Ss1.1-Utr1-UTR010076D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCGTCCGCCTAGGTGCCATGGTGCCGCCGCCCCTGCCGCCGCCGCCGCTCTGCACGCT GCCGCCGGGCCCTGGACCCCCGCGCTTCGTGTGCTACTGCGAGGGGGAGGGAAGTGGGGC CGGGGGACGTGGCGGTTTCAACCTCTATGTGACGGACGCCGCGGAGCTTTGGAGCACCTG CTTCACGCCGGACAGCCTGGCGGCCCTCGACGACAGGGCATCCCTGACCCTCTCTGGGGG GCCCTCACCGCTGGACTTTGACCTCTCCAAGGTGCCTGGCCCGGAGGCAGCCTCCAGGTT GCGGGCACTGACACTGGGCCTGGCAGAGCGCCTGTGCAGCTTGGAGCGGCAGCTGGCAGG TCCCCCTACCCGCGCCTCCATTTCTGCTTTCCCCCAGCTGCGGAGGAGGAGACATCCACC AGCCCCCGCAAGAGCCCCTGGCAGGTGGGCTCTCAACACTTCTTGCCAGACCTGGATCCT CAGAGAGGTGGCCCTGGACCTGGGGTCAAGAGACGGTGCCCAGGAGAGTCTCTCATCAAC CCCGGCTTCAAGAGGTGCCCCGCCACCCTTGCCTCCTGTGCCCAGGGTTTAGCCCCTCCA CCCCCATAATGCCACCCCCTCTTCTCTCCCAGGAAGAAAACCCGCTGGTGGTGTAGACTT CGATGACCCCTGAAAGTGCAGCAAAGAGTGCGGTCATGGCCCTCAGGAGTCTGTCCATGA GAGGAGGGGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCGTCCGCCTAGGTGCCATGGTGCCGCCGCCCCTGCCGCCGCCGCCGCTCTGCACGCT GCCGCCGGGCCCTGGACCCCCGCGCTTCGTGTGCTACTGCGAGGGGGAGGGAAGTGGGGC CGGGGGACGTGGCGGTTTCAACCTCTATGTGACGGACGCCGCGGAGCTTTGGAGCACCTG CTTCACGCCGGACAGCCTGGCGGCCCTCGACGACAGGGCATCCCTGACCCTCTCTGGGGG GCCCTCACCGCTGGACTTTGACCTCTCCAAGGTGCCTGGCCCGGAGGCAGCCTCCAGGTT GCGGGCACTGACACTGGGCCTGGCAGAGCGCCTGTGCAGCTTGGAGCGGCAGCTGGCAGG TCCCCCTACCCGCGCCTCCATTTCTGCTTTCCCCCAGCTGCGGAGGAGGAGACATCCACC AGCCCCCGCAAGAGCCCCTGGCAGGTGGGCTCTCAACACTTCTTGCCAGACCTGGATCCT CAGAGAGGTGGCCCTGGACCTGGGGTCAAGAGACGGTGCCCAGGAGAGTCTCTCATCAAC CCCGGCTTCAAGAGGTGCCCCGCCACCCTTGCCTCCTGTGCCCAGGGTTTAGCCCCTCCA CCCCCATAATGCCACCCCCTCTTCTCTCCCAGGAAGAAAACCCGCTGGTGGTGTAGACTT CGATGACCCCTGAAAGTGCAGCAAAGAGTGCGGTCATGGCCCTCAGGAGTCTGTCCATGA GAGGAGGGGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 209-361, + strand, RNAz p=0.738618 | |
| 504-603, - strand, RNAz p=0.702024 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 209-361, + strand, RNAz p=0.738618 | |
| 504-603, - strand, RNAz p=0.702024 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 25-168, gnl|bosTau2|chr11 (86322245-86322392) | |
| 25-168, gnl|canFam2|chr9 (51972418-51972168) | |
| 25-168, gnl|echTel1|scaffold_242792 (772-1032) | |
| 25-168, gnl|hg17|chr9 (137162623-137162875) | |
| 25-168, gnl|Hg17|chr9 (137162723-137162873) | |
| 25-168, gnl|mm7|chr2 (25468297-25468079) | |
| 25-168, gnl|Mm7|chr2 (25468209-25468074) | |
| 25-168, gnl|monDom2|scaffold_1 (188298274-188298034) | |
| 25-168, gnl|rheMac2|chr15 (1266404-1266152) | |
| 25-168, gnl|rn3|chr3 (3627057-3626839) | |
| 209-361, gnl|bosTau2|chr11 (86322893-86323045) | |
| 209-361, gnl|Hg17|chr9 (137163382-137163534) | |
| 209-361, gnl|Mm7|chr2 (25467628-25467476) | |
| 466-696, gnl|bosTau2|chr11 (86323353-86323603) | |
| 466-696, gnl|canFam2|chr9 (51971250-51970966) | |
| 466-696, gnl|dasNov1|scaffold_184281 (620-348) | |
| 466-696, gnl|hg17|chr9 (137163824-137164111) | |
| 466-696, gnl|Hg17|chr9 (137163865-137164121) | |
| 466-696, gnl|loxAfr1|scaffold_183330 (1239-949) | |
| 466-696, gnl|mm7|chr2 (25467216-25466961) | |
| 466-696, gnl|Mm7|chr2 (25467176-25466947) | |
| 466-696, gnl|monDom2|scaffold_1 (188296253-188295928) | |
| 466-696, gnl|panTro1|chr11_random (10787924-10788211) | |
| 466-696, gnl|rheMac2|chr15 (1265194-1264908) | |
| 466-696, gnl|rn3|chr3 (3625970-3625714) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-168, gnl|bosTau2|chr11 (86322245-86322392) | |
| 25-168, gnl|canFam2|chr9 (51972418-51972168) | |
| 25-168, gnl|echTel1|scaffold_242792 (772-1032) | |
| 25-168, gnl|hg17|chr9 (137162623-137162875) | |
| 25-168, gnl|Hg17|chr9 (137162723-137162873) | |
| 25-168, gnl|mm7|chr2 (25468297-25468079) | |
| 25-168, gnl|Mm7|chr2 (25468209-25468074) | |
| 25-168, gnl|monDom2|scaffold_1 (188298274-188298034) | |
| 25-168, gnl|rheMac2|chr15 (1266404-1266152) | |
| 25-168, gnl|rn3|chr3 (3627057-3626839) | |
| 209-361, gnl|bosTau2|chr11 (86322893-86323045) | |
| 209-361, gnl|Hg17|chr9 (137163382-137163534) | |
| 209-361, gnl|Mm7|chr2 (25467628-25467476) | |
| 466-696, gnl|bosTau2|chr11 (86323353-86323603) | |
| 466-696, gnl|canFam2|chr9 (51971250-51970966) | |
| 466-696, gnl|dasNov1|scaffold_184281 (620-348) | |
| 466-696, gnl|hg17|chr9 (137163824-137164111) | |
| 466-696, gnl|Hg17|chr9 (137163865-137164121) | |
| 466-696, gnl|loxAfr1|scaffold_183330 (1239-949) | |
| 466-696, gnl|mm7|chr2 (25467216-25466961) | |
| 466-696, gnl|Mm7|chr2 (25467176-25466947) | |
| 466-696, gnl|monDom2|scaffold_1 (188296253-188295928) | |
| 466-696, gnl|panTro1|chr11_random (10787924-10788211) | |
| 466-696, gnl|rheMac2|chr15 (1265194-1264908) | |
| 466-696, gnl|rn3|chr3 (3625970-3625714) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |