 (29782038-29781635)
	5-377, gnl\|Mm7\|chr7 (123073002-123073366)

	509-669, gnl\|bosTau2\|chr25 (24584722-24584562)
	509-669, gnl\|Hg17\|chr16 (29780083-29779923)
	509-669, gnl\|Mm7\|chr7 (123074818-123074978)