Non-Coding RNA Search

Ss1.1-Utr1-UTR01A030098.5

Sequence:


               
               GTTCCTGTCCCGGGATCGGAGCCGCCACCTTGACGGGGGGTCTCCAGGGCTGAGGGGCCC
GGGGAAAGGGGGCTAAAGGGCAGGATTCAGTCTGTGGGCTTGGCCAGTTCCGCGGGGGAG
GGCGGAGCATGCGGCTGTGCCGTGACTGAGGTTGCAGCTTCTCAAGGCCCCCGTGTCTGC
CTGGAATGAGGAGGAGGATGGTGCCACCTTTACTGTCACAAGTCGCCAGTATCAGCCTCC
TGATCCTTTGGCCCCAAGGCCTCCCCCGCGTTTCTCTCGGAGGCTCCGAGCCGGAACTTT
GGAGGCCCTTGTCAGACACCTGCTGGATGCCGGGACATCGGGGGCTGACGTGACCTTCAC
GGCCGCCTTCCTGGCCACTCACAGGGCCTTCACCTCCACACCTGCTGTGCTAGGACTGGT
GGCAGACAGGCTGGAAGCCCTTGAATCTCGTCCTCCTGATGAACTAGAGAGGACAAAAGG
GGTAGCCATCTCTGTACTGTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGA
GGTCAAGGGTCAGCTTGACCGGCTTGAGAGCTTCTTACTGCGGACAGGGTATGCAGCCGG
GGAGGGTGTTGGGGGGGGCGGCGCTGACCTCATCCGCAACCTCCGGTCCCGGGTGGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCTGTCCCGGGATCGGAGCCGCCACCTTGACGGGGGGTCTCCAGGGCTGAGGGGCCC
GGGGAAAGGGGGCTAAAGGGCAGGATTCAGTCTGTGGGCTTGGCCAGTTCCGCGGGGGAG
GGCGGAGCATGCGGCTGTGCCGTGACTGAGGTTGCAGCTTCTCAAGGCCCCCGTGTCTGC
CTGGAATGAGGAGGAGGATGGTGCCACCTTTACTGTCACAAGTCGCCAGTATCAGCCTCC
TGATCCTTTGGCCCCAAGGCCTCCCCCGCGTTTCTCTCGGAGGCTCCGAGCCGGAACTTT
GGAGGCCCTTGTCAGACACCTGCTGGATGCCGGGACATCGGGGGCTGACGTGACCTTCAC
GGCCGCCTTCCTGGCCACTCACAGGGCCTTCACCTCCACACCTGCTGTGCTAGGACTGGT
GGCAGACAGGCTGGAAGCCCTTGAATCTCGTCCTCCTGATGAACTAGAGAGGACAAAAGG
GGTAGCCATCTCTGTACTGTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGA
GGTCAAGGGTCAGCTTGACCGGCTTGAGAGCTTCTTACTGCGGACAGGGTATGCAGCCGG
GGAGGGTGTTGGGGGGGGCGGCGCTGACCTCATCCGCAACCTCCGGTCCCGGGTGGACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15799218|emb|CAC88186.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15799218|emb|CAC88186.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               289-408, - strand, RNAz p=0.900091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-408, - strand, RNAz p=0.900091

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-166, gnl|bosTau2|chr23 (5834757-5834593)
               

               
               2-166, gnl|canFam2|chr12 (5741076-5741355)
               

               
               2-166, gnl|echTel1|scaffold_265494 (586-258)
               

               
               2-166, gnl|hg17|chr6 (33373199-33373495)
               

               
               2-166, gnl|Hg17|chr6 (33373433-33373249)
               

               
               2-166, gnl|mm7|chr17 (32009445-32009160)
               

               
               2-166, gnl|Mm7|chr17 (32009212-32009387)
               

               
               2-166, gnl|monDom2|scaffold_42 (15131672-15131284)
               

               
               2-166, gnl|rheMac2|chr4 (33011187-33011483)
               

               
               2-166, gnl|rn3|chr20 (5106809-5107072)
               


               
               250-430, gnl|bosTau2|chr23 (5833876-5833696)
               

               
               250-430, gnl|Hg17|chr6 (33372532-33372352)
               

               
               250-430, gnl|Mm7|chr17 (32010069-32010249)
               


               
               480-660, gnl|bosTau2|chr23 (5833429-5833249)
               

               
               480-660, gnl|Hg17|chr6 (33372081-33371901)
               

               
               480-660, gnl|Mm7|chr17 (32010483-32010663)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-166, gnl|bosTau2|chr23 (5834757-5834593)
               

               
               2-166, gnl|canFam2|chr12 (5741076-5741355)
               

               
               2-166, gnl|echTel1|scaffold_265494 (586-258)
               

               
               2-166, gnl|hg17|chr6 (33373199-33373495)
               

               
               2-166, gnl|Hg17|chr6 (33373433-33373249)
               

               
               2-166, gnl|mm7|chr17 (32009445-32009160)
               

               
               2-166, gnl|Mm7|chr17 (32009212-32009387)
               

               
               2-166, gnl|monDom2|scaffold_42 (15131672-15131284)
               

               
               2-166, gnl|rheMac2|chr4 (33011187-33011483)
               

               
               2-166, gnl|rn3|chr20 (5106809-5107072)
               


               
               250-430, gnl|bosTau2|chr23 (5833876-5833696)
               

               
               250-430, gnl|Hg17|chr6 (33372532-33372352)
               

               
               250-430, gnl|Mm7|chr17 (32010069-32010249)
               


               
               480-660, gnl|bosTau2|chr23 (5833429-5833249)
               

               
               480-660, gnl|Hg17|chr6 (33372081-33371901)
               

               
               480-660, gnl|Mm7|chr17 (32010483-32010663)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	2-166, gnl\|bosTau2\|chr23 (5834757-5834593)
	2-166, gnl\|canFam2\|chr12 (5741076-5741355)
	2-166, gnl\|echTel1\|scaffold_265494 (586-258)
	2-166, gnl\|hg17\|chr6 (33373199-33373495)
	2-166, gnl\|Hg17\|chr6 (33373433-33373249)
	2-166, gnl\|mm7\|chr17 (32009445-32009160)
	2-166, gnl\|Mm7\|chr17 (32009212-32009387)
	2-166, gnl\|monDom2\|scaffold_42 (15131672-15131284)
	2-166, gnl\|rheMac2\|chr4 (33011187-33011483)
	2-166, gnl\|rn3\|chr20 (5106809-5107072)

	250-430, gnl\|bosTau2\|chr23 (5833876-5833696)
	250-430, gnl\|Hg17\|chr6 (33372532-33372352)
	250-430, gnl\|Mm7\|chr17 (32010069-32010249)

	480-660, gnl\|bosTau2\|chr23 (5833429-5833249)
	480-660, gnl\|Hg17\|chr6 (33372081-33371901)
	480-660, gnl\|Mm7\|chr17 (32010483-32010663)