Ss1.1-Utr1-UTR01B100101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGATGGACGCAGCTACTCTGACCTACGACACCCTCCGATTTGCCGAGTTTGAAGACTT CCCCGAGACCTCAGAACCTGTTTGGATCCTGGGCAGAAAGTACAGCATCTTCACAGAAAA GGACGAGATCTTGGCTGATGTGGCGTCAAGACTGTGGTTTACGTACAGGAAGAACTTCCC GGCCATTGGGGGGACGGGCCCCACCTCGGACACAGGCTGGGGCTGCATGCTGCGCTGTGG CCAGATGATCTTCGCCCAGGCTCTGCTGTGCAGACACCTGGGCCGAGGCTGGAGGTGGAC GCAGTGGGAGAGGCAGCCGGACAGCTACTTCAGTGTCCTGCACGCGTTCATGGACAGGAA GGACAGCTACTACTCCATCCACCAGATAGCGCAAATGGGAGTCGGCGAGGGCAAGTCTAT CGGCCAGTGGTATGGGCCCAACACCGTCGCCCAGGTTCTCAAGAAGCTTGCCGCCTTCGA CACCTGGAGCGCCTTGGCCGTGCACGTCGCCATGGACAACACGGTGGTGATGGAGGAGAT CAGAAGACTGTGCAGGAGCAGCCTTCCTCGCGCGGGCCCTCCGCTTCCATCGATGTTCCA CCCAGAGGCGGTTGCCCGGGATCCTGTTTTGCCTAAAGAAGCCCTTGAGAGCGGGCCTGG AGTGCGAGCCTGCGACTCCCTGGGGCGATGCGGCCAGAGTGCCCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGATGGACGCAGCTACTCTGACCTACGACACCCTCCGATTTGCCGAGTTTGAAGACTT CCCCGAGACCTCAGAACCTGTTTGGATCCTGGGCAGAAAGTACAGCATCTTCACAGAAAA GGACGAGATCTTGGCTGATGTGGCGTCAAGACTGTGGTTTACGTACAGGAAGAACTTCCC GGCCATTGGGGGGACGGGCCCCACCTCGGACACAGGCTGGGGCTGCATGCTGCGCTGTGG CCAGATGATCTTCGCCCAGGCTCTGCTGTGCAGACACCTGGGCCGAGGCTGGAGGTGGAC GCAGTGGGAGAGGCAGCCGGACAGCTACTTCAGTGTCCTGCACGCGTTCATGGACAGGAA GGACAGCTACTACTCCATCCACCAGATAGCGCAAATGGGAGTCGGCGAGGGCAAGTCTAT CGGCCAGTGGTATGGGCCCAACACCGTCGCCCAGGTTCTCAAGAAGCTTGCCGCCTTCGA CACCTGGAGCGCCTTGGCCGTGCACGTCGCCATGGACAACACGGTGGTGATGGAGGAGAT CAGAAGACTGTGCAGGAGCAGCCTTCCTCGCGCGGGCCCTCCGCTTCCATCGATGTTCCA CCCAGAGGCGGTTGCCCGGGATCCTGTTTTGCCTAAAGAAGCCCTTGAGAGCGGGCCTGG AGTGCGAGCCTGCGACTCCCTGGGGCGATGCGGCCAGAGTGCCCTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 286-389, - strand, RNAz p=0.611483 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 286-389, - strand, RNAz p=0.611483 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 13-116, gnl|bosTau2|chr14 (8129491-8129594) | |
| 13-116, gnl|canFam2|chr25 (54436318-54436465) | |
| 13-116, gnl|canFam2|chr25 (54436318-54436465) | |
| 13-116, gnl|fr1|chrUn (247396257-247396146) | |
| 13-116, gnl|fr1|chrUn (247396257-247396146) | |
| 13-116, gnl|hg17|chr2 (242310370-242310519) | |
| 13-116, gnl|Hg17|chr2 (242310413-242310516) | |
| 13-116, gnl|hg17|chr2_random (300763-300912) | |
| 13-116, gnl|loxAfr1|scaffold_19868 (30627-30478) | |
| 13-116, gnl|loxAfr1|scaffold_19868 (30627-30478) | |
| 13-116, gnl|mm7|chr1 (93675826-93675966) | |
| 13-116, gnl|mm7|chr1 (93675826-93675966) | |
| 13-116, gnl|Mm7|chr1 (93675860-93675963) | |
| 13-116, gnl|oryCun1|scaffold_158884 (4402-4551) | |
| 13-116, gnl|oryCun1|scaffold_158884 (4402-4551) | |
| 13-116, gnl|panTro1|chr13 (133791688-133791837) | |
| 13-116, gnl|panTro1|chr13 (133791688-133791837) | |
| 13-116, gnl|rheMac2|chr12 (105575763-105575912) | |
| 13-116, gnl|rheMac2|chr12 (105575763-105575912) | |
| 13-116, gnl|rn3|chr9 (93249218-93249360) | |
| 13-116, gnl|rn3|chr9 (93249218-93249360) | |
| 13-116, gnl|tetNig1|chrUn_random (88731956-88732062) | |
| 13-116, gnl|tetNig1|chrUn_random (88731956-88732062) | |
| 286-389, gnl|bosTau2|chr14 (8131310-8131413) | |
| 286-389, gnl|Hg17|chr2 (242313949-242314052) | |
| 286-389, gnl|Mm7|chr1 (93682940-93683043) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-116, gnl|bosTau2|chr14 (8129491-8129594) | |
| 13-116, gnl|canFam2|chr25 (54436318-54436465) | |
| 13-116, gnl|canFam2|chr25 (54436318-54436465) | |
| 13-116, gnl|fr1|chrUn (247396257-247396146) | |
| 13-116, gnl|fr1|chrUn (247396257-247396146) | |
| 13-116, gnl|hg17|chr2 (242310370-242310519) | |
| 13-116, gnl|Hg17|chr2 (242310413-242310516) | |
| 13-116, gnl|hg17|chr2_random (300763-300912) | |
| 13-116, gnl|loxAfr1|scaffold_19868 (30627-30478) | |
| 13-116, gnl|loxAfr1|scaffold_19868 (30627-30478) | |
| 13-116, gnl|mm7|chr1 (93675826-93675966) | |
| 13-116, gnl|mm7|chr1 (93675826-93675966) | |
| 13-116, gnl|Mm7|chr1 (93675860-93675963) | |
| 13-116, gnl|oryCun1|scaffold_158884 (4402-4551) | |
| 13-116, gnl|oryCun1|scaffold_158884 (4402-4551) | |
| 13-116, gnl|panTro1|chr13 (133791688-133791837) | |
| 13-116, gnl|panTro1|chr13 (133791688-133791837) | |
| 13-116, gnl|rheMac2|chr12 (105575763-105575912) | |
| 13-116, gnl|rheMac2|chr12 (105575763-105575912) | |
| 13-116, gnl|rn3|chr9 (93249218-93249360) | |
| 13-116, gnl|rn3|chr9 (93249218-93249360) | |
| 13-116, gnl|tetNig1|chrUn_random (88731956-88732062) | |
| 13-116, gnl|tetNig1|chrUn_random (88731956-88732062) | |
| 286-389, gnl|bosTau2|chr14 (8131310-8131413) | |
| 286-389, gnl|Hg17|chr2 (242313949-242314052) | |
| 286-389, gnl|Mm7|chr1 (93682940-93683043) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| med (0.116252) |