Ss1.1-Utr1-UTR010080A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACACTGGCCGCCATGGTCTCAGACGGTGAGGGCTGCGCTGGCGGGACCCGGACCCCTG GGCTGGGCAGAGTTTGCCCGGCCAGCATCAACCAAATGGAGTTTATCTTAGGGGCTGGGT GGAACCTGTTTGATCTTTAGAGAAGTAGCGAATGCATTCATTCATTTAGTAAATATTTTT GGAGCGCCTCTTGTATTCCAGGCGTTTCTTTATGCTCTGGGGTCGTAGCAGTTGTCCATG CATCCTTCAAGTGTTTTAATCAGTATAACAATCTTGTGAGGGAGGCCGACCTGGTGTGGT CTCTGTCTACAAATAAGGAGGTGGATACCCAAAGAAAGAAATTCACAGGGACATTCCATG TGTATAGCTACACATCTCTCCTGAACGAAGATGAATTGAATCTTCTAGTAATCATAGTTG ATACCAACCCAATTTGGTGGGGAAAGCAAGCATTAAAAGAATCTCAGTTTACTTTATCAA AATGCATAGATGCAGTGATGGTGCTAGGAAATTCTCATTTATTCATGAATCGCTCCAACA AACTTGCTGTCATAGCAAGTCACATTCAAGAAAGTCGATTCTTATATCCTGGAAAGAATG GCAGACTTGGAGACTTCTTTGGAGACCCTGGCAACCCTTCTTCTGAATTTAATCCCTCAG GAAGTAAAGATGGAAAATACGAGTTGTTGACAGCAGCAAATGATGTTATTGCTGAAGAGA TCAAAGATCTAATGACCAAGAGTGACATAGAGGGTCAACATACAGAAACTCTGCTGGCGG GATCCCTCGCCAAAGCTCTCTGCTACATTCATAGAATGAACAAGGAGGTTAAAGATAATC AGGAAATGAAATCAAGGATATTGGTGATTAAAGCTGCAGAAGACAGTGCGTTGCAGTATA TGAACTTCATGAATGTCATCTTTGCAGCACAGAAGCAGAATATTTTGATTGATGCCTGCG TTTTAGACTCCGATTCAGGACTTCTGCAACAGGCTTGTGATATCACGGGGGGACTGTACT TGAAGGTGCCTCAGATGCCCTCCCTCTTGCAGTATTTACTGTGGGTTTTTCTTCCTGATC AGGATCAGAGATCTCAGTTAATCCTCCCACCCCCGATTCATGTTGACTATCGGGCTGCTT GCTTTGGTCATCGAAATCTCATTGAAATGGGCTACGTCTGTTCTGTGTGCTTGTCAATAT TCTGCAATTTCAGCCCTATCTGCACTACATGCGAGACAGCCTTTAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACACTGGCCGCCATGGTCTCAGACGGTGAGGGCTGCGCTGGCGGGACCCGGACCCCTG GGCTGGGCAGAGTTTGCCCGGCCAGCATCAACCAAATGGAGTTTATCTTAGGGGCTGGGT GGAACCTGTTTGATCTTTAGAGAAGTAGCGAATGCATTCATTCATTTAGTAAATATTTTT GGAGCGCCTCTTGTATTCCAGGCGTTTCTTTATGCTCTGGGGTCGTAGCAGTTGTCCATG CATCCTTCAAGTGTTTTAATCAGTATAACAATCTTGTGAGGGAGGCCGACCTGGTGTGGT CTCTGTCTACAAATAAGGAGGTGGATACCCAAAGAAAGAAATTCACAGGGACATTCCATG TGTATAGCTACACATCTCTCCTGAACGAAGATGAATTGAATCTTCTAGTAATCATAGTTG ATACCAACCCAATTTGGTGGGGAAAGCAAGCATTAAAAGAATCTCAGTTTACTTTATCAA AATGCATAGATGCAGTGATGGTGCTAGGAAATTCTCATTTATTCATGAATCGCTCCAACA AACTTGCTGTCATAGCAAGTCACATTCAAGAAAGTCGATTCTTATATCCTGGAAAGAATG GCAGACTTGGAGACTTCTTTGGAGACCCTGGCAACCCTTCTTCTGAATTTAATCCCTCAG GAAGTAAAGATGGAAAATACGAGTTGTTGACAGCAGCAAATGATGTTATTGCTGAAGAGA TCAAAGATCTAATGACCAAGAGTGACATAGAGGGTCAACATACAGAAACTCTGCTGGCGG GATCCCTCGCCAAAGCTCTCTGCTACATTCATAGAATGAACAAGGAGGTTAAAGATAATC AGGAAATGAAATCAAGGATATTGGTGATTAAAGCTGCAGAAGACAGTGCGTTGCAGTATA TGAACTTCATGAATGTCATCTTTGCAGCACAGAAGCAGAATATTTTGATTGATGCCTGCG TTTTAGACTCCGATTCAGGACTTCTGCAACAGGCTTGTGATATCACGGGGGGACTGTACT TGAAGGTGCCTCAGATGCCCTCCCTCTTGCAGTATTTACTGTGGGTTTTTCTTCCTGATC AGGATCAGAGATCTCAGTTAATCCTCCCACCCCCGATTCATGTTGACTATCGGGCTGCTT GCTTTGGTCATCGAAATCTCATTGAAATGGGCTACGTCTGTTCTGTGTGCTTGTCAATAT TCTGCAATTTCAGCCCTATCTGCACTACATGCGAGACAGCCTTTAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-158, + strand, RNAz p=0.727711 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-158, + strand, RNAz p=0.727711 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-221, gnl|bosTau2|chr17 (26601136-26601364) | |
| 1-221, gnl|Hg17|chr12 (122643273-122643491) | |
| 558-859, gnl|bosTau2|chr21 (32877161-32876860) | |
| 558-859, gnl|Hg17|chr14 (38144359-38144703) | |
| 558-859, gnl|Mm7|chr12 (56512481-56513494) | |
| 573-743, gnl|bosTau2|chr17 (26609453-26609623) | |
| 573-743, gnl|Hg17|chr12 (122657388-122657555) | |
| 573-743, gnl|Mm7|chr5 (123829997-123830167) | |
| 1016-1246, gnl|bosTau2|chr21 (32876815-32876595) | |
| 1016-1246, gnl|Hg17|chr14 (38144769-38145004) | |
| 1016-1246, gnl|Mm7|chr12 (56513558-56513799) | |
| 1061-1197, gnl|bosTau2|chr17 (26620301-26620437) | |
| 1061-1197, gnl|canFam2|chr26 (9003138-9002973) | |
| 1061-1197, gnl|danRer3|chrUn (71208051-71208223) | |
| 1061-1197, gnl|dasNov1|scaffold_51525 (43713-43543) | |
| 1061-1197, gnl|echTel1|scaffold_17911 (2049-1922) | |
| 1061-1197, gnl|fr1|chrUn (48587958-48587799) | |
| 1061-1197, gnl|galGal2|chr15 (4903474-4903311) | |
| 1061-1197, gnl|hg17|chr12 (122669210-122669380) | |
| 1061-1197, gnl|Hg17|chr12 (122669221-122669357) | |
| 1061-1197, gnl|loxAfr1|scaffold_33783 (7587-7422) | |
| 1061-1197, gnl|mm7|chr5 (123841403-123841572) | |
| 1061-1197, gnl|Mm7|chr5 (123841415-123841551) | |
| 1061-1197, gnl|monDom2|scaffold_97 (4143558-4143724) | |
| 1061-1197, gnl|oryCun1|scaffold_214808 (55723-55563) | |
| 1061-1197, gnl|panTro1|chr10 (125722429-125722599) | |
| 1061-1197, gnl|rheMac2|chr7 (101594203-101594337) | |
| 1061-1197, gnl|rn3|chr12 (32986609-32986438) | |
| 1061-1197, gnl|tetNig1|chr12 (7057059-7056892) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-221, gnl|bosTau2|chr17 (26601136-26601364) | |
| 1-221, gnl|Hg17|chr12 (122643273-122643491) | |
| 558-859, gnl|bosTau2|chr21 (32877161-32876860) | |
| 558-859, gnl|Hg17|chr14 (38144359-38144703) | |
| 558-859, gnl|Mm7|chr12 (56512481-56513494) | |
| 573-743, gnl|bosTau2|chr17 (26609453-26609623) | |
| 573-743, gnl|Hg17|chr12 (122657388-122657555) | |
| 573-743, gnl|Mm7|chr5 (123829997-123830167) | |
| 1016-1246, gnl|bosTau2|chr21 (32876815-32876595) | |
| 1016-1246, gnl|Hg17|chr14 (38144769-38145004) | |
| 1016-1246, gnl|Mm7|chr12 (56513558-56513799) | |
| 1061-1197, gnl|bosTau2|chr17 (26620301-26620437) | |
| 1061-1197, gnl|canFam2|chr26 (9003138-9002973) | |
| 1061-1197, gnl|danRer3|chrUn (71208051-71208223) | |
| 1061-1197, gnl|dasNov1|scaffold_51525 (43713-43543) | |
| 1061-1197, gnl|echTel1|scaffold_17911 (2049-1922) | |
| 1061-1197, gnl|fr1|chrUn (48587958-48587799) | |
| 1061-1197, gnl|galGal2|chr15 (4903474-4903311) | |
| 1061-1197, gnl|hg17|chr12 (122669210-122669380) | |
| 1061-1197, gnl|Hg17|chr12 (122669221-122669357) | |
| 1061-1197, gnl|loxAfr1|scaffold_33783 (7587-7422) | |
| 1061-1197, gnl|mm7|chr5 (123841403-123841572) | |
| 1061-1197, gnl|Mm7|chr5 (123841415-123841551) | |
| 1061-1197, gnl|monDom2|scaffold_97 (4143558-4143724) | |
| 1061-1197, gnl|oryCun1|scaffold_214808 (55723-55563) | |
| 1061-1197, gnl|panTro1|chr10 (125722429-125722599) | |
| 1061-1197, gnl|rheMac2|chr7 (101594203-101594337) | |
| 1061-1197, gnl|rn3|chr12 (32986609-32986438) | |
| 1061-1197, gnl|tetNig1|chr12 (7057059-7056892) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| mas (0.210305) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| bfe (0.149858) | |
| ova (0.129132) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| bfe (0.149858) | |
| ova (0.129132) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) |