Non-Coding RNA Search

Ss1.1-Utr1-UTR01B060085.5

Sequence:


               
               TGGGACCCAACAGGTCATATTCTCATGACATGTGCCAAAGAAGAAAATGTGAAGCTCTGG
GGGCCTATTTCAGGATGCTGGCGCTGTCTACATTCACTCTGCCATCCATCTATTGTAAAC
GGCATTGCTTGGTGCAGCCTTCCGGGGAAAGGATCCAAGTTGCATTTACTGATGGCTACT
GGCTATCAGAGTGGCTTAGTATGTGTTTGGCGTATTCCACAAGATACCACACAGACTAGT
GTGACTAGTTCAGAAGGATGGTGGGACCAGGAATCAAACTGCCAGGGTGCACATAGGAAA
TCAGTTGGAGCCAAGTGTGTTTATCAGTTGCGAGGACACATCACTCCTGTCCGGACCGTT
GCCTTTAGTTCTGATGGGTTGGCCCTGGTGTCTGGTGGACTAGGTGGCCTCATGAACATT
TGGTCTTTAAGGGATGGCTCTGTCTTGCAAACTGTTGTGATTGGCTCCGGAGCTATTCAG
ACGACAGTATGGATTCCAGATGTTGGGGTAGCTGCTTGCTCAAATAGATCAAAGGATGTT
TTGGTTGTGAATTGTACAGCAGAATGGGCTGCAGCCAATCATGTTTTAGCAACTTGTAGG
ACAGCACTGAAACAACAAGGTGTTCTGGGATTAAACATGGCTCCCTGCATGAGAGCGTTT
CTGGAGCGGCTACCCATGATGCTTCAGGAGCAGTATGCCTATGAAAAGCCTCATGTGGTT
TGTGGTGACCAGCTTGTTCATAGCCCCTATATGCAATGTCTGGCTTCCCTTGCTGTGGGA
CTTCATCTGGATCAGCTGCTGTGTAACCCTCCAGTGCCACCACACCACCAGAACTGCCTT
CCTGACCCTGCATCCTGGAATCCAAATGAGTGGGCCTGGTTAGAATGTTTCTCAACCACC
ATAAAAGCCGCTGAAGCCCTGACCAATGGAGCACAGTTTCCAGAATCTTTTAGTGTTCCC
GATCTAGAGCCTGTTCCAGAGGATGAACTTGTATTCCTAATGGATAACAGTAAATGGATT
AATGGCATGGATGAACAAATTATGTCTTGGGCAACTTCGAGACCTGAGGACTGGCACCTG
GGAGGTAAATGTGATGTCTACCTGTGGGGTGCTGGCAGGCATGGACAGCTGGCAGAAGCT
GGAAGAAATGTAATGGTACCTGCAGCAGCTCCCTCATTCTCACAAGCCCAACAGGTCATA
TGTGGTCAGAATTGTACCTTTGTCATCCAGGCCAATGGCACAGTGTTGGCTTGTGGGGAA
GGAAGTTATGGCAGATTAGGACAAGGAAATTCAGATGACCTTCATGTGCTGACAGTTATT
TCAGCCTTACAAGGCTTTGTGGTGACCCAGCTGGTGACTTCCTGTGGTTCTGATGGGCAC
TCCATGGCCCTGACTGAAAGTGGTGAGGTCTTTAGCTGGGGAGATGGTGATTATGGCAAA
CTCGGCCATGGGAACAGCGACAGGCAGCGGCGGCCCAGGCAAATCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGACCCAACAGGTCATATTCTCATGACATGTGCCAAAGAAGAAAATGTGAAGCTCTGG
GGGCCTATTTCAGGATGCTGGCGCTGTCTACATTCACTCTGCCATCCATCTATTGTAAAC
GGCATTGCTTGGTGCAGCCTTCCGGGGAAAGGATCCAAGTTGCATTTACTGATGGCTACT
GGCTATCAGAGTGGCTTAGTATGTGTTTGGCGTATTCCACAAGATACCACACAGACTAGT
GTGACTAGTTCAGAAGGATGGTGGGACCAGGAATCAAACTGCCAGGGTGCACATAGGAAA
TCAGTTGGAGCCAAGTGTGTTTATCAGTTGCGAGGACACATCACTCCTGTCCGGACCGTT
GCCTTTAGTTCTGATGGGTTGGCCCTGGTGTCTGGTGGACTAGGTGGCCTCATGAACATT
TGGTCTTTAAGGGATGGCTCTGTCTTGCAAACTGTTGTGATTGGCTCCGGAGCTATTCAG
ACGACAGTATGGATTCCAGATGTTGGGGTAGCTGCTTGCTCAAATAGATCAAAGGATGTT
TTGGTTGTGAATTGTACAGCAGAATGGGCTGCAGCCAATCATGTTTTAGCAACTTGTAGG
ACAGCACTGAAACAACAAGGTGTTCTGGGATTAAACATGGCTCCCTGCATGAGAGCGTTT
CTGGAGCGGCTACCCATGATGCTTCAGGAGCAGTATGCCTATGAAAAGCCTCATGTGGTT
TGTGGTGACCAGCTTGTTCATAGCCCCTATATGCAATGTCTGGCTTCCCTTGCTGTGGGA
CTTCATCTGGATCAGCTGCTGTGTAACCCTCCAGTGCCACCACACCACCAGAACTGCCTT
CCTGACCCTGCATCCTGGAATCCAAATGAGTGGGCCTGGTTAGAATGTTTCTCAACCACC
ATAAAAGCCGCTGAAGCCCTGACCAATGGAGCACAGTTTCCAGAATCTTTTAGTGTTCCC
GATCTAGAGCCTGTTCCAGAGGATGAACTTGTATTCCTAATGGATAACAGTAAATGGATT
AATGGCATGGATGAACAAATTATGTCTTGGGCAACTTCGAGACCTGAGGACTGGCACCTG
GGAGGTAAATGTGATGTCTACCTGTGGGGTGCTGGCAGGCATGGACAGCTGGCAGAAGCT
GGAAGAAATGTAATGGTACCTGCAGCAGCTCCCTCATTCTCACAAGCCCAACAGGTCATA
TGTGGTCAGAATTGTACCTTTGTCATCCAGGCCAATGGCACAGTGTTGGCTTGTGGGGAA
GGAAGTTATGGCAGATTAGGACAAGGAAATTCAGATGACCTTCATGTGCTGACAGTTATT
TCAGCCTTACAAGGCTTTGTGGTGACCCAGCTGGTGACTTCCTGTGGTTCTGATGGGCAC
TCCATGGCCCTGACTGAAAGTGGTGAGGTCTTTAGCTGGGGAGATGGTGATTATGGCAAA
CTCGGCCATGGGAACAGCGACAGGCAGCGGCGGCCCAGGCAAATCGAG

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-179, gnl|bosTau2|chr10 (31600566-31600388)
               

               
               1-179, gnl|Hg17|chr15 (61724913-61724735)
               

               
               1-179, gnl|Mm7|chr9 (66506269-66506447)
               


               
               283-433, gnl|bosTau2|chr10 (31598413-31598263)
               

               
               283-433, gnl|Hg17|chr15 (61722805-61722655)
               

               
               283-433, gnl|Mm7|chr9 (66509269-66509419)
               


               
               533-708, gnl|bosTau2|chr10 (31596750-31596575)
               

               
               533-708, gnl|Hg17|chr15 (61720897-61720722)
               

               
               533-708, gnl|Mm7|chr9 (66511187-66511362)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr10 (31600566-31600388)
               

               
               1-179, gnl|Hg17|chr15 (61724913-61724735)
               

               
               1-179, gnl|Mm7|chr9 (66506269-66506447)
               


               
               283-433, gnl|bosTau2|chr10 (31598413-31598263)
               

               
               283-433, gnl|Hg17|chr15 (61722805-61722655)
               

               
               283-433, gnl|Mm7|chr9 (66509269-66509419)
               


               
               533-708, gnl|bosTau2|chr10 (31596750-31596575)
               

               
               533-708, gnl|Hg17|chr15 (61720897-61720722)
               

               
               533-708, gnl|Mm7|chr9 (66511187-66511362)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-179, gnl\|bosTau2\|chr10 (31600566-31600388)
	1-179, gnl\|Hg17\|chr15 (61724913-61724735)
	1-179, gnl\|Mm7\|chr9 (66506269-66506447)

	283-433, gnl\|bosTau2\|chr10 (31598413-31598263)
	283-433, gnl\|Hg17\|chr15 (61722805-61722655)
	283-433, gnl\|Mm7\|chr9 (66509269-66509419)

	533-708, gnl\|bosTau2\|chr10 (31596750-31596575)
	533-708, gnl\|Hg17\|chr15 (61720897-61720722)
	533-708, gnl\|Mm7\|chr9 (66511187-66511362)