Ss1.1-Utr1-UTR01A100092.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGGCGGTGCGAGGGCTGCTGCACAGCTAGCAGAGCCGCGGTCCGGACGGCAGCGCGT GCCCCAAGCTCTCTGCCTTCCCCCGCCCGCCAGTCCGAGGCAGCCCGAGCCCAACCCGCG GCCCCAGCAGTAGCCCCGAGAGCAGCCCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCT ACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTATAAGG ACTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACCTTCGTCAACATCACGCCAGCTG AGGTTGGTGTCCTGGTTGGCAAAGACCGGTCAAGTTTTTTCGTGAATGGGCTAACGCTTG GGGGCCAGAAATGCTCTGTGATCCGGGACTCACTGCTGCAGGACGGGGAATTTACCATGG ATCTTCGTACCAAGAGCACTGGCGGAGCCCCCACCTTCAATATCACTGTCACCATGACTG CCAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTATGATCAACAAGA AATGTTATGAAATGGCTTCCCACCTGCGGCGTTCCCAGTACTGACCTCGTCTGTCCCTCC CCTTCACTCCCCACTGCTTTTGCACCCCTCTCCTTCCCACACACACACATCCACCATTTT TATTTTTTGGGCCATTACCCCACACCCCTTATTGCTGCCAAAACCACGTGGATTGGGGGC CAGGGCTGGATGGACAGACACCTCCCCCAACCCATACCCTTTCCTGTGTGTGGTTGGAAA ACTTTTTTTGTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTCTGAATAAAAAAAGATT CTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGGCGGTGCGAGGGCTGCTGCACAGCTAGCAGAGCCGCGGTCCGGACGGCAGCGCGT GCCCCAAGCTCTCTGCCTTCCCCCGCCCGCCAGTCCGAGGCAGCCCGAGCCCAACCCGCG GCCCCAGCAGTAGCCCCGAGAGCAGCCCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCT ACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTATAAGG ACTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACCTTCGTCAACATCACGCCAGCTG AGGTTGGTGTCCTGGTTGGCAAAGACCGGTCAAGTTTTTTCGTGAATGGGCTAACGCTTG GGGGCCAGAAATGCTCTGTGATCCGGGACTCACTGCTGCAGGACGGGGAATTTACCATGG ATCTTCGTACCAAGAGCACTGGCGGAGCCCCCACCTTCAATATCACTGTCACCATGACTG CCAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTATGATCAACAAGA AATGTTATGAAATGGCTTCCCACCTGCGGCGTTCCCAGTACTGACCTCGTCTGTCCCTCC CCTTCACTCCCCACTGCTTTTGCACCCCTCTCCTTCCCACACACACACATCCACCATTTT TATTTTTTGGGCCATTACCCCACACCCCTTATTGCTGCCAAAACCACGTGGATTGGGGGC CAGGGCTGGATGGACAGACACCTCCCCCAACCCATACCCTTTCCTGTGTGTGGTTGGAAA ACTTTTTTTGTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTCTGAATAAAAAAAGATT CTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 643-797, - strand, RNAz p=0.792136 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 643-797, - strand, RNAz p=0.792136 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-302, gnl|bosTau2|chr19 (14839258-14838968) | |
| 1-302, gnl|canFam2|chr18 (32610807-32611052) | |
| 1-302, gnl|dasNov1|scaffold_119910 (615-397) | |
| 1-302, gnl|echTel1|scaffold_261469 (10289-10574) | |
| 1-302, gnl|hg17|chr1 (21531753-21532005) | |
| 1-302, gnl|Hg17|chr17 (4792594-4792295) | |
| 1-302, gnl|loxAfr1|scaffold_43403 (34179-33925) | |
| 1-302, gnl|mm7|chr11 (70735924-70736186) | |
| 1-302, gnl|Mm7|chr11 (70736206-70735915) | |
| 1-302, gnl|monDom2|scaffold_66 (3449121-3448894) | |
| 1-302, gnl|oryCun1|scaffold_176516 (114874-115118) | |
| 1-302, gnl|panTro1|chr1 (21865701-21865953) | |
| 1-302, gnl|rheMac2|chr1 (126382097-126382365) | |
| 1-302, gnl|rn3|chr10 (57547742-57548003) | |
| 487-808, gnl|bosTau2|chr19 (14836517-14836191) | |
| 487-808, gnl|canFam2|chr13 (44227607-44227858) | |
| 487-808, gnl|dasNov1|scaffold_119910 (1061-804) | |
| 487-808, gnl|echTel1|scaffold_261469 (9828-10095) | |
| 487-808, gnl|hg17|chr10 (104587581-104587867) | |
| 487-808, gnl|Hg17|chr17 (4790037-4789720) | |
| 487-808, gnl|loxAfr1|scaffold_43403 (34629-34365) | |
| 487-808, gnl|mm7|chr11 (70733574-70733797) | |
| 487-808, gnl|Mm7|chr11 (70733795-70733448) | |
| 487-808, gnl|monDom2|scaffold_66 (3451590-3451331) | |
| 487-808, gnl|oryCun1|scaffold_177492 (72623-72357) | |
| 487-808, gnl|panTro1|chr8 (106350309-106350549) | |
| 487-808, gnl|rheMac2|chr9 (102517192-102517480) | |
| 487-808, gnl|rn3|chr9 (87837619-87837840) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-302, gnl|bosTau2|chr19 (14839258-14838968) | |
| 1-302, gnl|canFam2|chr18 (32610807-32611052) | |
| 1-302, gnl|dasNov1|scaffold_119910 (615-397) | |
| 1-302, gnl|echTel1|scaffold_261469 (10289-10574) | |
| 1-302, gnl|hg17|chr1 (21531753-21532005) | |
| 1-302, gnl|Hg17|chr17 (4792594-4792295) | |
| 1-302, gnl|loxAfr1|scaffold_43403 (34179-33925) | |
| 1-302, gnl|mm7|chr11 (70735924-70736186) | |
| 1-302, gnl|Mm7|chr11 (70736206-70735915) | |
| 1-302, gnl|monDom2|scaffold_66 (3449121-3448894) | |
| 1-302, gnl|oryCun1|scaffold_176516 (114874-115118) | |
| 1-302, gnl|panTro1|chr1 (21865701-21865953) | |
| 1-302, gnl|rheMac2|chr1 (126382097-126382365) | |
| 1-302, gnl|rn3|chr10 (57547742-57548003) | |
| 487-808, gnl|bosTau2|chr19 (14836517-14836191) | |
| 487-808, gnl|canFam2|chr13 (44227607-44227858) | |
| 487-808, gnl|dasNov1|scaffold_119910 (1061-804) | |
| 487-808, gnl|echTel1|scaffold_261469 (9828-10095) | |
| 487-808, gnl|hg17|chr10 (104587581-104587867) | |
| 487-808, gnl|Hg17|chr17 (4790037-4789720) | |
| 487-808, gnl|loxAfr1|scaffold_43403 (34629-34365) | |
| 487-808, gnl|mm7|chr11 (70733574-70733797) | |
| 487-808, gnl|Mm7|chr11 (70733795-70733448) | |
| 487-808, gnl|monDom2|scaffold_66 (3451590-3451331) | |
| 487-808, gnl|oryCun1|scaffold_177492 (72623-72357) | |
| 487-808, gnl|panTro1|chr8 (106350309-106350549) | |
| 487-808, gnl|rheMac2|chr9 (102517192-102517480) | |
| 487-808, gnl|rn3|chr9 (87837619-87837840) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| duo (1.03681) | |
| col (0.780031) | |
| med (0.697512) | |
| jej (0.692452) | |
| mcp (0.682594) | |
| cly (0.603209) | |
| ute (0.531138) | |
| fty (0.527519) | |
| pty (0.428143) | |
| nmm (0.398406) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| ill (0.351185) | |
| eye (0.341006) | |
| nje (0.33184) | |
| cje (0.330469) | |
| csp (0.322373) | |
| ese (0.253004) | |
| bla (0.248694) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| nco (0.161734) | |
| cli (0.152812) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| thg (0.126791) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (1.03681) | |
| col (0.780031) | |
| med (0.697512) | |
| jej (0.692452) | |
| mcp (0.682594) | |
| cly (0.603209) | |
| ute (0.531138) | |
| fty (0.527519) | |
| pty (0.428143) | |
| nmm (0.398406) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| ill (0.351185) | |
| eye (0.341006) | |
| nje (0.33184) | |
| cje (0.330469) | |
| csp (0.322373) | |
| ese (0.253004) | |
| bla (0.248694) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| nco (0.161734) | |
| cli (0.152812) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| thg (0.126791) |