Non-Coding RNA Search

Ss1.1-Utr1-UTR010079G04.5

Sequence:


               
               AACTGCGGTGGGGCCGCCCCGGCTGGCAGCGCGGGACACGTCAAACTGGAGGAAAGTGCA
GATAACATACTCTCCATTGTTAAACAAAGAACAGGATCTTTTGGGGATCGACCTGCAAGA
CCTACTCTTTTAGAGCAAGTGTTAAATCAAAAAAGACTGTCATTACTAAGAAGTCCAGAG
GTGGTGCAGTTTTTACAGAAACAGCAACAACTATTAAATCAGCAAGTTTTGGAGCAAAGA
CAACAGCAGATTCCAGGAACATCAGTATGAGGGAATTTATCGGGAAGATCTACGAGTTTT
TTTATTTTATTGTACTGGATGGACATATTTTTATACAAAAGATAAATGGCAAGATATTTC
AGTAGAAGGTAAACAGTCATTTTCCTATGAAAGTATGTGTGCATTTGGGGACAAATAAGT
ATTGCACGTTGTGCACCTAACCCTTTCAGATCACCATGGATTTGAAGAAATCAGCTTATC
TTTCCAAAGTAATATTTAATTGCAATGTTTTTTTAAACAAAGTGTTCCTCTTCAGTCGTT
GTTACTGAAGGCAGTGAAGCAGTTGCTTTCTGTGGAAGTCACGAAGTTAATAGATACTAA
TCTTGAATCGTCTAGCTCAGTGGTTCTCGTCAAGGGGCAGTTGGAAATGTGTGTTTTTGC
CTGTCACAGTGACCTTGAAAATTGCTGGGTTTTATTGAGTGGTCCCCCACAACTAAGCAT
TATTTCACACTCAGCACCAATAATGCTTCTCTTAAGAAACACTGAGAGCTACCTGTGATG
ATAAAATGCAGTTGGGGCACCTAGAATTGGGTTCTCATAGTACCCTTTTCTTTGCAGTTA
AGACTGGAGTTGTCAAAGAGGTAAGCAGGAGTTCCCTTTGTGGCTCAGAGGGTTACAAAC
CTGACTAGTAGCCAGGAAGATATGGGTTCAACCCTGGCCTTGCTCAGTGGGTTAAGGATC
CAGCACTGCCATGAGCTGTGGTGTAGGTCACAGACGTGGCTCAGGTCCAGCATTGCTGAG
GCTTTGGCTGGCAGCTACAGCTCTTATTTGACCCCATATGCCACAGGTGCAGCCCTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGCGGTGGGGCCGCCCCGGCTGGCAGCGCGGGACACGTCAAACTGGAGGAAAGTGCA
GATAACATACTCTCCATTGTTAAACAAAGAACAGGATCTTTTGGGGATCGACCTGCAAGA
CCTACTCTTTTAGAGCAAGTGTTAAATCAAAAAAGACTGTCATTACTAAGAAGTCCAGAG
GTGGTGCAGTTTTTACAGAAACAGCAACAACTATTAAATCAGCAAGTTTTGGAGCAAAGA
CAACAGCAGATTCCAGGAACATCAGTATGAGGGAATTTATCGGGAAGATCTACGAGTTTT
TTTATTTTATTGTACTGGATGGACATATTTTTATACAAAAGATAAATGGCAAGATATTTC
AGTAGAAGGTAAACAGTCATTTTCCTATGAAAGTATGTGTGCATTTGGGGACAAATAAGT
ATTGCACGTTGTGCACCTAACCCTTTCAGATCACCATGGATTTGAAGAAATCAGCTTATC
TTTCCAAAGTAATATTTAATTGCAATGTTTTTTTAAACAAAGTGTTCCTCTTCAGTCGTT
GTTACTGAAGGCAGTGAAGCAGTTGCTTTCTGTGGAAGTCACGAAGTTAATAGATACTAA
TCTTGAATCGTCTAGCTCAGTGGTTCTCGTCAAGGGGCAGTTGGAAATGTGTGTTTTTGC
CTGTCACAGTGACCTTGAAAATTGCTGGGTTTTATTGAGTGGTCCCCCACAACTAAGCAT
TATTTCACACTCAGCACCAATAATGCTTCTCTTAAGAAACACTGAGAGCTACCTGTGATG
ATAAAATGCAGTTGGGGCACCTAGAATTGGGTTCTCATAGTACCCTTTTCTTTGCAGTTA
AGACTGGAGTTGTCAAAGAGGTAAGCAGGAGTTCCCTTTGTGGCTCAGAGGGTTACAAAC
CTGACTAGTAGCCAGGAAGATATGGGTTCAACCCTGGCCTTGCTCAGTGGGTTAAGGATC
CAGCACTGCCATGAGCTGTGGTGTAGGTCACAGACGTGGCTCAGGTCCAGCATTGCTGAG
GCTTTGGCTGGCAGCTACAGCTCTTATTTGACCCCATATGCCACAGGTGCAGCCCTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839873|ref|XP_612997.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839873|ref|XP_612997.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               700-817, - strand, RNAz p=0.998186

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               700-817, - strand, RNAz p=0.998186

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               159-639, gnl|bosTau2|chr11 (79693380-79692897)
               

               
               159-639, gnl|Hg17|chr13 (36299779-36300257)
               

               
               159-639, gnl|Mm7|chr3 (54933785-54933241)
               


               
               700-867, gnl|bosTau2|chr11 (79692773-79692606)
               

               
               700-867, gnl|Hg17|chr13 (36300339-36300502)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-639, gnl|bosTau2|chr11 (79693380-79692897)
               

               
               159-639, gnl|Hg17|chr13 (36299779-36300257)
               

               
               159-639, gnl|Mm7|chr3 (54933785-54933241)
               


               
               700-867, gnl|bosTau2|chr11 (79692773-79692606)
               

               
               700-867, gnl|Hg17|chr13 (36300339-36300502)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               cut (0.169924)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	159-639, gnl\|bosTau2\|chr11 (79693380-79692897)
	159-639, gnl\|Hg17\|chr13 (36299779-36300257)
	159-639, gnl\|Mm7\|chr3 (54933785-54933241)

	700-867, gnl\|bosTau2\|chr11 (79692773-79692606)
	700-867, gnl\|Hg17\|chr13 (36300339-36300502)