Non-Coding RNA Search

Ss1.1-Utr1-UTR01B060089.5

Sequence:


               
               TAAATTATTGACTGGCTACCCTTGTAAATGGTTTTAGGACATTTGTATTCTTGGCTGCTT
TTGTTGAAACCCATTCTTCATTTCATGAAAGCTCCCTGATAAGCCCAGGGTTGTCAGGAA
GCTGTGTGCTCAAACTGTAGCAGAAGTCTATGCTGTCTGTGACAATACGACTTCAGATCC
TCCTCTGTTTGGGTTTATGACCAAGATCTTTTATTTTGTGATCCGTGTCAGCATCATTAA
CCTGATAAGGCAAAGCACAATCCCTAAAAGCACATCCGAGAAGCTGAAGAAGTGGGACAG
CATGGAAACCAGCTAAATCAGGTCAAGGACAAAATATGCCCCTCCGCTTAGCCAAACTCC
CCCCACTTTGTTTTCACTTTCAGCGTCCCTCCATATTCCACCTCCCCTTTTGCCCTCTTT
TTCCTTTCTTCCGCTCATCCTTGCATCCCTCCCTCAGATGCTTTTTGTCCTTTGATTTCT
CCTTTTCCTCCCAAACCTGTGGTGTTTTGTGTGACTTGCACCTTCCACGGGTCCCAGAAC
TCAGTGCCACTCTTAAAGGCAAGGTCATGCACACGGGTAGCGAGGTATACTAACGTGTCG
ATGAGCCTCCCTGCAACAGTCACTGGGAGCTGATGAAGTGGGGGTGGCCCTGGAGTGGGG
AGTTATCATTTGGTGTTTCCAGCTTGGCTGTGTAGCCCCTGACCGCTTTTCTAAAGGGAG
AAATCACCCCTTATGTACAAGTGTAGTGGGGTGCAGTATCCACTCCCACTGTGGATGCTG
AAGTGGGGAAATCTTCCTTGTCTCTCAGATGTACCCCCTTTTCCAGCACCAGCCAGGCCA
GGGAGTGGCCAGTGACCCAGGGTGAACTCCTGGGACTCCCCTGCTTGGGACTGTGAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATTATTGACTGGCTACCCTTGTAAATGGTTTTAGGACATTTGTATTCTTGGCTGCTT
TTGTTGAAACCCATTCTTCATTTCATGAAAGCTCCCTGATAAGCCCAGGGTTGTCAGGAA
GCTGTGTGCTCAAACTGTAGCAGAAGTCTATGCTGTCTGTGACAATACGACTTCAGATCC
TCCTCTGTTTGGGTTTATGACCAAGATCTTTTATTTTGTGATCCGTGTCAGCATCATTAA
CCTGATAAGGCAAAGCACAATCCCTAAAAGCACATCCGAGAAGCTGAAGAAGTGGGACAG
CATGGAAACCAGCTAAATCAGGTCAAGGACAAAATATGCCCCTCCGCTTAGCCAAACTCC
CCCCACTTTGTTTTCACTTTCAGCGTCCCTCCATATTCCACCTCCCCTTTTGCCCTCTTT
TTCCTTTCTTCCGCTCATCCTTGCATCCCTCCCTCAGATGCTTTTTGTCCTTTGATTTCT
CCTTTTCCTCCCAAACCTGTGGTGTTTTGTGTGACTTGCACCTTCCACGGGTCCCAGAAC
TCAGTGCCACTCTTAAAGGCAAGGTCATGCACACGGGTAGCGAGGTATACTAACGTGTCG
ATGAGCCTCCCTGCAACAGTCACTGGGAGCTGATGAAGTGGGGGTGGCCCTGGAGTGGGG
AGTTATCATTTGGTGTTTCCAGCTTGGCTGTGTAGCCCCTGACCGCTTTTCTAAAGGGAG
AAATCACCCCTTATGTACAAGTGTAGTGGGGTGCAGTATCCACTCCCACTGTGGATGCTG
AAGTGGGGAAATCTTCCTTGTCTCTCAGATGTACCCCCTTTTCCAGCACCAGCCAGGCCA
GGGAGTGGCCAGTGACCCAGGGTGAACTCCTGGGACTCCCCTGCTTGGGACTGTGAGCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-201, + strand, RNAz p=0.938063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-201, + strand, RNAz p=0.938063

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-897, gnl|bosTau2|chr28 (3700032-3699154)
               

               
               3-897, gnl|Hg17|chr1 (232039105-232037884)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-897, gnl|bosTau2|chr28 (3700032-3699154)
               

               
               3-897, gnl|Hg17|chr1 (232039105-232037884)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	3-897, gnl\|bosTau2\|chr28 (3700032-3699154)
	3-897, gnl\|Hg17\|chr1 (232039105-232037884)