Non-Coding RNA Search

Ss1.1-Utr1-UTR01C060101.5

Sequence:


               
               ATTCAGAGAAAGTCTCTCGGACTTTTTCCAAACTGGATTATTCAGGGATTGCCCTCCTGA
TCATGGGGAGCTTCGTCCCCTGGCTCTATTACTCGTTCTACTGCTCCCCGCAGCCACGGC
TCATCTACCTCTCCATCGTCTGTGTCCTGGGCATTTCTGCCATCATTGTGGCACAGTGGG
ACCGGTTTGCCACTCCTAAGCACCGGCAGACAAGAGCAGGGGTGTTCCTGGGGCTTGGCC
TGAGTGGCGTTGTGCCCACCATGCACTTTACGATCGCGGAGGGTTTCGTCAAGGCCACCA
CCGTGGGCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCGGAGCCGGCC
TTTATGCTGCGCGCATTCCTGAGCGCTTCTTCCCTGGAAAATTCGACATATGGTTCCAGT
CTCATCAGATCTTCCACGTCCTGGTGGTGGCAGCAGCCTTTGTCCACTTCTATGGGGTCT
CCAACCTTCAGGAGTTCCGCTACGGCCTGGAAGGCGGCTGCACCGACGACTCCCTCCTCT
GAGCCCCCACCCCCATGGGCGCAGGAGGAGCTTCCCAAGTGCTTTTAAGAGAACTTCTTT
GCTGAAGTGAGAGGAAGAGTCTGAGTTGTCTGTTTCTAGAAGAAACCTCTTAGAGAATTC
AGTACCAACCAAGCTTTGGCCCGCATCACACACACTGGGCAATAAACTCTCCGTTCCCCC
GGCTGAGAAGGGGAGCAGCGGGCAGGCTTGGGCTCCCCTCCTTGGCCATCCCCCCCATCA
GTAGGGCAACTACTGTTCCCTCAGAGAGATGGGACTTTGAAGCTCATGTTGAGATTTTAC
CCCTCCCTCCAGCCATTTGGGGAAAAATGATGGACTGGGACTCTTCAGAAATCACGTTTC
TGGGGGAAAATTTCCCTCTCTTACCCCAACCCGACTTTGTATCCTGGCTTATAACAGGCC
GTCCGTTTTTGTAGTACACTTTTCAAAGACAGTTAACACCTGGTCCCATCTTTCTAGGGC
CTGGACCTGCTCCCCCAGCAGGAAGAACAAAGCCACCAACTTTTACACAGCCCGGCTAAT
CATGGACGTGTGTCCAGGCTTCAGATAACTTGAGTTTTAATTTTTTTTTTTTCTTGGCAG
AGTAATGTAAAATTAAAGTGGGAAAAGATATTTAATATTTAATACTAAGCTTTAAAAAGA
AACCGCTATCATTGCTATGTATCAGTGCAAAGACTATGATGATAATAAAAGAGTACAGGA
AACACTTGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGAGAAAGTCTCTCGGACTTTTTCCAAACTGGATTATTCAGGGATTGCCCTCCTGA
TCATGGGGAGCTTCGTCCCCTGGCTCTATTACTCGTTCTACTGCTCCCCGCAGCCACGGC
TCATCTACCTCTCCATCGTCTGTGTCCTGGGCATTTCTGCCATCATTGTGGCACAGTGGG
ACCGGTTTGCCACTCCTAAGCACCGGCAGACAAGAGCAGGGGTGTTCCTGGGGCTTGGCC
TGAGTGGCGTTGTGCCCACCATGCACTTTACGATCGCGGAGGGTTTCGTCAAGGCCACCA
CCGTGGGCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCGGAGCCGGCC
TTTATGCTGCGCGCATTCCTGAGCGCTTCTTCCCTGGAAAATTCGACATATGGTTCCAGT
CTCATCAGATCTTCCACGTCCTGGTGGTGGCAGCAGCCTTTGTCCACTTCTATGGGGTCT
CCAACCTTCAGGAGTTCCGCTACGGCCTGGAAGGCGGCTGCACCGACGACTCCCTCCTCT
GAGCCCCCACCCCCATGGGCGCAGGAGGAGCTTCCCAAGTGCTTTTAAGAGAACTTCTTT
GCTGAAGTGAGAGGAAGAGTCTGAGTTGTCTGTTTCTAGAAGAAACCTCTTAGAGAATTC
AGTACCAACCAAGCTTTGGCCCGCATCACACACACTGGGCAATAAACTCTCCGTTCCCCC
GGCTGAGAAGGGGAGCAGCGGGCAGGCTTGGGCTCCCCTCCTTGGCCATCCCCCCCATCA
GTAGGGCAACTACTGTTCCCTCAGAGAGATGGGACTTTGAAGCTCATGTTGAGATTTTAC
CCCTCCCTCCAGCCATTTGGGGAAAAATGATGGACTGGGACTCTTCAGAAATCACGTTTC
TGGGGGAAAATTTCCCTCTCTTACCCCAACCCGACTTTGTATCCTGGCTTATAACAGGCC
GTCCGTTTTTGTAGTACACTTTTCAAAGACAGTTAACACCTGGTCCCATCTTTCTAGGGC
CTGGACCTGCTCCCCCAGCAGGAAGAACAAAGCCACCAACTTTTACACAGCCCGGCTAAT
CATGGACGTGTGTCCAGGCTTCAGATAACTTGAGTTTTAATTTTTTTTTTTTCTTGGCAG
AGTAATGTAAAATTAAAGTGGGAAAAGATATTTAATATTTAATACTAAGCTTTAAAAAGA
AACCGCTATCATTGCTATGTATCAGTGCAAAGACTATGATGATAATAAAAGAGTACAGGA
AACACTTGGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6T5C5_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6T5C5_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               939-1056, + strand, RNAz p=0.779412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               939-1056, + strand, RNAz p=0.779412

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015999, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015999, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               638-1246, gnl|bosTau2|chr11 (25215623-25216217)
               

               
               638-1246, gnl|Hg17|chr1 (199642260-199641655)
               

               
               638-1246, gnl|Mm7|chr1 (134321541-134322101)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               638-1246, gnl|bosTau2|chr11 (25215623-25216217)
               

               
               638-1246, gnl|Hg17|chr1 (199642260-199641655)
               

               
               638-1246, gnl|Mm7|chr1 (134321541-134322101)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               cbe (0.478469)
               

               
               cov (0.396458)
               

               
               vin (0.332557)
               

               
               csk (0.281492)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               cov (0.396458)
               

               
               vin (0.332557)
               

               
               csk (0.281492)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	638-1246, gnl\|bosTau2\|chr11 (25215623-25216217)
	638-1246, gnl\|Hg17\|chr1 (199642260-199641655)
	638-1246, gnl\|Mm7\|chr1 (134321541-134322101)

	cbe (0.478469)
	cov (0.396458)
	vin (0.332557)
	csk (0.281492)
	sin (0.174948)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	eli (0.151814)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	che (0.136314)
	eep (0.122564)
	cly (0.120642)
	med (0.116252)
	spc (0.113366)
	eje (0.0988338)