Ss1.1-Utr1-UTR01A040082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGTGAGGCGGCGGGGCAGCTCGGCAACATGGCGTCTGTGGCTCTAAGTGAGGCGGAGAA GGTGTACATCGTGCATGGTGTTCAGGAAGACCTTCGCGTGGATGGCCGTGGCTGTGAGGA CTATCGATGTGTCGAAGTGGAAACCGACGTGGTGTCCAACACCAGTGGGTCTGCCAGGGT CAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACGCCGAAGCT GGAGAAACCAAACGAAGGTTACTTGGAGTTTTTTGTTGACTGTTCAGCCAATGCTACCCC TGAATTTGAAGGTCGAGGAGGTGATGAGCTTGGCACGGAGATTGCTAACACCCTTTACCG GATATTTAACAACAAGGGCAGCATCGACCTGAAGTCCCTGTGCATCAGTACTCGGGAGCA CTGCTGGATTCTCTACGTGGACGTGCTGCTGCTAGAATGTGGTGGAAATTTGTTTGATGC CATATCCATTGCTGTAAAGGCTGCGCTCTTCAATACCAGGATACCGAGAGTTCGTGTTCT GGAAGATGAAGAGGGGTCAAAGGACATTGAACTGAGCGATGACCCTTATGACTGCATCCA GCTAAATGTGGAGAATGTCCCCTGTATTGTCACCCTATGCAAGATCGGCTATCGGCACGT GGTGGATGCTACTCTTCAGGAGGAGGCCTGCTCCTTGGCCAGCTTGCTGGTGGCCGTGAC CAGCAAGGGAGTCGTGACGTGCATGCGGAAAGTGGGGAAGGGCAGCCTGGACCCAGAGAG CATCTTCGAGATGATGGAGACTGGCAAGCGTGTGGGCAAGGTGCTGCACACCTCCCTGCA GAGTCTTCTACACAAGGAGGAAAGCCTGGGTCCCAAGAGACAGAAAGTCGGATTCCTGGG ATGATCCACCCTCAACGGCCAAGTGTGGGGTTTCTACTTTTCCTTTTAAGCTGACGTTTG TATATATCTTTCTTAGCTATTATGAATTTAAGGCAGCATCTGAACGTGTGAAATTAAAGT CCATTTTCTGGTTTGACTTGGTACGGCAGTAAGCCAAGATGCCAGTCAGTGACCCCTCAG GTATTCTTACCCTGGTCTAGTGAATGACAGCTTAATCCAGAGAACAATGACAAGCACACT AGAATATAACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGTGAGGCGGCGGGGCAGCTCGGCAACATGGCGTCTGTGGCTCTAAGTGAGGCGGAGAA GGTGTACATCGTGCATGGTGTTCAGGAAGACCTTCGCGTGGATGGCCGTGGCTGTGAGGA CTATCGATGTGTCGAAGTGGAAACCGACGTGGTGTCCAACACCAGTGGGTCTGCCAGGGT CAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACGCCGAAGCT GGAGAAACCAAACGAAGGTTACTTGGAGTTTTTTGTTGACTGTTCAGCCAATGCTACCCC TGAATTTGAAGGTCGAGGAGGTGATGAGCTTGGCACGGAGATTGCTAACACCCTTTACCG GATATTTAACAACAAGGGCAGCATCGACCTGAAGTCCCTGTGCATCAGTACTCGGGAGCA CTGCTGGATTCTCTACGTGGACGTGCTGCTGCTAGAATGTGGTGGAAATTTGTTTGATGC CATATCCATTGCTGTAAAGGCTGCGCTCTTCAATACCAGGATACCGAGAGTTCGTGTTCT GGAAGATGAAGAGGGGTCAAAGGACATTGAACTGAGCGATGACCCTTATGACTGCATCCA GCTAAATGTGGAGAATGTCCCCTGTATTGTCACCCTATGCAAGATCGGCTATCGGCACGT GGTGGATGCTACTCTTCAGGAGGAGGCCTGCTCCTTGGCCAGCTTGCTGGTGGCCGTGAC CAGCAAGGGAGTCGTGACGTGCATGCGGAAAGTGGGGAAGGGCAGCCTGGACCCAGAGAG CATCTTCGAGATGATGGAGACTGGCAAGCGTGTGGGCAAGGTGCTGCACACCTCCCTGCA GAGTCTTCTACACAAGGAGGAAAGCCTGGGTCCCAAGAGACAGAAAGTCGGATTCCTGGG ATGATCCACCCTCAACGGCCAAGTGTGGGGTTTCTACTTTTCCTTTTAAGCTGACGTTTG TATATATCTTTCTTAGCTATTATGAATTTAAGGCAGCATCTGAACGTGTGAAATTAAAGT CCATTTTCTGGTTTGACTTGGTACGGCAGTAAGCCAAGATGCCAGTCAGTGACCCCTCAG GTATTCTTACCCTGGTCTAGTGAATGACAGCTTAATCCAGAGAACAATGACAAGCACACT AGAATATAACTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 99-188, - strand, RNAz p=0.632362 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 99-188, - strand, RNAz p=0.632362 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 83-188, gnl|bosTau2|chr9 (21523195-21523300) | |
| 83-188, gnl|canFam2|chr20 (46371322-46371176) | |
| 83-188, gnl|danRer3|chr19 (65344994-65344866) | |
| 83-188, gnl|dasNov1|scaffold_19194 (23656-23548) | |
| 83-188, gnl|echTel1|scaffold_274729 (12273-12141) | |
| 83-188, gnl|fr1|chrUn (190458951-190458814) | |
| 83-188, gnl|galGal2|chr2 (42218461-42218338) | |
| 83-188, gnl|hg17|chr3 (45005617-45005763) | |
| 83-188, gnl|Hg17|chr3 (45005633-45005738) | |
| 83-188, gnl|loxAfr1|scaffold_3136 (103716-103571) | |
| 83-188, gnl|mm7|chr9 (122824275-122824416) | |
| 83-188, gnl|Mm7|chr9 (122824286-122824391) | |
| 83-188, gnl|monDom2|scaffold_7 (65597825-65597959) | |
| 83-188, gnl|panTro1|chr2 (46325414-46325560) | |
| 83-188, gnl|rheMac2|chr2 (91543225-91543079) | |
| 83-188, gnl|rn3|chr8 (127893650-127893791) | |
| 83-188, gnl|tetNig1|chrUn_random (108313089-108312969) | |
| 282-448, gnl|bosTau2|chr9 (21529802-21529968) | |
| 282-448, gnl|Hg17|chr3 (45013582-45013748) | |
| 282-448, gnl|Mm7|chr9 (122833203-122833369) | |
| 518-642, gnl|bosTau2|chr9 (21537505-21537629) | |
| 518-642, gnl|canFam2|chr20 (46349328-46349161) | |
| 518-642, gnl|danRer3|chr20 (20795556-20795708) | |
| 518-642, gnl|dasNov1|scaffold_19194 (4995-4828) | |
| 518-642, gnl|echTel1|scaffold_295593 (621-775) | |
| 518-642, gnl|fr1|chrUn (190457958-190457807) | |
| 518-642, gnl|galGal2|chr2 (42203116-42202957) | |
| 518-642, gnl|hg17|chr3 (45021763-45021929) | |
| 518-642, gnl|Hg17|chr3 (45021785-45021909) | |
| 518-642, gnl|loxAfr1|scaffold_914 (92708-92873) | |
| 518-642, gnl|mm7|chr9 (122836203-122836368) | |
| 518-642, gnl|Mm7|chr9 (122836223-122836347) | |
| 518-642, gnl|monDom2|scaffold_7 (65626396-65626564) | |
| 518-642, gnl|oryCun1|scaffold_176268 (96116-96282) | |
| 518-642, gnl|panTro1|chr2 (46341499-46341665) | |
| 518-642, gnl|rheMac2|chr2 (91527128-91526961) | |
| 518-642, gnl|rn3|chr8 (127907378-127907542) | |
| 518-642, gnl|tetNig1|chrUn_random (91762290-91762152) | |
| 518-642, gnl|xenTro1|scaffold_221 (109750-109583) | |
| 784-1032, gnl|bosTau2|chr9 (21540773-21541031) | |
| 784-1032, gnl|Hg17|chr3 (45027720-45027966) | |
| 784-1032, gnl|Mm7|chr9 (122841281-122841524) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-188, gnl|bosTau2|chr9 (21523195-21523300) | |
| 83-188, gnl|canFam2|chr20 (46371322-46371176) | |
| 83-188, gnl|danRer3|chr19 (65344994-65344866) | |
| 83-188, gnl|dasNov1|scaffold_19194 (23656-23548) | |
| 83-188, gnl|echTel1|scaffold_274729 (12273-12141) | |
| 83-188, gnl|fr1|chrUn (190458951-190458814) | |
| 83-188, gnl|galGal2|chr2 (42218461-42218338) | |
| 83-188, gnl|hg17|chr3 (45005617-45005763) | |
| 83-188, gnl|Hg17|chr3 (45005633-45005738) | |
| 83-188, gnl|loxAfr1|scaffold_3136 (103716-103571) | |
| 83-188, gnl|mm7|chr9 (122824275-122824416) | |
| 83-188, gnl|Mm7|chr9 (122824286-122824391) | |
| 83-188, gnl|monDom2|scaffold_7 (65597825-65597959) | |
| 83-188, gnl|panTro1|chr2 (46325414-46325560) | |
| 83-188, gnl|rheMac2|chr2 (91543225-91543079) | |
| 83-188, gnl|rn3|chr8 (127893650-127893791) | |
| 83-188, gnl|tetNig1|chrUn_random (108313089-108312969) | |
| 282-448, gnl|bosTau2|chr9 (21529802-21529968) | |
| 282-448, gnl|Hg17|chr3 (45013582-45013748) | |
| 282-448, gnl|Mm7|chr9 (122833203-122833369) | |
| 518-642, gnl|bosTau2|chr9 (21537505-21537629) | |
| 518-642, gnl|canFam2|chr20 (46349328-46349161) | |
| 518-642, gnl|danRer3|chr20 (20795556-20795708) | |
| 518-642, gnl|dasNov1|scaffold_19194 (4995-4828) | |
| 518-642, gnl|echTel1|scaffold_295593 (621-775) | |
| 518-642, gnl|fr1|chrUn (190457958-190457807) | |
| 518-642, gnl|galGal2|chr2 (42203116-42202957) | |
| 518-642, gnl|hg17|chr3 (45021763-45021929) | |
| 518-642, gnl|Hg17|chr3 (45021785-45021909) | |
| 518-642, gnl|loxAfr1|scaffold_914 (92708-92873) | |
| 518-642, gnl|mm7|chr9 (122836203-122836368) | |
| 518-642, gnl|Mm7|chr9 (122836223-122836347) | |
| 518-642, gnl|monDom2|scaffold_7 (65626396-65626564) | |
| 518-642, gnl|oryCun1|scaffold_176268 (96116-96282) | |
| 518-642, gnl|panTro1|chr2 (46341499-46341665) | |
| 518-642, gnl|rheMac2|chr2 (91527128-91526961) | |
| 518-642, gnl|rn3|chr8 (127907378-127907542) | |
| 518-642, gnl|tetNig1|chrUn_random (91762290-91762152) | |
| 518-642, gnl|xenTro1|scaffold_221 (109750-109583) | |
| 784-1032, gnl|bosTau2|chr9 (21540773-21541031) | |
| 784-1032, gnl|Hg17|chr3 (45027720-45027966) | |
| 784-1032, gnl|Mm7|chr9 (122841281-122841524) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| aor (0.195274) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| cst (0.140036) | |
| hlv (0.139256) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.195274) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| cst (0.140036) | |
| hlv (0.139256) |