Ss1.1-Utr1-UTR010076F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAACATTGCAACTATGAAGTATGGAGCCCAGGTGGTAAAAGGGGAGCTGAAGTCTGC CTTATTAGATGGTGACACTCAAAATTATGATCTGGATCATGGATTTTCTCGGCACCCAAT TGATGATGACTGCCGTTCTGGCATCGAGATTAAGCTAGGTCAGCCGTCCATTATCAATCA TATCCGCATCCTGCTGTGGGACCGAGATAGCCGGTCTTACTCATACTTCATTGAGGTGTC AATGGATGAACTCGATTGGATCAGAGTGATCGATCATTCGCAATATCTGTGTCGTTCTTG GCAAAAGTTATATTTTCCAGCCCGTGTCTGCAGGTATATTCGAATAGTTGGGACTCACAA CACAGTGAACAAGATTTTCCACATTGTGGCTTTTGAATGTATGTTTACAAACAAAACCTT CACTCTGGAGAAAGGGCTGATAGTTCCCATGGAGAATGTTGCGACAATTGCTGATTGTGC CAGTGTGATTGAAGGGGTCAGTCGGAGCCGAAATGCCTTGCTGAACGGGGACACCAAGAA CTACGATTGGGATTCTGGCTACACGTGTCATCAGCTAGGAAGTGGTGCAATTGTGGTTCA GCTGGCACAGCCATACATGATCGGATCAATACGGTTGTTGCTGTGGGACTGTGATGATCG GAGCTATAGCTACTACGTTGAGGTTTCCACCAACCAGCAGCAGTGGACCATGGTAGCCGA CAGGACAAAAGTCTCCTGCAAGTCCTGGCAATCGGTGACTTTTGAAAGACAGCCCGCCTC CTTCATCCGAATCGTTGGAACACACAACACAGCAAATGAGGTTTTCCACTGTGTCCACTT TGAGTGTCCCGAGCAGCAGAGCAGCCAGAAGGAGGAGAACAGCGAGGAGCTGGGGACCGG GGACACCAGTCCGGCCAGTCATCAGCTCGACCCCCACGCCCTGCAGGCCCCCAGTGGCAA TGCTCTGCCCGCCAGCCCAGGCGCCCCCTCGCGCTCCCCGAACCGGCAGCACCGATAAAG GAGGCGCACACGCGGAGTGCCTCGGGTGGGCGCAGGTGGCACAGGAACCCCCCCACCCTG AGCAGGGGTCTTTGTGGAATGTCCTCCCCTCCCCGCCCGCCCCTGTGAGGAGCAGACCTG GCTGCACACAGGGACACAGGACAGCTTTCCTCCCGAGGACACAAAGGGGCTGCTTTGTTC TCAGTTTGTTCGCATCAGACTGGTCTCCGGGGAAGAGAGTGGGTCTTCAGTCCTCACCGA GTCCACCGTTAGCACCGTCCCGCCCTCGGCTCACCCTGCACGGGGCGCAGGGGAAGCTGC AGCGGGAATAAGCAGTGGCGAGGGAACCCGGGGACGCGGAGAACACGCTAGGCCTCTATC ACCTGGAGGCGCCTTAGGAAATGGGTTTCCGTGGAGTGTTTACATTTCTGGAACACATCG CCCTGGCAACGAAATGATTTTTTATTTCTTTTAGTTATTCTCCATTTGCTGAATCATAGG TGTTCCAGATCTCTTTGAAAGGCTCAAACAGCAAATCACTTGTTTTAATCCCTTTTGACG CTGTAATTTTCCTTCCTTAGTTCTGAGCGATTGTGCGTGGGGTAGAGCCGAGGGACATCG TGCACGGCTCCTAAATGAGGCCCAGATGCAGCTCATCACGGCACCTGGTCTGACAAGGAA AATCCTTTGAGGAAGTTCAACAAAATACACAATGAGCAAATCAATCTGTGGACACTGGAG TTAATAATCACTCGAATTGCTAAGTTATTAACCTGTCATTCCTGAAATGCATCCAGCCTT TAAGCTTGGGAGGCTGACAAGGAAATAGCGATTATGCCACCTGCTAATGTCATGTTCAGA AGTAAGTGTAGATAAATGTTTACTAACTTCCGGTTGGGCTGAACCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAACATTGCAACTATGAAGTATGGAGCCCAGGTGGTAAAAGGGGAGCTGAAGTCTGC CTTATTAGATGGTGACACTCAAAATTATGATCTGGATCATGGATTTTCTCGGCACCCAAT TGATGATGACTGCCGTTCTGGCATCGAGATTAAGCTAGGTCAGCCGTCCATTATCAATCA TATCCGCATCCTGCTGTGGGACCGAGATAGCCGGTCTTACTCATACTTCATTGAGGTGTC AATGGATGAACTCGATTGGATCAGAGTGATCGATCATTCGCAATATCTGTGTCGTTCTTG GCAAAAGTTATATTTTCCAGCCCGTGTCTGCAGGTATATTCGAATAGTTGGGACTCACAA CACAGTGAACAAGATTTTCCACATTGTGGCTTTTGAATGTATGTTTACAAACAAAACCTT CACTCTGGAGAAAGGGCTGATAGTTCCCATGGAGAATGTTGCGACAATTGCTGATTGTGC CAGTGTGATTGAAGGGGTCAGTCGGAGCCGAAATGCCTTGCTGAACGGGGACACCAAGAA CTACGATTGGGATTCTGGCTACACGTGTCATCAGCTAGGAAGTGGTGCAATTGTGGTTCA GCTGGCACAGCCATACATGATCGGATCAATACGGTTGTTGCTGTGGGACTGTGATGATCG GAGCTATAGCTACTACGTTGAGGTTTCCACCAACCAGCAGCAGTGGACCATGGTAGCCGA CAGGACAAAAGTCTCCTGCAAGTCCTGGCAATCGGTGACTTTTGAAAGACAGCCCGCCTC CTTCATCCGAATCGTTGGAACACACAACACAGCAAATGAGGTTTTCCACTGTGTCCACTT TGAGTGTCCCGAGCAGCAGAGCAGCCAGAAGGAGGAGAACAGCGAGGAGCTGGGGACCGG GGACACCAGTCCGGCCAGTCATCAGCTCGACCCCCACGCCCTGCAGGCCCCCAGTGGCAA TGCTCTGCCCGCCAGCCCAGGCGCCCCCTCGCGCTCCCCGAACCGGCAGCACCGATAAAG GAGGCGCACACGCGGAGTGCCTCGGGTGGGCGCAGGTGGCACAGGAACCCCCCCACCCTG AGCAGGGGTCTTTGTGGAATGTCCTCCCCTCCCCGCCCGCCCCTGTGAGGAGCAGACCTG GCTGCACACAGGGACACAGGACAGCTTTCCTCCCGAGGACACAAAGGGGCTGCTTTGTTC TCAGTTTGTTCGCATCAGACTGGTCTCCGGGGAAGAGAGTGGGTCTTCAGTCCTCACCGA GTCCACCGTTAGCACCGTCCCGCCCTCGGCTCACCCTGCACGGGGCGCAGGGGAAGCTGC AGCGGGAATAAGCAGTGGCGAGGGAACCCGGGGACGCGGAGAACACGCTAGGCCTCTATC ACCTGGAGGCGCCTTAGGAAATGGGTTTCCGTGGAGTGTTTACATTTCTGGAACACATCG CCCTGGCAACGAAATGATTTTTTATTTCTTTTAGTTATTCTCCATTTGCTGAATCATAGG TGTTCCAGATCTCTTTGAAAGGCTCAAACAGCAAATCACTTGTTTTAATCCCTTTTGACG CTGTAATTTTCCTTCCTTAGTTCTGAGCGATTGTGCGTGGGGTAGAGCCGAGGGACATCG TGCACGGCTCCTAAATGAGGCCCAGATGCAGCTCATCACGGCACCTGGTCTGACAAGGAA AATCCTTTGAGGAAGTTCAACAAAATACACAATGAGCAAATCAATCTGTGGACACTGGAG TTAATAATCACTCGAATTGCTAAGTTATTAACCTGTCATTCCTGAAATGCATCCAGCCTT TAAGCTTGGGAGGCTGACAAGGAAATAGCGATTATGCCACCTGCTAATGTCATGTTCAGA AGTAAGTGTAGATAAATGTTTACTAACTTCCGGTTGGGCTGAACCTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-215, gnl|bosTau2|chr23 (11103907-11103693) | |
| 1-215, gnl|canFam2|chr12 (10504539-10504817) | |
| 1-215, gnl|danRer3|chrNA (90622835-90623106) | |
| 1-215, gnl|dasNov1|scaffold_4273 (56729-57007) | |
| 1-215, gnl|fr1|chrUn (245785354-245785104) | |
| 1-215, gnl|galGal2|chr3 (25850911-25850647) | |
| 1-215, gnl|hg17|chr6 (38655966-38656241) | |
| 1-215, gnl|Hg17|chr6 (38656184-38655970) | |
| 1-215, gnl|loxAfr1|scaffold_26069 (1494-1193) | |
| 1-215, gnl|mm7|chr17 (28708352-28708622) | |
| 1-215, gnl|Mm7|chr17 (28708570-28708356) | |
| 1-215, gnl|monDom2|scaffold_42 (7212935-7212668) | |
| 1-215, gnl|oryCun1|scaffold_213560 (41488-41214) | |
| 1-215, gnl|panTro1|chr5 (39198301-39198566) | |
| 1-215, gnl|rheMac2|chr4 (38396221-38396493) | |
| 1-215, gnl|rn3|chr20_random (186040-185758) | |
| 1-215, gnl|tetNig1|chrUn_random (114979362-114979592) | |
| 1-215, gnl|xenTro1|scaffold_702 (118997-118731) | |
| 442-635, gnl|bosTau2|chr23 (11528614-11528807) | |
| 442-635, gnl|canFam2|chr12 (10261932-10262137) | |
| 442-635, gnl|danRer3|chrNA (90618527-90618728) | |
| 442-635, gnl|dasNov1|scaffold_6794 (37586-37792) | |
| 442-635, gnl|echTel1|scaffold_278785 (3446-3652) | |
| 442-635, gnl|fr1|chrUn (245786664-245786463) | |
| 442-635, gnl|galGal2|chr3 (25914180-25913974) | |
| 442-635, gnl|hg17|chr6 (38364024-38364230) | |
| 442-635, gnl|Hg17|chr6 (38364217-38364024) | |
| 442-635, gnl|loxAfr1|scaffold_30821 (26417-26623) | |
| 442-635, gnl|mm7|chr17 (28490783-28490989) | |
| 442-635, gnl|Mm7|chr17 (28490976-28490783) | |
| 442-635, gnl|monDom2|scaffold_42 (7481350-7481144) | |
| 442-635, gnl|oryCun1|scaffold_92711 (4936-4731) | |
| 442-635, gnl|panTro1|chr5 (38860378-38860584) | |
| 442-635, gnl|rheMac2|chr4 (38098668-38098874) | |
| 442-635, gnl|rn3|chr20 (8616133-8616339) | |
| 442-635, gnl|tetNig1|chrUn_random (114978465-114978670) | |
| 442-635, gnl|xenTro1|scaffold_702 (141930-141730) | |
| 819-1876, gnl|bosTau2|chr23 (11630105-11631148) | |
| 819-1876, gnl|Hg17|chr6 (38250938-38249876) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-215, gnl|bosTau2|chr23 (11103907-11103693) | |
| 1-215, gnl|canFam2|chr12 (10504539-10504817) | |
| 1-215, gnl|danRer3|chrNA (90622835-90623106) | |
| 1-215, gnl|dasNov1|scaffold_4273 (56729-57007) | |
| 1-215, gnl|fr1|chrUn (245785354-245785104) | |
| 1-215, gnl|galGal2|chr3 (25850911-25850647) | |
| 1-215, gnl|hg17|chr6 (38655966-38656241) | |
| 1-215, gnl|Hg17|chr6 (38656184-38655970) | |
| 1-215, gnl|loxAfr1|scaffold_26069 (1494-1193) | |
| 1-215, gnl|mm7|chr17 (28708352-28708622) | |
| 1-215, gnl|Mm7|chr17 (28708570-28708356) | |
| 1-215, gnl|monDom2|scaffold_42 (7212935-7212668) | |
| 1-215, gnl|oryCun1|scaffold_213560 (41488-41214) | |
| 1-215, gnl|panTro1|chr5 (39198301-39198566) | |
| 1-215, gnl|rheMac2|chr4 (38396221-38396493) | |
| 1-215, gnl|rn3|chr20_random (186040-185758) | |
| 1-215, gnl|tetNig1|chrUn_random (114979362-114979592) | |
| 1-215, gnl|xenTro1|scaffold_702 (118997-118731) | |
| 442-635, gnl|bosTau2|chr23 (11528614-11528807) | |
| 442-635, gnl|canFam2|chr12 (10261932-10262137) | |
| 442-635, gnl|danRer3|chrNA (90618527-90618728) | |
| 442-635, gnl|dasNov1|scaffold_6794 (37586-37792) | |
| 442-635, gnl|echTel1|scaffold_278785 (3446-3652) | |
| 442-635, gnl|fr1|chrUn (245786664-245786463) | |
| 442-635, gnl|galGal2|chr3 (25914180-25913974) | |
| 442-635, gnl|hg17|chr6 (38364024-38364230) | |
| 442-635, gnl|Hg17|chr6 (38364217-38364024) | |
| 442-635, gnl|loxAfr1|scaffold_30821 (26417-26623) | |
| 442-635, gnl|mm7|chr17 (28490783-28490989) | |
| 442-635, gnl|Mm7|chr17 (28490976-28490783) | |
| 442-635, gnl|monDom2|scaffold_42 (7481350-7481144) | |
| 442-635, gnl|oryCun1|scaffold_92711 (4936-4731) | |
| 442-635, gnl|panTro1|chr5 (38860378-38860584) | |
| 442-635, gnl|rheMac2|chr4 (38098668-38098874) | |
| 442-635, gnl|rn3|chr20 (8616133-8616339) | |
| 442-635, gnl|tetNig1|chrUn_random (114978465-114978670) | |
| 442-635, gnl|xenTro1|scaffold_702 (141930-141730) | |
| 819-1876, gnl|bosTau2|chr23 (11630105-11631148) | |
| 819-1876, gnl|Hg17|chr6 (38250938-38249876) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ldo (0.0970026) |