Non-Coding RNA Search

Ss1.1-Utr1-UTR010080C10.5

Sequence:


               
               ACGCCGGGACGTCGGTGCGGCGGGAGGAGCGGGAGACACTGCAGGCGGGAGGCGACAGGA
TGGTGAAGCTGACGGCGGAGCTGATCGAGCAGGCGGCGCAATACACCAACGCCGTGCGGG
ACCGCGAGCTGGACTTGCGAGGGTACAAAATTCCTGTCATTGAAAATCTAGGTGCTACCT
TAGACCAATTTGATGCCATTGATTTTTCTGACAATGAAATCAGGAAACTAGATGGTTTTC
CTTTGCTGAGAAGACTGAAAACATTGTTAGTGAACAACAATAGAATATGCCGTATAGGTG
AGGGACTTGATCAGGCTCTGCCCTGTCTGACAGAACTCATTCTCACCAACAATAGTCTTG
TGGAATTGGGTGATCTGGACCCTTTGGCATCTCTCAAATCACTGACTTATCTAAGTATTC
TAAGAAATCCTGTAACAAATAAGAAACATTACAGACTATATGTTATTTATAAAGTCCCAC
AAGTCAGAGTACTGGATTTCCAGAAGGTGAAACTAAAAGAGCGTCAGGAAGCAGAGAAAA
TGTTCAAGGGCAAACGGGGTGCACAACTTGCAAAGGATATTGCCAGGAGAAGCAAAACTT
TCAATCCAGGTGCTGGTTTGCCAGCTGACAAAAAGAAGGGTGGGCCATCTCCAGGGGATG
TGGAAGCCATCAAGAATGCTATAGCAAACGCATCAACTTTGGCTGAAGTGGAGCGACTAA
AGGGCTTGCTGCAGTCCGGTCAGATACCTGGCAGAGAACGCAGATCAGGCCCCACTGATG
ATGGCGAAGAGGAGATGGAAGAAGACACTGTCACAAATGGGTCCTGAGCAGTGTGGCCTC
TGAAGATTTACAGGATAGTCCACTTGGGGCACGTCCTTCTTTTTACATAGTAGCCTTGTT
TATGTCAGCAAAGTAGAGTTCATAAGCGTTGTTGAAATGCTTAAAACTGCTGCTGGTAAT
TTTGTAATATAAATTTTGAAATCTAAATGCCAGTTTTTTACTAATAGTGCAAATAAAGGA
CACTCACTGTGCAAAAAAAAAAAAGTCATTGGGGTACGTGTGCAGGGAGGTGTGTGGAAA
CGCAGGAGGGCAGCTCTTCTAGGTAGGCTTCCCAGTCCTCCTGAAATGTTTAGGTTTCTT
TTAATTCTTAATAAAACTTAGCGTTATCTGTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCCGGGACGTCGGTGCGGCGGGAGGAGCGGGAGACACTGCAGGCGGGAGGCGACAGGA
TGGTGAAGCTGACGGCGGAGCTGATCGAGCAGGCGGCGCAATACACCAACGCCGTGCGGG
ACCGCGAGCTGGACTTGCGAGGGTACAAAATTCCTGTCATTGAAAATCTAGGTGCTACCT
TAGACCAATTTGATGCCATTGATTTTTCTGACAATGAAATCAGGAAACTAGATGGTTTTC
CTTTGCTGAGAAGACTGAAAACATTGTTAGTGAACAACAATAGAATATGCCGTATAGGTG
AGGGACTTGATCAGGCTCTGCCCTGTCTGACAGAACTCATTCTCACCAACAATAGTCTTG
TGGAATTGGGTGATCTGGACCCTTTGGCATCTCTCAAATCACTGACTTATCTAAGTATTC
TAAGAAATCCTGTAACAAATAAGAAACATTACAGACTATATGTTATTTATAAAGTCCCAC
AAGTCAGAGTACTGGATTTCCAGAAGGTGAAACTAAAAGAGCGTCAGGAAGCAGAGAAAA
TGTTCAAGGGCAAACGGGGTGCACAACTTGCAAAGGATATTGCCAGGAGAAGCAAAACTT
TCAATCCAGGTGCTGGTTTGCCAGCTGACAAAAAGAAGGGTGGGCCATCTCCAGGGGATG
TGGAAGCCATCAAGAATGCTATAGCAAACGCATCAACTTTGGCTGAAGTGGAGCGACTAA
AGGGCTTGCTGCAGTCCGGTCAGATACCTGGCAGAGAACGCAGATCAGGCCCCACTGATG
ATGGCGAAGAGGAGATGGAAGAAGACACTGTCACAAATGGGTCCTGAGCAGTGTGGCCTC
TGAAGATTTACAGGATAGTCCACTTGGGGCACGTCCTTCTTTTTACATAGTAGCCTTGTT
TATGTCAGCAAAGTAGAGTTCATAAGCGTTGTTGAAATGCTTAAAACTGCTGCTGGTAAT
TTTGTAATATAAATTTTGAAATCTAAATGCCAGTTTTTTACTAATAGTGCAAATAAAGGA
CACTCACTGTGCAAAAAAAAAAAAGTCATTGGGGTACGTGTGCAGGGAGGTGTGTGGAAA
CGCAGGAGGGCAGCTCTTCTAGGTAGGCTTCCCAGTCCTCCTGAAATGTTTAGGTTTCTT
TTAATTCTTAATAAAACTTAGCGTTATCTGTGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3659936|pdb|1A9N|C

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3659936|pdb|1A9N|C

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               298-417, - strand, RNAz p=0.597044

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-417, - strand, RNAz p=0.597044

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-1176, gnl|bosTau2|chr6 (16529894-16531028)
               

               
               28-1176, gnl|Hg17|chr2 (114131695-114132693)
               

               
               28-1176, gnl|Mm7|chr7 (61918555-61932666)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-1176, gnl|bosTau2|chr6 (16529894-16531028)
               

               
               28-1176, gnl|Hg17|chr2 (114131695-114132693)
               

               
               28-1176, gnl|Mm7|chr7 (61918555-61932666)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               hea (0.408998)
               

               
               nca (0.273748)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               nca (0.273748)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	28-1176, gnl\|bosTau2\|chr6 (16529894-16531028)
	28-1176, gnl\|Hg17\|chr2 (114131695-114132693)
	28-1176, gnl\|Mm7\|chr7 (61918555-61932666)

	hea (0.408998)
	nca (0.273748)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	cki (0.165235)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	nmm (0.132802)
	ova (0.129132)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)