Non-Coding RNA Search

Ss1.1-Utr1-UTR01C020106.5

Sequence:


               
               ATTTTCCGGGGCAGGGAGCCACCCAGCCCTGTGCAGTTAAGAGTTTGTCCGCATACTGGC
ACGGTAAGGGCGGAAGTACGGGAACTGGAGTCTCTAGCTTTTCGGGCTGTGGCGAGGCGA
CTGATACGAGATGGAGACAGGCGCGGCCGGGGAAGGTGGTCTGAACGGCCCCCGGGGGCG
GCGAGTCTTGGATGAAGCAGAGAGGCCGCAGCTGAACCATGAAGTGCAGCCTCAGTCCGG
AGCAAACAGCTGTCCCAAACATTCCTACTGGTTGGATCTCTGGCTCTTCATCCTCTTCGA
CCTGGTATTGTTTTTCTTCGTGTATTTTTTGCCATGATGGTTCTCCTGATAGCTAAATGA
TTTTGGGCTCCTGGAGTGGATCCTGAAAGTGACTACACACAACAAAGAAGATTGTGCAGC
AGAAGAATTTCAAATTCTAAGGGACCTTCCTTTCATTTCACACATTCTCTTATTCTTTTG
GGGCACTATATTAAATTGGTAATGATCTCATCCATTCAGAGCTGTTCCGAAAACTAGACT
CCGATTTCTGTTTAAAACCTTTTCAAATATCTGATGTCTTTACAGAAGCTGAATATAAAA
GTATTTCTACATAAAGATTTACTGTGCTTATTAGGAAATACATTAATGTTTTTAACATTT
TAAGGGTTAGCCAGGATTTAAATTAAGTGAACCTTGTTATGGTTGCCAGATTGGTACAGT
CTTAGAGCAAGTATATAACATGCAATAATGGAAAGCTAGAGTGCATGTCCTCTTACCTGG
ATGCTTCCCCTCATTTGCTTTTAAGCTTTGGTGTGTTTCAAACCTATTTTTATTATTGTG
GTTGCATTGAGAATGGTTGTGGCCAAAACAAGTTTTTAATAATGTCTGTAACTTATTTCA
GCAAAGTCAGCATATTTACTCATTAACAGATATGTGAGCAGATATTTGGACCAGGTACAA
CAGTTAACCAAACCAACAAAAATTCTTGCCTTCATGGAGCTTACATTCTTACTTTTTATC
TAAATTCATTAATATGTTAAATGTTATTCTAGGAGTGATCAGCTAGTGTGTAATCAGAAA
GGTCACACTCCCAAAGCAGCTACTCTAAGTCTTCAGAATCATTAATATGTTAAATGTTAT
TCTAGGAGTGATCAGCTAGTGTTTAATCAGAAAGGTCACACTCCCAAAGCAGCTACTCTA
TTATGTAACAGACATCAGAAATGACCTGTCCTTATTATAGGGGTTTCCTTATAATGGGGT
GATGTGTTATATATTGGAATTGTCAAATAGTTTGGGGATATTCCCCTCCCTCAGAAACAG
GGCATAGATCAGATGAACTCTATCTACATCCTTTACTTTTTAGAATGGCATTTAGGTTAG
CATAAAAGCTGGAATGATTTTGGAGGATTTTAGCCTAATGCTAACTATAAGGTTAATAAT
TATGCCTTCAGAGTATTGTTCCATCTGCCTGAAGAAACCTTTTATGCAAAAGTTGAAGCA
TCAAGAGAAAACAGAACTGGGATTTCATTGAGGATACCAAGCAGATTGTATGAATTATTT
TTGTGCTGCTTGATAATACTTTTGTCCAATAAATGTTTATTGTACAGGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCCGGGGCAGGGAGCCACCCAGCCCTGTGCAGTTAAGAGTTTGTCCGCATACTGGC
ACGGTAAGGGCGGAAGTACGGGAACTGGAGTCTCTAGCTTTTCGGGCTGTGGCGAGGCGA
CTGATACGAGATGGAGACAGGCGCGGCCGGGGAAGGTGGTCTGAACGGCCCCCGGGGGCG
GCGAGTCTTGGATGAAGCAGAGAGGCCGCAGCTGAACCATGAAGTGCAGCCTCAGTCCGG
AGCAAACAGCTGTCCCAAACATTCCTACTGGTTGGATCTCTGGCTCTTCATCCTCTTCGA
CCTGGTATTGTTTTTCTTCGTGTATTTTTTGCCATGATGGTTCTCCTGATAGCTAAATGA
TTTTGGGCTCCTGGAGTGGATCCTGAAAGTGACTACACACAACAAAGAAGATTGTGCAGC
AGAAGAATTTCAAATTCTAAGGGACCTTCCTTTCATTTCACACATTCTCTTATTCTTTTG
GGGCACTATATTAAATTGGTAATGATCTCATCCATTCAGAGCTGTTCCGAAAACTAGACT
CCGATTTCTGTTTAAAACCTTTTCAAATATCTGATGTCTTTACAGAAGCTGAATATAAAA
GTATTTCTACATAAAGATTTACTGTGCTTATTAGGAAATACATTAATGTTTTTAACATTT
TAAGGGTTAGCCAGGATTTAAATTAAGTGAACCTTGTTATGGTTGCCAGATTGGTACAGT
CTTAGAGCAAGTATATAACATGCAATAATGGAAAGCTAGAGTGCATGTCCTCTTACCTGG
ATGCTTCCCCTCATTTGCTTTTAAGCTTTGGTGTGTTTCAAACCTATTTTTATTATTGTG
GTTGCATTGAGAATGGTTGTGGCCAAAACAAGTTTTTAATAATGTCTGTAACTTATTTCA
GCAAAGTCAGCATATTTACTCATTAACAGATATGTGAGCAGATATTTGGACCAGGTACAA
CAGTTAACCAAACCAACAAAAATTCTTGCCTTCATGGAGCTTACATTCTTACTTTTTATC
TAAATTCATTAATATGTTAAATGTTATTCTAGGAGTGATCAGCTAGTGTGTAATCAGAAA
GGTCACACTCCCAAAGCAGCTACTCTAAGTCTTCAGAATCATTAATATGTTAAATGTTAT
TCTAGGAGTGATCAGCTAGTGTTTAATCAGAAAGGTCACACTCCCAAAGCAGCTACTCTA
TTATGTAACAGACATCAGAAATGACCTGTCCTTATTATAGGGGTTTCCTTATAATGGGGT
GATGTGTTATATATTGGAATTGTCAAATAGTTTGGGGATATTCCCCTCCCTCAGAAACAG
GGCATAGATCAGATGAACTCTATCTACATCCTTTACTTTTTAGAATGGCATTTAGGTTAG
CATAAAAGCTGGAATGATTTTGGAGGATTTTAGCCTAATGCTAACTATAAGGTTAATAAT
TATGCCTTCAGAGTATTGTTCCATCTGCCTGAAGAAACCTTTTATGCAAAAGTTGAAGCA
TCAAGAGAAAACAGAACTGGGATTTCATTGAGGATACCAAGCAGATTGTATGAATTATTT
TTGTGCTGCTTGATAATACTTTTGTCCAATAAATGTTTATTGTACAGGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8WVX3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WVX3_HUMAN

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               70-345, gnl|bosTau2|chr6 (3069984-3069707)
               

               
               70-345, gnl|Hg17|chr4 (120579356-120579084)
               


               
               683-1128, gnl|bosTau2|chr6 (3065802-3065347)
               

               
               683-1128, gnl|Hg17|chr4 (120577035-120576204)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-345, gnl|bosTau2|chr6 (3069984-3069707)
               

               
               70-345, gnl|Hg17|chr4 (120579356-120579084)
               


               
               683-1128, gnl|bosTau2|chr6 (3065802-3065347)
               

               
               683-1128, gnl|Hg17|chr4 (120577035-120576204)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

Help | Less info


               
               kid (1.81629)
               

               
               sin (1.57453)
               

               
               lin (1.16482)
               

               
               ret (1.02987)
               

               
               spl (0.859107)
               

               
               nco (0.808669)
               

               
               cty (0.72856)
               

               
               duo (0.691204)
               

               
               lyg (0.665513)
               

               
               sug (0.636456)
               

               
               fco (0.628832)
               

               
               fcc (0.593354)
               

               
               eje (0.593003)
               

               
               liv (0.585137)
               

               
               col (0.585023)
               

               
               cbl (0.573987)
               

               
               hyp (0.571347)
               

               
               ill (0.526778)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               ski (0.440205)
               

               
               pty (0.428143)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               ldo (0.291008)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.81629)
               

               
               sin (1.57453)
               

               
               lin (1.16482)
               

               
               ret (1.02987)
               

               
               spl (0.859107)
               

               
               nco (0.808669)
               

               
               cty (0.72856)
               

               
               duo (0.691204)
               

               
               lyg (0.665513)
               

               
               sug (0.636456)
               

               
               fco (0.628832)
               

               
               fcc (0.593354)
               

               
               eje (0.593003)
               

               
               liv (0.585137)
               

               
               col (0.585023)
               

               
               cbl (0.573987)
               

               
               hyp (0.571347)
               

               
               ill (0.526778)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               ski (0.440205)
               

               
               pty (0.428143)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               ldo (0.291008)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	70-345, gnl\|bosTau2\|chr6 (3069984-3069707)
	70-345, gnl\|Hg17\|chr4 (120579356-120579084)

	683-1128, gnl\|bosTau2\|chr6 (3065802-3065347)
	683-1128, gnl\|Hg17\|chr4 (120577035-120576204)

	kid (1.81629)
	sin (1.57453)
	lin (1.16482)
	ret (1.02987)
	spl (0.859107)
	nco (0.808669)
	cty (0.72856)
	duo (0.691204)
	lyg (0.665513)
	sug (0.636456)
	fco (0.628832)
	fcc (0.593354)
	eje (0.593003)
	liv (0.585137)
	col (0.585023)
	cbl (0.573987)
	hyp (0.571347)
	ill (0.526778)
	rec (0.519211)
	pro (0.512033)
	fhi (0.508733)
	ski (0.440205)
	pty (0.428143)
	tes (0.415628)
	ste (0.405625)
	aor (0.390549)
	elu (0.385356)
	nlu (0.383362)
	thg (0.380373)
	bla (0.373042)
	nep (0.36785)
	sag (0.36543)
	ebs (0.354904)
	fbs (0.350693)
	ecc (0.345105)
	nje (0.33184)
	cki (0.330469)
	mga (0.32041)
	bfe (0.299715)
	jej (0.296765)
	ldo (0.291008)
	eru (0.240096)
	clu (0.239292)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	mcp (0.170648)
	tbr (0.154178)
	fat (0.147427)
	lnt (0.142308)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)