Ss1.1-Utr1-UTR01B090087.5
|
AGAAAGTCCCCCTCATCCCAAAGTTGCTCACCAACGCACCTGCTGCAGGTGCCTGGGGCT
CCATGGTGATGGCGTTGTGTCTTTGGGCGTCGCCCTCTTTCCTAGAATGAGCACGTGCCC
TCGAAGGTGCTCGGAGCGGGAAGAGAGCCCAGCAGGTGCAGCCGTGGGGGCAGGTGGCAG
ACAGGCCTTGTCCTTGCAGCCTGGCTTGCTTCCAGGGCACCCCCGCCCCAACCCTGTGGT
GTGCTGCACGACCCTGGGCACATTCCAATCTTGGGGCCTCAGTGACCCCATCTGTAAAGT
GGCAGGGACCCCATAAAGAGCTATATGGGCCTGAGCCCCCCTCTTTAGGATTCTGTAAGT
ATAGACACACCGCAGGTTCTGGAAGATGTAGTCTGGACCAGCGCTGCTTCTTCCACTTGC
CAAGTATACAGCTGTACCTACCCATCTGTGTGCATACCTGTACATAGGCTTAGTGTCTCA
AAGCAGAGGGCGATATTCGGCCATCGGATGTCCCCGTTCCCAGGGGAGAGGGCTGATCCC
TAGGCACTGGCTCCACTGGACAGAGCCTGCTGTTGCAGAATGAAGGCCTTGAAGGGGCGA
GGGAGGGATGACCGTGTTCCTTCATGAGTTGTGGTTGGTCTTTTCCACCCATCACTGCAC
CACCCCCATCATCACGCAGTTTTTCCCTCTTCCTGCCAGTGTAGACGCAGGCCACCGTGT
GCAGGTGCATTTATTAAAGGGCACTGGGTCATCTGAAGGTTATCAAACCTGAGGACAGAT
AATCGTGATTGGGATCAGCCCTCGGAGGCCGACGCCCTGGCTGGATGCTGAGGGGAATTT
TCAGGTCCCAGCTGATCCTACGGGGTGGGGAGCAGCAGCCCCCCCATTCCCAAGCTCCCG
AGCGGAGGCCTTGGGCAGCTGGGTGACCTGCACGGCTCCCCAGGCCATAGCCTTCCCTCC
TCATTTGTTTGGAGGGAGAGCTGGTTTTGACCCGATGAAGTAGCTCTCTATGGCTGCAGC
CCCAGAGCAATTCAGAGCACAGTCTGCTTGGGGCCAGCTATCTACACGTCCGTTCAATTC
CACCAGGGCCAGAGCAGGTCCTCCCATGTGCCCGTGGCCATTGACTGTGACAAAAACGGA
GAGACGCAATGCACAGGTATCTGGAAGCAGCAGGACAATCAGGAGGCCCTTGATGGTCAC
GACCCCTCATGACATCCGCACACTCCCTTCTCCCTTTCCTAGCAAAACCTTCTAGCCCAT
TTAACAGCTAAAGAAACTGAGGCCAGGACCCACAGCTAGATCATGATTTGGCCAGGCCTC
CTAGCTGCCAGGGCCATGTCTCTGGCTACTCCTTGGACCGGGAGACTGGCCCCTCTCTTT
CCCAGCTTCTGCATTTCCGCCTGGGCAATGGCCAGGGGCCAGGAGCGGGGAGGGTTGTGC
TGCAGGGGGGCGGGGGGGGGCGGTGGTCAGACCCATCCTGTCCTGTCCTGGCTGCTGCCT
TCCAGGACCCTGCATCTGTCTGCTCTGCGTATATGGCTCTTTGGAATTGGAATTACATCA
TATGTTAAGAAAATAAAGAATAAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAAAGTCCCCCTCATCCCAAAGTTGCTCACCAACGCACCTGCTGCAGGTGCCTGGGGCT
CCATGGTGATGGCGTTGTGTCTTTGGGCGTCGCCCTCTTTCCTAGAATGAGCACGTGCCC
TCGAAGGTGCTCGGAGCGGGAAGAGAGCCCAGCAGGTGCAGCCGTGGGGGCAGGTGGCAG
ACAGGCCTTGTCCTTGCAGCCTGGCTTGCTTCCAGGGCACCCCCGCCCCAACCCTGTGGT
GTGCTGCACGACCCTGGGCACATTCCAATCTTGGGGCCTCAGTGACCCCATCTGTAAAGT
GGCAGGGACCCCATAAAGAGCTATATGGGCCTGAGCCCCCCTCTTTAGGATTCTGTAAGT
ATAGACACACCGCAGGTTCTGGAAGATGTAGTCTGGACCAGCGCTGCTTCTTCCACTTGC
CAAGTATACAGCTGTACCTACCCATCTGTGTGCATACCTGTACATAGGCTTAGTGTCTCA
AAGCAGAGGGCGATATTCGGCCATCGGATGTCCCCGTTCCCAGGGGAGAGGGCTGATCCC
TAGGCACTGGCTCCACTGGACAGAGCCTGCTGTTGCAGAATGAAGGCCTTGAAGGGGCGA
GGGAGGGATGACCGTGTTCCTTCATGAGTTGTGGTTGGTCTTTTCCACCCATCACTGCAC
CACCCCCATCATCACGCAGTTTTTCCCTCTTCCTGCCAGTGTAGACGCAGGCCACCGTGT
GCAGGTGCATTTATTAAAGGGCACTGGGTCATCTGAAGGTTATCAAACCTGAGGACAGAT
AATCGTGATTGGGATCAGCCCTCGGAGGCCGACGCCCTGGCTGGATGCTGAGGGGAATTT
TCAGGTCCCAGCTGATCCTACGGGGTGGGGAGCAGCAGCCCCCCCATTCCCAAGCTCCCG
AGCGGAGGCCTTGGGCAGCTGGGTGACCTGCACGGCTCCCCAGGCCATAGCCTTCCCTCC
TCATTTGTTTGGAGGGAGAGCTGGTTTTGACCCGATGAAGTAGCTCTCTATGGCTGCAGC
CCCAGAGCAATTCAGAGCACAGTCTGCTTGGGGCCAGCTATCTACACGTCCGTTCAATTC
CACCAGGGCCAGAGCAGGTCCTCCCATGTGCCCGTGGCCATTGACTGTGACAAAAACGGA
GAGACGCAATGCACAGGTATCTGGAAGCAGCAGGACAATCAGGAGGCCCTTGATGGTCAC
GACCCCTCATGACATCCGCACACTCCCTTCTCCCTTTCCTAGCAAAACCTTCTAGCCCAT
TTAACAGCTAAAGAAACTGAGGCCAGGACCCACAGCTAGATCATGATTTGGCCAGGCCTC
CTAGCTGCCAGGGCCATGTCTCTGGCTACTCCTTGGACCGGGAGACTGGCCCCTCTCTTT
CCCAGCTTCTGCATTTCCGCCTGGGCAATGGCCAGGGGCCAGGAGCGGGGAGGGTTGTGC
TGCAGGGGGGCGGGGGGGGGCGGTGGTCAGACCCATCCTGTCCTGTCCTGGCTGCTGCCT
TCCAGGACCCTGCATCTGTCTGCTCTGCGTATATGGCTCTTTGGAATTGGAATTACATCA
TATGTTAAGAAAATAAAGAATAAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1405-1548, + strand, RNAmicro p=0.99577 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1405-1548, + strand, RNAmicro p=0.99577 |
|
1-780, gnl|bosTau2|chr4 (36123011-36122246) |
|
1-780, gnl|Hg17|chr7 (30736796-30737582) |
|
1-780, gnl|Mm7|chr6 (55310464-55311168) |
| |
|
795-1577, gnl|bosTau2|chr4 (36122264-36121509) |
|
795-1577, gnl|canFam2|chr14 (46559670-46560828) |
|
795-1577, gnl|dasNov1|scaffold_8224 (4048-5046) |
|
795-1577, gnl|echTel1|scaffold_318513 (37548-36551) |
|
795-1577, gnl|hg17|chr7 (30736975-30738116) |
|
795-1577, gnl|Hg17|chr7 (30737564-30738355) |
|
795-1577, gnl|mm7|chr6 (55310617-55311661) |
|
795-1577, gnl|Mm7|chr6 (55311152-55311905) |
|
795-1577, gnl|panTro1|chr6 (31840909-31842050) |
|
795-1577, gnl|rheMac2|chr3 (95299257-95298123) |
|
795-1577, gnl|rn3|chr4 (84395685-84396720) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-780, gnl|bosTau2|chr4 (36123011-36122246) |
|
1-780, gnl|Hg17|chr7 (30736796-30737582) |
|
1-780, gnl|Mm7|chr6 (55310464-55311168) |
| |
|
795-1577, gnl|bosTau2|chr4 (36122264-36121509) |
|
795-1577, gnl|canFam2|chr14 (46559670-46560828) |
|
795-1577, gnl|dasNov1|scaffold_8224 (4048-5046) |
|
795-1577, gnl|echTel1|scaffold_318513 (37548-36551) |
|
795-1577, gnl|hg17|chr7 (30736975-30738116) |
|
795-1577, gnl|Hg17|chr7 (30737564-30738355) |
|
795-1577, gnl|mm7|chr6 (55310617-55311661) |
|
795-1577, gnl|Mm7|chr6 (55311152-55311905) |
|
795-1577, gnl|panTro1|chr6 (31840909-31842050) |
|
795-1577, gnl|rheMac2|chr3 (95299257-95298123) |
|
795-1577, gnl|rn3|chr4 (84395685-84396720) |
|
jca (0.45584) |
|
cov (0.264306) |
|
eep (0.245128) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nca (0.136874) |
|
ese (0.126502) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
jca (0.45584) |
|
cov (0.264306) |
|
eep (0.245128) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nca (0.136874) |
|
ese (0.126502) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
