Non-Coding RNA Search

Ss1.1-Utr1-UTR01A020088.5

Sequence:


               
               AAGACCTCTATTTAAGCAAATACTTAGCAAAAAGTGGGGCAGAGCCTCCCCAGCAGAACA
AATATTCATAATATTCATATTTGAAAATCACAATTTCTAATGGCAGCAGAAAACTTGTGT
GAAATTTTCTTGATTTAAGTTGATTTGAAAGAGGACATTGGAAATTCCATCCTCTTTTTC
TTTTCTGGGTTGCTCATACTACATTGATTGAGTAGACACATTTAAGGATGGGATTATGAA
CCCTTCTAAGTTTTTTGGTCCTAAAAACAAACAAATATCAAACCTATAGTAATGACAAGA
CAAGATAATCAGGCATTAACCTTGGATAGCTAAAGAGCTATTAAAACTCAGCCTGGGACA
GCTTATCATGAAGCCTGTGGATGATCAATTCTTAAAACAAAAAACAAAACAAAAAAACAC
CTCATTTCATGCTCTGCAAAAGGAGAGACTCCCATGAAGCCTTTTAAAAGGGATCATCAT
ATGCAGCTCAGCTTTCTGTTGGATTCCATGCTAAGCAAGCTAACCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACCTCTATTTAAGCAAATACTTAGCAAAAAGTGGGGCAGAGCCTCCCCAGCAGAACA
AATATTCATAATATTCATATTTGAAAATCACAATTTCTAATGGCAGCAGAAAACTTGTGT
GAAATTTTCTTGATTTAAGTTGATTTGAAAGAGGACATTGGAAATTCCATCCTCTTTTTC
TTTTCTGGGTTGCTCATACTACATTGATTGAGTAGACACATTTAAGGATGGGATTATGAA
CCCTTCTAAGTTTTTTGGTCCTAAAAACAAACAAATATCAAACCTATAGTAATGACAAGA
CAAGATAATCAGGCATTAACCTTGGATAGCTAAAGAGCTATTAAAACTCAGCCTGGGACA
GCTTATCATGAAGCCTGTGGATGATCAATTCTTAAAACAAAAAACAAAACAAAAAAACAC
CTCATTTCATGCTCTGCAAAAGGAGAGACTCCCATGAAGCCTTTTAAAAGGGATCATCAT
ATGCAGCTCAGCTTTCTGTTGGATTCCATGCTAAGCAAGCTAACCTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               101-203, - strand, RNAz p=0.851458
               

               
               120-274, + strand, RNAz p=0.86661

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-203, - strand, RNAz p=0.851458
               

               
               120-274, + strand, RNAz p=0.86661

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005962, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005962, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-528, gnl|bosTau2|chr26 (19434263-19433755)
               

               
               2-528, gnl|canFam2|chr28 (24654034-24654458)
               

               
               2-528, gnl|dasNov1|scaffold_15317 (21260-20829)
               

               
               2-528, gnl|echTel1|scaffold_315150 (186039-186438)
               

               
               2-528, gnl|hg17|chr10 (112034834-112035289)
               

               
               2-528, gnl|Hg17|chr10 (112034881-112035402)
               

               
               2-528, gnl|loxAfr1|scaffold_5717 (79316-79741)
               

               
               2-528, gnl|mm7|chr19 (53273757-53274182)
               

               
               2-528, gnl|Mm7|chr19 (53273791-53274292)
               

               
               2-528, gnl|monDom2|scaffold_14 (53039186-53038781)
               

               
               2-528, gnl|oryCun1|scaffold_193404 (28394-27962)
               

               
               2-528, gnl|panTro1|chr8 (113945065-113945515)
               

               
               2-528, gnl|rheMac2|chr9 (109976536-109976969)
               

               
               2-528, gnl|rn3|chr1 (259759076-259759490)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-528, gnl|bosTau2|chr26 (19434263-19433755)
               

               
               2-528, gnl|canFam2|chr28 (24654034-24654458)
               

               
               2-528, gnl|dasNov1|scaffold_15317 (21260-20829)
               

               
               2-528, gnl|echTel1|scaffold_315150 (186039-186438)
               

               
               2-528, gnl|hg17|chr10 (112034834-112035289)
               

               
               2-528, gnl|Hg17|chr10 (112034881-112035402)
               

               
               2-528, gnl|loxAfr1|scaffold_5717 (79316-79741)
               

               
               2-528, gnl|mm7|chr19 (53273757-53274182)
               

               
               2-528, gnl|Mm7|chr19 (53273791-53274292)
               

               
               2-528, gnl|monDom2|scaffold_14 (53039186-53038781)
               

               
               2-528, gnl|oryCun1|scaffold_193404 (28394-27962)
               

               
               2-528, gnl|panTro1|chr8 (113945065-113945515)
               

               
               2-528, gnl|rheMac2|chr9 (109976536-109976969)
               

               
               2-528, gnl|rn3|chr1 (259759076-259759490)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               eru (0.120048)

	101-203, - strand, RNAz p=0.851458
	120-274, + strand, RNAz p=0.86661

	2-528, gnl\|bosTau2\|chr26 (19434263-19433755)
	2-528, gnl\|canFam2\|chr28 (24654034-24654458)
	2-528, gnl\|dasNov1\|scaffold_15317 (21260-20829)
	2-528, gnl\|echTel1\|scaffold_315150 (186039-186438)
	2-528, gnl\|hg17\|chr10 (112034834-112035289)
	2-528, gnl\|Hg17\|chr10 (112034881-112035402)
	2-528, gnl\|loxAfr1\|scaffold_5717 (79316-79741)
	2-528, gnl\|mm7\|chr19 (53273757-53274182)
	2-528, gnl\|Mm7\|chr19 (53273791-53274292)
	2-528, gnl\|monDom2\|scaffold_14 (53039186-53038781)
	2-528, gnl\|oryCun1\|scaffold_193404 (28394-27962)
	2-528, gnl\|panTro1\|chr8 (113945065-113945515)
	2-528, gnl\|rheMac2\|chr9 (109976536-109976969)
	2-528, gnl\|rn3\|chr1 (259759076-259759490)