Non-Coding RNA Search

Ss1.1-Utr1-UTR01A050082.5

Sequence:


               
               CCTTTTCATAGATGCGCATCGGGAATTCCTTCACAGGCCTGCTTCTGGATATGTGCCAGA
GGAGATCTGGAAGAAAGCTGAGGAGGCGGTCAATGAGGTGAAGCGCCAGGCGATGACCGA
GCTGCAGAAGGCCGTGTCAGAGGCCGAGCGGAAAGCACACGACATGATCACCTCGGAGCG
TGCAAAGATGGAGCGCACGGTGGCCGAGGCCAAGCGGCAGGCAGCAGAGGACGCCCTAGC
CGTTATCAACCAGCAGGAAGATTCAAGCGAGAGTTGCTGGAATTGTGGCCGTAAAGCAAG
TGAAACCTGCAGCGGCTGTAACACAGCCCGATACTGTGGCTCGTTTTGCCAGCACAAAGA
CTGGGAGAAGCACCACCACATCTGTGGACAGACCCTGCAAGCCCAGCAGCAGGGGGACAC
GCCTGCTGTCAGCTCCTCCGTCACACCCAACAGTGGGGCCGGGAGCCCAATGGACACACC
ACCAGCAGCCACCCCGAGGTCAACCACCCCGGGAACCCCTTCCACCATAGAGACAACCCC
TCGCTAGGCGTGCACCCAGAACTGTCGGAGGAAAGACACCACAACCAACACGAAACCAGT
TCCTCATCCTCAGATGCTCAAAGTTGTTTTTTTGTTTGTTTGTTTATAGATGAACTATCC
TATTTCAGTATTTCAGCAAGAGAGAACCTGACTGTATCTTGAGGCGGTAGTAAAACAGAG
GGCCAGTAACGGGTCGTAATGACTTATTGTGGATAACAAAGATATCTTTTCCTTAGAGAA
CTGAAAAGAGCAGAGAATATAACATGAAATGATAGATTTGACCTCCTCCCTGTTATTTTC
CAGTAGCTGGGATTTTAAACTAGATGACCTCATTAACCGATGCTTTACCAAACAGCAAAC
CAAGAGATTGCTAATTGCTGTTGAAAGCAAAAATGCTAATATTAAAAGTCACAATGTTCT
TTATATACAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTCATAGATGCGCATCGGGAATTCCTTCACAGGCCTGCTTCTGGATATGTGCCAGA
GGAGATCTGGAAGAAAGCTGAGGAGGCGGTCAATGAGGTGAAGCGCCAGGCGATGACCGA
GCTGCAGAAGGCCGTGTCAGAGGCCGAGCGGAAAGCACACGACATGATCACCTCGGAGCG
TGCAAAGATGGAGCGCACGGTGGCCGAGGCCAAGCGGCAGGCAGCAGAGGACGCCCTAGC
CGTTATCAACCAGCAGGAAGATTCAAGCGAGAGTTGCTGGAATTGTGGCCGTAAAGCAAG
TGAAACCTGCAGCGGCTGTAACACAGCCCGATACTGTGGCTCGTTTTGCCAGCACAAAGA
CTGGGAGAAGCACCACCACATCTGTGGACAGACCCTGCAAGCCCAGCAGCAGGGGGACAC
GCCTGCTGTCAGCTCCTCCGTCACACCCAACAGTGGGGCCGGGAGCCCAATGGACACACC
ACCAGCAGCCACCCCGAGGTCAACCACCCCGGGAACCCCTTCCACCATAGAGACAACCCC
TCGCTAGGCGTGCACCCAGAACTGTCGGAGGAAAGACACCACAACCAACACGAAACCAGT
TCCTCATCCTCAGATGCTCAAAGTTGTTTTTTTGTTTGTTTGTTTATAGATGAACTATCC
TATTTCAGTATTTCAGCAAGAGAGAACCTGACTGTATCTTGAGGCGGTAGTAAAACAGAG
GGCCAGTAACGGGTCGTAATGACTTATTGTGGATAACAAAGATATCTTTTCCTTAGAGAA
CTGAAAAGAGCAGAGAATATAACATGAAATGATAGATTTGACCTCCTCCCTGTTATTTTC
CAGTAGCTGGGATTTTAAACTAGATGACCTCATTAACCGATGCTTTACCAAACAGCAAAC
CAAGAGATTGCTAATTGCTGTTGAAAGCAAAAATGCTAATATTAAAAGTCACAATGTTCT
TTATATACAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33585598|gb|AAH55951.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33585598|gb|AAH55951.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               812-972, - strand, RNAz p=0.957156

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               812-972, - strand, RNAz p=0.957156

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               270-406, gnl|bosTau2|chr13 (48326482-48326346)
               

               
               270-406, gnl|Hg17|chr20 (31695812-31695948)
               

               
               270-406, gnl|Mm7|chr2 (154275740-154275876)
               


               
               623-972, gnl|bosTau2|chr14 (45339513-45339161)
               

               
               623-972, gnl|Hg17|chr8 (93041554-93041215)
               

               
               623-972, gnl|Mm7|chr4 (13817120-13817466)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               270-406, gnl|bosTau2|chr13 (48326482-48326346)
               

               
               270-406, gnl|Hg17|chr20 (31695812-31695948)
               

               
               270-406, gnl|Mm7|chr2 (154275740-154275876)
               


               
               623-972, gnl|bosTau2|chr14 (45339513-45339161)
               

               
               623-972, gnl|Hg17|chr8 (93041554-93041215)
               

               
               623-972, gnl|Mm7|chr4 (13817120-13817466)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               gul (0.177588)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)

	270-406, gnl\|bosTau2\|chr13 (48326482-48326346)
	270-406, gnl\|Hg17\|chr20 (31695812-31695948)
	270-406, gnl\|Mm7\|chr2 (154275740-154275876)

	623-972, gnl\|bosTau2\|chr14 (45339513-45339161)
	623-972, gnl\|Hg17\|chr8 (93041554-93041215)
	623-972, gnl\|Mm7\|chr4 (13817120-13817466)

	gul (0.177588)
	rec (0.17307)
	tbr (0.154178)
	spl (0.143184)
	csk (0.140746)
	ova (0.129132)