Ss1.1-Utr1-UTR010080G10.5
|
CTGAGGCTGTCCCAGAGCCCCTGGCCTTGTCTGAGCCAGAGCATGTTACCATTCCTGTGC
CAGTTGTTTCTGCCCTGGAGCCTACTGTGCCTATCCTGGAACCAGCGGTGTCCGTCCTTC
AACCTAACTTGATCGTTTCAGAACCATCTATTTCTGTCCAAGACCCCACTGTGACAATTT
CAGAGCCTCCTGTCACTGTTTCAGAGCAGACACAAGTAATACCAACTGAGATGGTTTTAG
AGTCTACACCAGTAATCCTGGAGTCTAGTGCTACGAAAGGAATGAATTTACTATCTGGTG
ATCAAAATCTTGCTCCAGAGATGGGCATGCAGGAGATTCCCATGCATTCAGAGGAAGAGC
CACATGCCGAAGGACACCTGAAGAATGACTGTTATGAAACTGAAAATGGTATGAGTACAG
ACCTTAATATAAATAATCACTTAATTGCTAAAGAGATGGAACATAACACAGTGTCCGCTG
CCAGCATTGGTGCTGTTGGTGAAATGGGTGAAGAGAAAATTTTGCCCACCCATGAGACTA
AACAATGCACAGTATTGGATACCTGCTCTAGTGTTAGTGAAACTGATGTAGGAGGAACTC
TGTCTTCTACTGGTCCCCTTGCTCTTGAACCTGATGCAGTGGGAGCTGGTAAGGGTATTG
AATTTGCCACAGCATCTGCTCTCAGTTCAATTAGTAAATATGATGTTGAAGGAGCTTTAA
CTACTCAAGATACTGAACATGATATGGTAATTTCTACCAGCCCCAGTGGTGGTAGTGAAG
CTGACATAGAGGGACCTTTGCTTGCTAAAGACATTCATCTTGACTTATCATCTAATAGTA
ACTTTATTAGTAAGGATGCAGAGGAATCATTACCTATACAGGAAAGTGACCAGACATTAG
CAGTTGCTCTTAGTCCTAAAGAAACTAGTGGAGAAGATAAAGAAGTACCTCTCCCTGCTA
CAGAGGCAGTGTCTGATACAGGATTTCCTGCCAATATTGACGACATTAATGAAGCTGATT
TAGTGCGACCATTACTTCCTAAGGACATGGAACGTCTTACCAGCCTTAGAGCTGGTATTG
AAGGACCTTTACTTTCAAGTGAAGTTGAGCGGGATAAATCTGCTGCCAGTCCAGTTGTAA
TTAGCATACCAGAAAGAGCCTCAGAGTCGTCTTCAGAGGAAAAAGATGATTATGAAATTT
TTGTAAAAGTTAAGGACACACATGAAAAAAGCAAGAAAAATAAGAACCGAGACAAAGGCG
AGAAAGAGAAGAAAAGAGACTCTTCATTAAGATCTCGAAGTAAGCGTTCCAAGTCTTCTG
AACACAAATCACGAAAGCGCACCAGTGAATCTCGTTCTAGGGCAAGGAAGAGATCATCTA
AGTCCAAGTCTCTCCGCTCTCAAACTCGTTCACGGTCCCGATCAAGACGACGGAGGAGGA
GCAGCAGGTCAAGGTCAAAGTCCAGAGGAAGGCGCTCTGTGTCAAAAGAGAAGCGCAAAA
GATCTCCAAAGCACAGGTCCAAGTCCAGGGAAAGAAAAAGAAAAAGATCAAGCTCCAGGG
ATAATCGGAAAACAGGTAGAGCTCGAAGTCGCACCCCAAGTCGACGGAGCCGGAGTCACA
CTCCGAGTCGTCGAAGAAGATCTAGATCTGGGGGAAGAAGGAGCTTTAGCATTTCCCCGA
GCCGACGGAGCCGTACCCCCAGCCGACGGAGCCGCACCCCCAGCCGACGGAGCCGCACCC
CCAGCCGACGGAGCCGCACTCCCAGCCGTCGGAGCCGCACCCCAAGTCGACGGAGCCGCA
CCCCTAGCCGTCGGAGAAGATCAAGGTCTGTGGTAAGAAGACGAAGCTTCAGTATATCAC
CAGTCAGATTAAGGCGATCACGAACACCTTTGAGAAGAAGGTTTAGCAGATCTCCCATCC
GTCGTAAACGATGCAGATTTTTAGGTCTTTCGTGGTCAGTAAATTCCGGGAAATTCAACA
GGAACTTTCAAGTGGAAGGAGTGAAGGCCAGCTCAATGGTGAAACAAATACACCTATTGA
AGGAAACCAGGCAGGTGATGCAGCTGCCTCTGCCAGGACCCTACCAAATGAAGAAATAGT
TCAGAAGATAGAGGAAGTACTTTCTGGGGTCTTAGATACAGAACTGCGATATAAGCCAGA
CTTGAAGGAGGCCTCCAGAAAAAGTAGATGTGTGTCTGTACAAACAGATCCTACTGATGA
AATTCCTACCAAAAAGTCGAAGAAGCATAAAAAGCACAAAAATAAAAAGAAGAAAAAGAA
GAAAGAAAAAGAAAAAAAGTATAAAAAACAGCCGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGAGGCTGTCCCAGAGCCCCTGGCCTTGTCTGAGCCAGAGCATGTTACCATTCCTGTGC
CAGTTGTTTCTGCCCTGGAGCCTACTGTGCCTATCCTGGAACCAGCGGTGTCCGTCCTTC
AACCTAACTTGATCGTTTCAGAACCATCTATTTCTGTCCAAGACCCCACTGTGACAATTT
CAGAGCCTCCTGTCACTGTTTCAGAGCAGACACAAGTAATACCAACTGAGATGGTTTTAG
AGTCTACACCAGTAATCCTGGAGTCTAGTGCTACGAAAGGAATGAATTTACTATCTGGTG
ATCAAAATCTTGCTCCAGAGATGGGCATGCAGGAGATTCCCATGCATTCAGAGGAAGAGC
CACATGCCGAAGGACACCTGAAGAATGACTGTTATGAAACTGAAAATGGTATGAGTACAG
ACCTTAATATAAATAATCACTTAATTGCTAAAGAGATGGAACATAACACAGTGTCCGCTG
CCAGCATTGGTGCTGTTGGTGAAATGGGTGAAGAGAAAATTTTGCCCACCCATGAGACTA
AACAATGCACAGTATTGGATACCTGCTCTAGTGTTAGTGAAACTGATGTAGGAGGAACTC
TGTCTTCTACTGGTCCCCTTGCTCTTGAACCTGATGCAGTGGGAGCTGGTAAGGGTATTG
AATTTGCCACAGCATCTGCTCTCAGTTCAATTAGTAAATATGATGTTGAAGGAGCTTTAA
CTACTCAAGATACTGAACATGATATGGTAATTTCTACCAGCCCCAGTGGTGGTAGTGAAG
CTGACATAGAGGGACCTTTGCTTGCTAAAGACATTCATCTTGACTTATCATCTAATAGTA
ACTTTATTAGTAAGGATGCAGAGGAATCATTACCTATACAGGAAAGTGACCAGACATTAG
CAGTTGCTCTTAGTCCTAAAGAAACTAGTGGAGAAGATAAAGAAGTACCTCTCCCTGCTA
CAGAGGCAGTGTCTGATACAGGATTTCCTGCCAATATTGACGACATTAATGAAGCTGATT
TAGTGCGACCATTACTTCCTAAGGACATGGAACGTCTTACCAGCCTTAGAGCTGGTATTG
AAGGACCTTTACTTTCAAGTGAAGTTGAGCGGGATAAATCTGCTGCCAGTCCAGTTGTAA
TTAGCATACCAGAAAGAGCCTCAGAGTCGTCTTCAGAGGAAAAAGATGATTATGAAATTT
TTGTAAAAGTTAAGGACACACATGAAAAAAGCAAGAAAAATAAGAACCGAGACAAAGGCG
AGAAAGAGAAGAAAAGAGACTCTTCATTAAGATCTCGAAGTAAGCGTTCCAAGTCTTCTG
AACACAAATCACGAAAGCGCACCAGTGAATCTCGTTCTAGGGCAAGGAAGAGATCATCTA
AGTCCAAGTCTCTCCGCTCTCAAACTCGTTCACGGTCCCGATCAAGACGACGGAGGAGGA
GCAGCAGGTCAAGGTCAAAGTCCAGAGGAAGGCGCTCTGTGTCAAAAGAGAAGCGCAAAA
GATCTCCAAAGCACAGGTCCAAGTCCAGGGAAAGAAAAAGAAAAAGATCAAGCTCCAGGG
ATAATCGGAAAACAGGTAGAGCTCGAAGTCGCACCCCAAGTCGACGGAGCCGGAGTCACA
CTCCGAGTCGTCGAAGAAGATCTAGATCTGGGGGAAGAAGGAGCTTTAGCATTTCCCCGA
GCCGACGGAGCCGTACCCCCAGCCGACGGAGCCGCACCCCCAGCCGACGGAGCCGCACCC
CCAGCCGACGGAGCCGCACTCCCAGCCGTCGGAGCCGCACCCCAAGTCGACGGAGCCGCA
CCCCTAGCCGTCGGAGAAGATCAAGGTCTGTGGTAAGAAGACGAAGCTTCAGTATATCAC
CAGTCAGATTAAGGCGATCACGAACACCTTTGAGAAGAAGGTTTAGCAGATCTCCCATCC
GTCGTAAACGATGCAGATTTTTAGGTCTTTCGTGGTCAGTAAATTCCGGGAAATTCAACA
GGAACTTTCAAGTGGAAGGAGTGAAGGCCAGCTCAATGGTGAAACAAATACACCTATTGA
AGGAAACCAGGCAGGTGATGCAGCTGCCTCTGCCAGGACCCTACCAAATGAAGAAATAGT
TCAGAAGATAGAGGAAGTACTTTCTGGGGTCTTAGATACAGAACTGCGATATAAGCCAGA
CTTGAAGGAGGCCTCCAGAAAAAGTAGATGTGTGTCTGTACAAACAGATCCTACTGATGA
AATTCCTACCAAAAAGTCGAAGAAGCATAAAAAGCACAAAAATAAAAAGAAGAAAAAGAA
GAAAGAAAAAGAAAAAAAGTATAAAAAACAGCCGGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1658-1808, - strand, RNAmicro p=0.929597 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1658-1808, - strand, RNAmicro p=0.929597 |
|
1-1944, gnl|bosTau2|chr1 (1300401-1302338) |
|
1-1944, gnl|Hg17|chr21 (33847570-33849531) |
|
1-1944, gnl|Mm7|chr16 (91708962-91710890) |
| |
|
1988-2159, gnl|bosTau2|chr1 (1294544-1294715) |
|
1988-2159, gnl|canFam2|chr31 (31186288-31186643) |
|
1988-2159, gnl|dasNov1|scaffold_2839 (33947-34303) |
|
1988-2159, gnl|echTel1|scaffold_319055 (40877-41254) |
|
1988-2159, gnl|hg17|chr21 (33840291-33840659) |
|
1988-2159, gnl|Hg17|chr21 (33840384-33840555) |
|
1988-2159, gnl|loxAfr1|scaffold_810 (63320-62921) |
|
1988-2159, gnl|mm7|chr16 (91701859-91702211) |
|
1988-2159, gnl|Mm7|chr16 (91701971-91702142) |
|
1988-2159, gnl|monDom2|scaffold_29 (14203607-14203217) |
|
1988-2159, gnl|panTro1|chr22 (33828271-33828639) |
|
1988-2159, gnl|rheMac2|chr3 (13014167-13013795) |
|
1988-2159, gnl|rn3|chr11 (31663601-31663945) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1944, gnl|bosTau2|chr1 (1300401-1302338) |
|
1-1944, gnl|Hg17|chr21 (33847570-33849531) |
|
1-1944, gnl|Mm7|chr16 (91708962-91710890) |
| |
|
1988-2159, gnl|bosTau2|chr1 (1294544-1294715) |
|
1988-2159, gnl|canFam2|chr31 (31186288-31186643) |
|
1988-2159, gnl|dasNov1|scaffold_2839 (33947-34303) |
|
1988-2159, gnl|echTel1|scaffold_319055 (40877-41254) |
|
1988-2159, gnl|hg17|chr21 (33840291-33840659) |
|
1988-2159, gnl|Hg17|chr21 (33840384-33840555) |
|
1988-2159, gnl|loxAfr1|scaffold_810 (63320-62921) |
|
1988-2159, gnl|mm7|chr16 (91701859-91702211) |
|
1988-2159, gnl|Mm7|chr16 (91701971-91702142) |
|
1988-2159, gnl|monDom2|scaffold_29 (14203607-14203217) |
|
1988-2159, gnl|panTro1|chr22 (33828271-33828639) |
|
1988-2159, gnl|rheMac2|chr3 (13014167-13013795) |
|
1988-2159, gnl|rn3|chr11 (31663601-31663945) |
|
cbr (2.81546) |
|
csk (0.422238) |
|
sug (0.381874) |
|
vin (0.332557) |
|
sme (0.305437) |
|
thg (0.253582) |
|
eep (0.245128) |
|
duo (0.172801) |
|
cki (0.165235) |
|
mga (0.160205) |
|
isp (0.150376) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
bla (0.124347) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
cbr (2.81546) |
|
csk (0.422238) |
|
sug (0.381874) |
|
vin (0.332557) |
|
sme (0.305437) |
|
thg (0.253582) |
|
eep (0.245128) |
|
duo (0.172801) |
|
cki (0.165235) |
|
mga (0.160205) |
|
isp (0.150376) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
bla (0.124347) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
eje (0.0988338) |
