Ss1.1-Utr1-UTR01B070092.5.5
|
AGTTCGATCGGTAGCGGGAGCGGAGAGCGGACCCCAGAGAGCCCTGAGCAGCCCCACCGC
CGCCGCCGGCCTAGTTACCATCACACCCCGGGAGGAGCCGCAGCTGCCGCAGCCGGCCCC
AGTCACCATCACCGCAACCATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCTGCCGCCCC
CCCCGCCGCCCCCGCCCTCAGCGCTGCCGACACCAAGCCCGGCACGACGGGCAGCGGCGC
AGGGAGCGGCGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGGT
CATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTAAGAAACGGATATGGTTT
CATCAACAGGAATGACACCAAGGAAGACGTATTTGTACACCAGACTGCCATAAAGAAGAA
TAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGT
TGAAGGAGAAAAGGGTGCGGAGGCAGCAAACGTTACAGGCCCTGGTGGAGTTCCAGTGCA
AGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGCAGGGGTCC
TCCACGCAATTACCAGCAGAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATC
AGAGAGTGCTCCCGAAGGCCAGGCCCAACAGCGCCGGCCCTACCGCAGGCGAAGGTTCCC
ACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCA
GGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAG
ACAGAATGTGTACCGGGGCTACAGACCACGCTTCCGCAGGGGCCCTCCTCGCCAAAGACA
ACCCCGAGAGGACGGCAATGAAGAGGACAAGGAAAATCAAGGAGACGAGACCCAGGGTCA
GCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGGCGCAGACGCCCAGAAAA
CCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTC
CGCTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAAACGCCGGCTTTTACCATCTCTACCAT
CATCCGGTTTAGTCATCCACCAAGAAGACTGAATATGAAATTCCAGCAATAAGAAATGAA
CAAAAGATTGGAGCTGAAGACCTTAAGTGCTTGCTTTTTGCCTGTTGACCAGATAACTAG
AACTATCTGCATTATCTATGCAGCATGGGGTTTTTATTATTTTTACCTAAAGATGTCTCT
TTTTGGTAATGACAAACGTGTTTTTTAAAAAAAAAAAAAAGGCCTGGTTTTTCTCAATAC
ACCTTTAAAGGTTTTTAAATTGTTTCATATCTGGTCAAGTTGAGATTTTTAAGAACCTCA
TTTTTAATTTGTAATAAAAGTTTACAGCTTGATTTTTTCAAAAAAAAAAAAAAGTCAACA
AACTGCAAGCACCTGTTAATAAAGGTCTTAAATAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTTCGATCGGTAGCGGGAGCGGAGAGCGGACCCCAGAGAGCCCTGAGCAGCCCCACCGC
CGCCGCCGGCCTAGTTACCATCACACCCCGGGAGGAGCCGCAGCTGCCGCAGCCGGCCCC
AGTCACCATCACCGCAACCATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCTGCCGCCCC
CCCCGCCGCCCCCGCCCTCAGCGCTGCCGACACCAAGCCCGGCACGACGGGCAGCGGCGC
AGGGAGCGGCGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGGT
CATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTAAGAAACGGATATGGTTT
CATCAACAGGAATGACACCAAGGAAGACGTATTTGTACACCAGACTGCCATAAAGAAGAA
TAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGT
TGAAGGAGAAAAGGGTGCGGAGGCAGCAAACGTTACAGGCCCTGGTGGAGTTCCAGTGCA
AGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGCAGGGGTCC
TCCACGCAATTACCAGCAGAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATC
AGAGAGTGCTCCCGAAGGCCAGGCCCAACAGCGCCGGCCCTACCGCAGGCGAAGGTTCCC
ACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCA
GGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAG
ACAGAATGTGTACCGGGGCTACAGACCACGCTTCCGCAGGGGCCCTCCTCGCCAAAGACA
ACCCCGAGAGGACGGCAATGAAGAGGACAAGGAAAATCAAGGAGACGAGACCCAGGGTCA
GCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGGCGCAGACGCCCAGAAAA
CCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTC
CGCTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAAACGCCGGCTTTTACCATCTCTACCAT
CATCCGGTTTAGTCATCCACCAAGAAGACTGAATATGAAATTCCAGCAATAAGAAATGAA
CAAAAGATTGGAGCTGAAGACCTTAAGTGCTTGCTTTTTGCCTGTTGACCAGATAACTAG
AACTATCTGCATTATCTATGCAGCATGGGGTTTTTATTATTTTTACCTAAAGATGTCTCT
TTTTGGTAATGACAAACGTGTTTTTTAAAAAAAAAAAAAAGGCCTGGTTTTTCTCAATAC
ACCTTTAAAGGTTTTTAAATTGTTTCATATCTGGTCAAGTTGAGATTTTTAAGAACCTCA
TTTTTAATTTGTAATAAAAGTTTACAGCTTGATTTTTTCAAAAAAAAAAAAAAGTCAACA
AACTGCAAGCACCTGTTAATAAAGGTCTTAAATAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
13-1543, gnl|bosTau2|chr7 (64921291-64922784) |
|
13-1543, gnl|Hg17|chr9 (35962442-35960926) |
|
13-1543, gnl|Mm7|chr11 (100041070-100043087) |
| |
|
288-681, gnl|bosTau2|chr18 (23762483-23762097) |
|
288-681, gnl|Hg17|chr9 (35962166-35961734) |
|
288-681, gnl|Mm7|chr11 (100041320-100041753) |
| |
|
343-678, gnl|bosTau2|chr16 (13703018-13703344) |
|
343-678, gnl|Hg17|chr9 (35962111-35961777) |
|
343-678, gnl|Mm7|chr17 (20104061-20103725) |
| |
|
1020-1489, gnl|bosTau2|chr11 (69860453-69860910) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
13-1543, gnl|bosTau2|chr7 (64921291-64922784) |
|
13-1543, gnl|Hg17|chr9 (35962442-35960926) |
|
13-1543, gnl|Mm7|chr11 (100041070-100043087) |
| |
|
288-681, gnl|bosTau2|chr18 (23762483-23762097) |
|
288-681, gnl|Hg17|chr9 (35962166-35961734) |
|
288-681, gnl|Mm7|chr11 (100041320-100041753) |
| |
|
343-678, gnl|bosTau2|chr16 (13703018-13703344) |
|
343-678, gnl|Hg17|chr9 (35962111-35961777) |
|
343-678, gnl|Mm7|chr17 (20104061-20103725) |
| |
|
1020-1489, gnl|bosTau2|chr11 (69860453-69860910) |
|
tes (8.10474) |
|
cte (3.80562) |
|
ldo (3.29809) |
|
hea (3.27198) |
|
tbr (3.23774) |
|
che (3.13522) |
|
ssp (2.57487) |
|
sme (2.44349) |
|
cut (2.37893) |
|
thg (1.64828) |
|
lnt (1.56539) |
|
eye (1.53453) |
|
ebs (1.41961) |
|
csk (1.40746) |
|
bla (1.36782) |
|
fce (1.35796) |
|
isp (1.35338) |
|
ova (1.29132) |
|
sto (1.25877) |
|
amn (1.25313) |
|
col (1.17005) |
|
cmu (1.11836) |
|
cty (1.0408) |
|
ecc (1.03532) |
|
bfe (0.899146) |
|
ese (0.885516) |
|
fat (0.884564) |
|
rec (0.865351) |
|
tra (0.861645) |
|
cst (0.840218) |
|
hlv (0.835538) |
|
cje (0.826173) |
|
med (0.813764) |
|
ste (0.811249) |
|
jca (0.797721) |
|
ski (0.733676) |
|
fty (0.703359) |
|
nbm (0.695272) |
|
mgp (0.692042) |
|
vin (0.665115) |
|
cki (0.660939) |
|
mga (0.64082) |
|
sug (0.636456) |
|
eru (0.60024) |
|
fcc (0.593354) |
|
liv (0.585137) |
|
pty (0.570858) |
|
sag (0.548145) |
|
gul (0.532765) |
|
fbs (0.526039) |
|
sin (0.524843) |
|
eje (0.494169) |
|
nco (0.485201) |
|
lin (0.436808) |
|
mas (0.42061) |
|
ute (0.398353) |
|
jej (0.395687) |
|
aor (0.390549) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
spc (0.340097) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
cag (0.302389) |
|
lun (0.300978) |
|
spl (0.286369) |
|
nca (0.273748) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ret (0.257467) |
|
cly (0.241284) |
|
ece (0.229305) |
|
nms (0.213858) |
|
fli (0.202881) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
nmm (0.132802) |
|
tes (8.10474) |
|
cte (3.80562) |
|
ldo (3.29809) |
|
hea (3.27198) |
|
tbr (3.23774) |
|
che (3.13522) |
|
ssp (2.57487) |
|
sme (2.44349) |
|
cut (2.37893) |
|
thg (1.64828) |
|
lnt (1.56539) |
|
eye (1.53453) |
|
ebs (1.41961) |
|
csk (1.40746) |
|
bla (1.36782) |
|
fce (1.35796) |
|
isp (1.35338) |
|
ova (1.29132) |
|
sto (1.25877) |
|
amn (1.25313) |
|
col (1.17005) |
|
cmu (1.11836) |
|
cty (1.0408) |
|
ecc (1.03532) |
|
bfe (0.899146) |
|
ese (0.885516) |
|
fat (0.884564) |
|
rec (0.865351) |
|
tra (0.861645) |
|
cst (0.840218) |
|
hlv (0.835538) |
|
cje (0.826173) |
|
med (0.813764) |
|
ste (0.811249) |
|
jca (0.797721) |
|
ski (0.733676) |
|
fty (0.703359) |
|
nbm (0.695272) |
|
mgp (0.692042) |
|
vin (0.665115) |
|
cki (0.660939) |
|
mga (0.64082) |
|
sug (0.636456) |
|
eru (0.60024) |
|
fcc (0.593354) |
|
liv (0.585137) |
|
pty (0.570858) |
|
sag (0.548145) |
|
gul (0.532765) |
|
fbs (0.526039) |
|
sin (0.524843) |
|
eje (0.494169) |
|
nco (0.485201) |
|
lin (0.436808) |
|
mas (0.42061) |
|
ute (0.398353) |
|
jej (0.395687) |
|
aor (0.390549) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
spc (0.340097) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
cag (0.302389) |
|
lun (0.300978) |
|
spl (0.286369) |
|
nca (0.273748) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ret (0.257467) |
|
cly (0.241284) |
|
ece (0.229305) |
|
nms (0.213858) |
|
fli (0.202881) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
nmm (0.132802) |
