Non-Coding RNA Search

Ss1.1-Utr1-UTR010079A10.5.5

Sequence:


               
               GTGCTGACGCTCTCTTCCGGCCTTCGTGGCCCCCTGAAGGGTTTGTGGGGTGCGCACGAT
GAGGCTGCTGGCATTCGTGGTGTTGACTCTCTTTGCTGTCACTCAAGCAGAAGAAGGAGC
CAGGCTTTTGGCCTCCAAATCACTGCTGAACAGATATGCTGTGGAGGGGCGAGACTTGAC
CTTACAGTACAACATCTACAATGTTGGCTCAAGTGCTGCATTAGATGTGGAACTCTCTGA
TGATTCTTTCCCTCCAGAAGACTTTGGCATTGTCTCTGGAATGCTCAATGTCAAATGGGA
CCGGATTGCTCCTGCTAGCAATGTGTCCCACACCGTGGTCCTGCGCCCTCTCAAGGCTGG
TTATTTCAACTTCACCTCAGCAACTATTACTTACCTGGCCCAGGAGGATGGGCCTGTTGT
GATTGGCTTCACCAGTGCACCTGGACAGGGGGGAATCCTGGCTCAGCGGGAGTTTGATAG
GAGATTCTCCCCCCATTTTCTGGACTGGGCAGCCTTCGGAGTCATGACCCTCCCTTCCAT
CGGCATCCCCCTGCTGTTGTGGTACTCCAGCAAGAGGAAATATGACACCCCCAAAACCAA
GAAGAACTGAGTGGGGCTTCCGCAGCCCTCCCGTCCCAAGAAATCCAGGTGCTTTCCAGA
CTCCAAAGGGTATCTCAAATGCAACCTGTTCTCCCTTAGTCCTTGGCCACCTTCTCCTGG
ATTCTGCCCTGCTCCCAGCCAGAGTGAAGGCCCAGGCCTAGGAGTCTATGAGAGCCTCCT
TGGTTCCATCGTGAAGCCCCACAAACAGGAATGCTATCGGCAACAGCCTTGAGCCTAGAG
GTCCTGCGGTGCACCACTGACTGAGGTGCTGTGGGGTATGTTGCTGGTGATATGAACTCT
CAGAGGTCCAGGAGGGGGCGCTTCTGAGCCTGCCTGACACCACCGCATCCCCCCATCCTC
CTCTTTCAGAAAAGAGTGGAAGATCAGATGAAAGCTGTGGGGGCTCTTGGAGGTTACCCA
GTGTCTCTGCTGGCTTAGGGAAGCTCTTACCAAACGGGGTTTTCTAATAAAAACAAATGC
CACCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTGACGCTCTCTTCCGGCCTTCGTGGCCCCCTGAAGGGTTTGTGGGGTGCGCACGAT
GAGGCTGCTGGCATTCGTGGTGTTGACTCTCTTTGCTGTCACTCAAGCAGAAGAAGGAGC
CAGGCTTTTGGCCTCCAAATCACTGCTGAACAGATATGCTGTGGAGGGGCGAGACTTGAC
CTTACAGTACAACATCTACAATGTTGGCTCAAGTGCTGCATTAGATGTGGAACTCTCTGA
TGATTCTTTCCCTCCAGAAGACTTTGGCATTGTCTCTGGAATGCTCAATGTCAAATGGGA
CCGGATTGCTCCTGCTAGCAATGTGTCCCACACCGTGGTCCTGCGCCCTCTCAAGGCTGG
TTATTTCAACTTCACCTCAGCAACTATTACTTACCTGGCCCAGGAGGATGGGCCTGTTGT
GATTGGCTTCACCAGTGCACCTGGACAGGGGGGAATCCTGGCTCAGCGGGAGTTTGATAG
GAGATTCTCCCCCCATTTTCTGGACTGGGCAGCCTTCGGAGTCATGACCCTCCCTTCCAT
CGGCATCCCCCTGCTGTTGTGGTACTCCAGCAAGAGGAAATATGACACCCCCAAAACCAA
GAAGAACTGAGTGGGGCTTCCGCAGCCCTCCCGTCCCAAGAAATCCAGGTGCTTTCCAGA
CTCCAAAGGGTATCTCAAATGCAACCTGTTCTCCCTTAGTCCTTGGCCACCTTCTCCTGG
ATTCTGCCCTGCTCCCAGCCAGAGTGAAGGCCCAGGCCTAGGAGTCTATGAGAGCCTCCT
TGGTTCCATCGTGAAGCCCCACAAACAGGAATGCTATCGGCAACAGCCTTGAGCCTAGAG
GTCCTGCGGTGCACCACTGACTGAGGTGCTGTGGGGTATGTTGCTGGTGATATGAACTCT
CAGAGGTCCAGGAGGGGGCGCTTCTGAGCCTGCCTGACACCACCGCATCCCCCCATCCTC
CTCTTTCAGAAAAGAGTGGAAGATCAGATGAAAGCTGTGGGGGCTCTTGGAGGTTACCCA
GTGTCTCTGCTGGCTTAGGGAAGCTCTTACCAAACGGGGTTTTCTAATAAAAACAAATGC
CACCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               SSRB_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SSRB_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               620-717, - strand, RNAz p=0.535582
               

               
               994-1120, - strand, RNAz p=0.99919

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-717, - strand, RNAz p=0.535582
               

               
               994-1120, - strand, RNAz p=0.99919

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-1120, gnl|bosTau2|chr16 (13483135-13482071)
               

               
               50-1120, gnl|Hg17|chr1 (152803030-152791917)
               

               
               50-1120, gnl|Mm7|chr3 (88693682-88702215)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-1120, gnl|bosTau2|chr16 (13483135-13482071)
               

               
               50-1120, gnl|Hg17|chr1 (152803030-152791917)
               

               
               50-1120, gnl|Mm7|chr3 (88693682-88702215)

Expressed library(ies): 54 entry(ies)

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Expressed library(ies): 54 entry(ies)

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               cag (1.20956)
               

               
               eru (1.20048)
               

               
               fhi (1.18704)
               

               
               nlu (1.15009)
               

               
               nmm (1.06242)
               

               
               cov (1.05722)
               

               
               eje (0.988338)
               

               
               cly (0.965135)
               

               
               nca (0.958117)
               

               
               eep (0.857948)
               

               
               clu (0.837521)
               

               
               nje (0.8296)
               

               
               col (0.780031)
               

               
               lnt (0.711541)
               

               
               ecc (0.690211)
               

               
               jca (0.683761)
               

               
               mcp (0.682594)
               

               
               csp (0.644745)
               

               
               cli (0.611247)
               

               
               nbm (0.595948)
               

               
               jej (0.593531)
               

               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               nco (0.485201)
               

               
               pty (0.428143)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               eli (0.303628)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (1.20956)
               

               
               eru (1.20048)
               

               
               fhi (1.18704)
               

               
               nlu (1.15009)
               

               
               nmm (1.06242)
               

               
               cov (1.05722)
               

               
               eje (0.988338)
               

               
               cly (0.965135)
               

               
               nca (0.958117)
               

               
               eep (0.857948)
               

               
               clu (0.837521)
               

               
               nje (0.8296)
               

               
               col (0.780031)
               

               
               lnt (0.711541)
               

               
               ecc (0.690211)
               

               
               jca (0.683761)
               

               
               mcp (0.682594)
               

               
               csp (0.644745)
               

               
               cli (0.611247)
               

               
               nbm (0.595948)
               

               
               jej (0.593531)
               

               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               nco (0.485201)
               

               
               pty (0.428143)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               eli (0.303628)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	620-717, - strand, RNAz p=0.535582
	994-1120, - strand, RNAz p=0.99919

	50-1120, gnl\|bosTau2\|chr16 (13483135-13482071)
	50-1120, gnl\|Hg17\|chr1 (152803030-152791917)
	50-1120, gnl\|Mm7\|chr3 (88693682-88702215)

	cag (1.20956)
	eru (1.20048)
	fhi (1.18704)
	nlu (1.15009)
	nmm (1.06242)
	cov (1.05722)
	eje (0.988338)
	cly (0.965135)
	nca (0.958117)
	eep (0.857948)
	clu (0.837521)
	nje (0.8296)
	col (0.780031)
	lnt (0.711541)
	ecc (0.690211)
	jca (0.683761)
	mcp (0.682594)
	csp (0.644745)
	cli (0.611247)
	nbm (0.595948)
	jej (0.593531)
	fcc (0.593354)
	fce (0.543183)
	ill (0.526778)
	ton (0.526501)
	duo (0.518403)
	pro (0.512033)
	nco (0.485201)
	pty (0.428143)
	hlv (0.417769)
	amn (0.417711)
	ute (0.398353)
	fty (0.351679)
	med (0.348756)
	eli (0.303628)
	cga (0.279096)
	ese (0.253004)
	ebs (0.236602)
	nms (0.213858)
	cty (0.20816)
	nep (0.183925)
	sto (0.179824)
	fbs (0.175346)
	eye (0.170503)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)