Non-Coding RNA Search

Ss1.1-Utr1-UTR010076G12.5

Sequence:


               
               TTAGAAGTACGCTACTCTCCTATTGTCAACTGAAATTCAGAGCAGTTTCATGAGTGCCTG
GATCTGGGTCTCCATTTTCATTGATTAACTCAAAGAGTTCTGTGCCCATTTGTATCCATT
TGTTTGCACAGAGCCTGTCCTGAAAGGAGGCCTCTGTCCAGGGTAAGGTGGTCTAGGGAG
CAGGGCTTGTGTGGGGCGGAGCAATCAGCACAGAGAGGTTACAAATGAAAGAGGTGGCTG
GGCTGTGCAGCTCTCTAAGTGGACCTCTCAGGCGGGAAGAAGCGGTGAGGTCAGAGAGTT
CAAAACCCAGTGAAAATGTGCATTGTGGCTGCAGGTTTTGCCCCAACCACAGGGGCTCGG
GCCCGGGGTTCACTGTGGCCTGGGATCAGCCTTGTCTGCAACACATTAGCCCTTTCAGGG
CAGAGGGAGGCCCTGGGCCCAAAGCTGCGTTTTTCTCACCCACCTTTGTTTTTCTCAACG
AAAGACAGAACAAAAACAATGTGCAGACTCGTTGGCTTGATCATTGATTTGCAGAAGGGG
TGGTCTGTGTGTGCTTGTAGTTATGGTTGGGGCAAAGGTCCTTTTTGTAAAGGTTTAACC
TAGTCCTTCTGGGTGGCATCCCGTGAGGTCATGGGCAGAACTCCGCCAAATCTTTGAAGA
CTATTAGTAGTTATCTTAGAAGATCCGGAGTTCAGTGTTCCAAGAACACTTTATTTTTAG
AGCATCTTGGCTCCCGGTGCTGTGGATTCGGGCTCCCTGAGGCGGAAGCCAATCAGAGCT
CCAGTTTGCACTGGGATCTCTAAATTACAGAAACGCCATTGCCCAAGCCTAGCATCTGTT
TTTTGCATCAGACACCAAGTGAGAGCAGCTCTGCTGTGACTCCGGAGCTGTTTTGGACTC
AGAGGCCCCATCTCAGAAGCACACCTTAGGTAACTTGGTCCTTCTGACTTTTTCACCAGC
AGATACATAGGAGGCAGATGAAATGCTGGTTTCTTCTAGTTCCTTCCGTAGCACCCCTCT
TAGTCGACATCTTTGGCAGAAGCTTTGAATACTGTGAAAACGTTTTAACATTCCATTTCA
TTGGTGTGTTGTTGTTGCTGTTGTTGTTTTTAAACTGCATTGTTACCCGATGTTTTGATG
TTATCACTTATGTGAATAGTAATTCCTGTACGTGTTCATTTTATTTTCATGCTTTTCCTG
CCATGTATCAATATTCACTCGACTAAAATTGCTCAATTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAAGTACGCTACTCTCCTATTGTCAACTGAAATTCAGAGCAGTTTCATGAGTGCCTG
GATCTGGGTCTCCATTTTCATTGATTAACTCAAAGAGTTCTGTGCCCATTTGTATCCATT
TGTTTGCACAGAGCCTGTCCTGAAAGGAGGCCTCTGTCCAGGGTAAGGTGGTCTAGGGAG
CAGGGCTTGTGTGGGGCGGAGCAATCAGCACAGAGAGGTTACAAATGAAAGAGGTGGCTG
GGCTGTGCAGCTCTCTAAGTGGACCTCTCAGGCGGGAAGAAGCGGTGAGGTCAGAGAGTT
CAAAACCCAGTGAAAATGTGCATTGTGGCTGCAGGTTTTGCCCCAACCACAGGGGCTCGG
GCCCGGGGTTCACTGTGGCCTGGGATCAGCCTTGTCTGCAACACATTAGCCCTTTCAGGG
CAGAGGGAGGCCCTGGGCCCAAAGCTGCGTTTTTCTCACCCACCTTTGTTTTTCTCAACG
AAAGACAGAACAAAAACAATGTGCAGACTCGTTGGCTTGATCATTGATTTGCAGAAGGGG
TGGTCTGTGTGTGCTTGTAGTTATGGTTGGGGCAAAGGTCCTTTTTGTAAAGGTTTAACC
TAGTCCTTCTGGGTGGCATCCCGTGAGGTCATGGGCAGAACTCCGCCAAATCTTTGAAGA
CTATTAGTAGTTATCTTAGAAGATCCGGAGTTCAGTGTTCCAAGAACACTTTATTTTTAG
AGCATCTTGGCTCCCGGTGCTGTGGATTCGGGCTCCCTGAGGCGGAAGCCAATCAGAGCT
CCAGTTTGCACTGGGATCTCTAAATTACAGAAACGCCATTGCCCAAGCCTAGCATCTGTT
TTTTGCATCAGACACCAAGTGAGAGCAGCTCTGCTGTGACTCCGGAGCTGTTTTGGACTC
AGAGGCCCCATCTCAGAAGCACACCTTAGGTAACTTGGTCCTTCTGACTTTTTCACCAGC
AGATACATAGGAGGCAGATGAAATGCTGGTTTCTTCTAGTTCCTTCCGTAGCACCCCTCT
TAGTCGACATCTTTGGCAGAAGCTTTGAATACTGTGAAAACGTTTTAACATTCCATTTCA
TTGGTGTGTTGTTGTTGCTGTTGTTGTTTTTAAACTGCATTGTTACCCGATGTTTTGATG
TTATCACTTATGTGAATAGTAATTCCTGTACGTGTTCATTTTATTTTCATGCTTTTCCTG
CCATGTATCAATATTCACTCGACTAAAATTGCTCAATTAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q16861_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q16861_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1240, gnl|bosTau2|chr27 (22410808-22412000)
               

               
               1-1240, gnl|Hg17|chr8 (41239933-41238642)
               

               
               1-1240, gnl|Mm7|chr8 (22233657-22234946)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1240, gnl|bosTau2|chr27 (22410808-22412000)
               

               
               1-1240, gnl|Hg17|chr8 (41239933-41238642)
               

               
               1-1240, gnl|Mm7|chr8 (22233657-22234946)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               amn (0.835422)
               

               
               jca (0.45584)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               jca (0.45584)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	1-1240, gnl\|bosTau2\|chr27 (22410808-22412000)
	1-1240, gnl\|Hg17\|chr8 (41239933-41238642)
	1-1240, gnl\|Mm7\|chr8 (22233657-22234946)

	amn (0.835422)
	jca (0.45584)
	cga (0.279096)
	che (0.272628)
	nmm (0.265604)
	ova (0.258264)
	ecc (0.23007)
	fli (0.202881)
	rec (0.17307)
	cut (0.169924)
	nco (0.161734)
	fat (0.147427)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	cov (0.132153)
	eep (0.122564)
	pgl (0.118483)
	spc (0.113366)