Non-Coding RNA Search

Ss1.1-Utr1-UTR01A110101.5

Sequence:


               
               TAAACAAACAGCCAGGAGCGAGACCAGGGAGAAAGGAGGTACAGGCAGAACACAGAGGGA
GGGAGAGTTCAGTGAGGCAGGCAGTTTTTTTTTCTAGCCATCAACACTTTATTCTTCCAG
TCCACACCTGCACAGATGTTACTGTCCACTTCCTGACCCTAGTAGGGGGTCCCACCACAC
TTGGACCAAGAAGCAGGTCTCCTCATTCCTCCTTAGGGTAATAAGAAAGCCCCTCACCTG
ACAGGACAGAGTTCCTGCTAACACAGCACTGGCGCATGTGCTGTGGGACCCCTGCTCTCA
TATTGTGCTGGGATGACCCAGGGCAAGGGTGCAAGGGAGGTTACAGGGGCTACAGTGACC
TAAGTGCATAACTACTGCCCTGACCCATCATCTCAGGTTTCCTCTATCTGCAGGACAGGA
GCCTCCCTAGAGGGAAGGAAGTGCTGGCAGAGTGGGGATTGAGCTGCTAAGGACAGGACA
CAGCAGGGAGATAAAGCAAGGCGGAGCATGGGACACGGTTTGTGAAAAAGGATAAAGTGC
CTGAACTAACAACTGAGTGGGACACGAGGACAGAGCAGCACAGGTCCCTGAGGATAGGAG
GAAAAAGAAAGGGACAGACCACCAGGGCTTGGGACATAGTGGAATGAAACCAGAGATGAG
GCAGGGAGGCAAGTGGGAAGGACTCCCCAGCCCTGTTCATATCCACTAACCCAAATGTAA
AATTATTTACAAACTTAAAATCAATCCCAGGTACTGTACCAGGCCCGGGACAGCAGGCAG
GCAGGCAGGCAGGCGGAGGGCAGACTGGCTACGGCCTGATGGCCAGCTTCCGCACGTCTT
GCTCCTCCCGAGTAGCAGGGAAAGGAGGAAACAGTGACAGCCCTAGCCAGGAAGCCCTAC
TGTGCCTGCAACTCCTTCCCCCACGGCTCATGGCTCTGCCACGGCCTGAGCCTCTTGGTC
TGACTGTACCAGAGACAGGGTATCGGGCCCGAGGGGAGGAGGGGGTGGCGCATCAGGGGG
CTCTGCCGATGTCTCTGGCCCCAACCCCAGCTCCGCATTCAGCTGCTCCAGCTCCCCCTG
ATCCAGCAACTCGAAGTCCTCAGTGGTGAGTGCCTCTTCTTCCTCAGGGGCAGGCAGGGG
CTGGGGTGAGTCTTGGGGAAGAGGAGGAGGGAGTACCGGGGGGGAGGGGACTGGGTCACT
TTCAGCAAGGCAAAGTAGGGGTGACAGGGCGCTGGGTGGAGTGGTGAGGTCACCACTCAT
TGCCTCCGGGCTCAGTGTCGCCACTGGTCCTTCAGGGGAGAGCATCACTCCATCGGTGGG
AGACCCTGCCCCATTGAAGTGCGTGTTCACAAAGTGAAGGGGGGATGAGAGCCGAAGCAA
GGTTTCCTCGGATGCCACCTGTTCCTCCTCCAAGTCCAGGTTTTGCCTTGAGAGGGCTTG
AGGGGGGCCCAGCAGGTCCTCGGGAGGGGCCAGGTCTGTCTCCTCTCCCTCCCCCAGCTC
CCGACTCAGGGCCTCCTCTGGCTCGCTTGGCAGGCTCTGCTGGTCCAAATCCTCTGACAC
ATCAGTCAGCTGTGGAGTCGTCGCCCGGGATACTGAGAAGCCGCCACTTTCCAGTATGGA
AGCCTCCTCGTCTGACAGTTCTGAGTCTGTAATGGCCAAAGCCAATGCTGTTTTCTTTAC
ATCCACCACCGGGGAGAAGCCGGCCAGCTCTGCTTCGCTCTCACTCTCTGTCTCTGCCAG
TGGCTCATCGCCTCCCGGGGGTGCGCTCTTCCCCTGGCGCTTCCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACAAACAGCCAGGAGCGAGACCAGGGAGAAAGGAGGTACAGGCAGAACACAGAGGGA
GGGAGAGTTCAGTGAGGCAGGCAGTTTTTTTTTCTAGCCATCAACACTTTATTCTTCCAG
TCCACACCTGCACAGATGTTACTGTCCACTTCCTGACCCTAGTAGGGGGTCCCACCACAC
TTGGACCAAGAAGCAGGTCTCCTCATTCCTCCTTAGGGTAATAAGAAAGCCCCTCACCTG
ACAGGACAGAGTTCCTGCTAACACAGCACTGGCGCATGTGCTGTGGGACCCCTGCTCTCA
TATTGTGCTGGGATGACCCAGGGCAAGGGTGCAAGGGAGGTTACAGGGGCTACAGTGACC
TAAGTGCATAACTACTGCCCTGACCCATCATCTCAGGTTTCCTCTATCTGCAGGACAGGA
GCCTCCCTAGAGGGAAGGAAGTGCTGGCAGAGTGGGGATTGAGCTGCTAAGGACAGGACA
CAGCAGGGAGATAAAGCAAGGCGGAGCATGGGACACGGTTTGTGAAAAAGGATAAAGTGC
CTGAACTAACAACTGAGTGGGACACGAGGACAGAGCAGCACAGGTCCCTGAGGATAGGAG
GAAAAAGAAAGGGACAGACCACCAGGGCTTGGGACATAGTGGAATGAAACCAGAGATGAG
GCAGGGAGGCAAGTGGGAAGGACTCCCCAGCCCTGTTCATATCCACTAACCCAAATGTAA
AATTATTTACAAACTTAAAATCAATCCCAGGTACTGTACCAGGCCCGGGACAGCAGGCAG
GCAGGCAGGCAGGCGGAGGGCAGACTGGCTACGGCCTGATGGCCAGCTTCCGCACGTCTT
GCTCCTCCCGAGTAGCAGGGAAAGGAGGAAACAGTGACAGCCCTAGCCAGGAAGCCCTAC
TGTGCCTGCAACTCCTTCCCCCACGGCTCATGGCTCTGCCACGGCCTGAGCCTCTTGGTC
TGACTGTACCAGAGACAGGGTATCGGGCCCGAGGGGAGGAGGGGGTGGCGCATCAGGGGG
CTCTGCCGATGTCTCTGGCCCCAACCCCAGCTCCGCATTCAGCTGCTCCAGCTCCCCCTG
ATCCAGCAACTCGAAGTCCTCAGTGGTGAGTGCCTCTTCTTCCTCAGGGGCAGGCAGGGG
CTGGGGTGAGTCTTGGGGAAGAGGAGGAGGGAGTACCGGGGGGGAGGGGACTGGGTCACT
TTCAGCAAGGCAAAGTAGGGGTGACAGGGCGCTGGGTGGAGTGGTGAGGTCACCACTCAT
TGCCTCCGGGCTCAGTGTCGCCACTGGTCCTTCAGGGGAGAGCATCACTCCATCGGTGGG
AGACCCTGCCCCATTGAAGTGCGTGTTCACAAAGTGAAGGGGGGATGAGAGCCGAAGCAA
GGTTTCCTCGGATGCCACCTGTTCCTCCTCCAAGTCCAGGTTTTGCCTTGAGAGGGCTTG
AGGGGGGCCCAGCAGGTCCTCGGGAGGGGCCAGGTCTGTCTCCTCTCCCTCCCCCAGCTC
CCGACTCAGGGCCTCCTCTGGCTCGCTTGGCAGGCTCTGCTGGTCCAAATCCTCTGACAC
ATCAGTCAGCTGTGGAGTCGTCGCCCGGGATACTGAGAAGCCGCCACTTTCCAGTATGGA
AGCCTCCTCGTCTGACAGTTCTGAGTCTGTAATGGCCAAAGCCAATGCTGTTTTCTTTAC
ATCCACCACCGGGGAGAAGCCGGCCAGCTCTGCTTCGCTCTCACTCTCTGTCTCTGCCAG
TGGCTCATCGCCTCCCGGGGGTGCGCTCTTCCCCTGGCGCTTCCTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P1P5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P1P5_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               139-354, - strand, RNAz p=0.923909
               

               
               792-905, - strand, RNAz p=0.975352
               

               
               1102-1335, - strand, RNAz p=0.994316
               

               
               1410-1529, - strand, RNAz p=0.863823

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-354, - strand, RNAz p=0.923909
               

               
               792-905, - strand, RNAz p=0.975352
               

               
               1102-1335, - strand, RNAz p=0.994316
               

               
               1410-1529, - strand, RNAz p=0.863823

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               3' of NM_024293, -
               

               
               3' of NM_024293, -
               

               
               3' of NM_024293, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024293, -
               

               
               3' of NM_024293, -
               

               
               3' of NM_024293, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1551, gnl|bosTau2|chr2 (65126047-65124453)
               

               
               1-1551, gnl|Hg17|chr2 (219873823-219872239)
               

               
               1-1551, gnl|Mm7|chr1 (75371683-75370111)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1551, gnl|bosTau2|chr2 (65126047-65124453)
               

               
               1-1551, gnl|Hg17|chr2 (219873823-219872239)
               

               
               1-1551, gnl|Mm7|chr1 (75371683-75370111)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               col (0.390016)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	139-354, - strand, RNAz p=0.923909
	792-905, - strand, RNAz p=0.975352
	1102-1335, - strand, RNAz p=0.994316
	1410-1529, - strand, RNAz p=0.863823

	1-1551, gnl\|bosTau2\|chr2 (65126047-65124453)
	1-1551, gnl\|Hg17\|chr2 (219873823-219872239)
	1-1551, gnl\|Mm7\|chr1 (75371683-75370111)

	col (0.390016)
	elu (0.385356)
	pgl (0.35545)
	fhi (0.339155)
	cag (0.302389)
	cga (0.279096)
	fce (0.271592)
	ute (0.265569)
	cly (0.241284)
	ebs (0.236602)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	fty (0.17584)
	cki (0.165235)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	med (0.116252)
	cty (0.10408)