Ss1.1-Utr1-UTR01C070087.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGATGGCGGTGGCGCCCCGCCTGGGCTGGGGAGCTGCGGCAGCTGCCGCGGGGCTGCGA AGGCGATTATGTCAGATGATGAATCCATATACCATTAAGAAACAGCCTCTGCATCAGTTT GTCCAAAGACAACTTTTTCCACTACCTGCAACTTTATATAACCCAGTGAGATACATGTTT ATTCAAACGCAAGATACTCCAAATCCCAATAGTTTAAAGTTTATTCCTGGAAAGCCAGTT CTTGAGACAAGGACCATGGATTTTCCCACACCAGCTGCAGCATTTTGCTCCCCTCTGGCT AGGCAGTTATTTAGGATTGAAGGAGTAAAAAGTGTCTTCTTTGGACCAGATTTCATCACT GTCACAAAAGAAAGTGAAGAGTTAGATTGGAATTTACTGAAACCAGATATTTATGCTACA ATTATGGATTTCTTTGCATCTGGCCTACCTTTAGTTACTGAGGAAACACCTTCAGGAGAA GCAGGATCTGAAGATGATGATGAAGTTGTGGCAATGATTAAGGAATTGTTAGATACTAGA ATACGGCCAACTGTGCAGGAAGATGGAGGAGATGTAATCTATAAAGGCTTTGAAGATGGC ATCGTACAGCTGAAACTCCAAGGTTCTTGTACCAGCTGCCCCAGTTCAATCATTACTTTG AAAAATGGAATTCAGAACATGCTGCAATTTTATATTCCAGAAGTAGAAGGTGTAGAACAG GTTATGGATGATGAATCAGATGAAAAAGAAGCAAACTCACCTTAAAGTAATTTGAGTTTT CTTTGAGCCCAGCAGTCAGACTTGCTGATAATATATACTAAGCTTTTATTATTAATCTGC TAAGAAATTTGAGGATTAATAAAATGTGCCCTTTCTTCAGAGAATGATATATAAATATTG CATGTTTGCTTTACCTCATATGAGTTATTTATAACATCCTGAGTCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGATGGCGGTGGCGCCCCGCCTGGGCTGGGGAGCTGCGGCAGCTGCCGCGGGGCTGCGA AGGCGATTATGTCAGATGATGAATCCATATACCATTAAGAAACAGCCTCTGCATCAGTTT GTCCAAAGACAACTTTTTCCACTACCTGCAACTTTATATAACCCAGTGAGATACATGTTT ATTCAAACGCAAGATACTCCAAATCCCAATAGTTTAAAGTTTATTCCTGGAAAGCCAGTT CTTGAGACAAGGACCATGGATTTTCCCACACCAGCTGCAGCATTTTGCTCCCCTCTGGCT AGGCAGTTATTTAGGATTGAAGGAGTAAAAAGTGTCTTCTTTGGACCAGATTTCATCACT GTCACAAAAGAAAGTGAAGAGTTAGATTGGAATTTACTGAAACCAGATATTTATGCTACA ATTATGGATTTCTTTGCATCTGGCCTACCTTTAGTTACTGAGGAAACACCTTCAGGAGAA GCAGGATCTGAAGATGATGATGAAGTTGTGGCAATGATTAAGGAATTGTTAGATACTAGA ATACGGCCAACTGTGCAGGAAGATGGAGGAGATGTAATCTATAAAGGCTTTGAAGATGGC ATCGTACAGCTGAAACTCCAAGGTTCTTGTACCAGCTGCCCCAGTTCAATCATTACTTTG AAAAATGGAATTCAGAACATGCTGCAATTTTATATTCCAGAAGTAGAAGGTGTAGAACAG GTTATGGATGATGAATCAGATGAAAAAGAAGCAAACTCACCTTAAAGTAATTTGAGTTTT CTTTGAGCCCAGCAGTCAGACTTGCTGATAATATATACTAAGCTTTTATTATTAATCTGC TAAGAAATTTGAGGATTAATAAAATGTGCCCTTTCTTCAGAGAATGATATATAAATATTG CATGTTTGCTTTACCTCATATGAGTTATTTATAACATCCTGAGTCATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 165-303, gnl|bosTau2|chr11 (48900071-48900209) | |
| 165-303, gnl|canFam2|chr10 (71308738-71308900) | |
| 165-303, gnl|danRer3|chr8 (42176743-42176580) | |
| 165-303, gnl|dasNov1|scaffold_1499 (98100-97938) | |
| 165-303, gnl|echTel1|scaffold_313906 (78472-78628) | |
| 165-303, gnl|fr1|chrUn (297356074-297356243) | |
| 165-303, gnl|galGal2|chr22 (93264-93105) | |
| 165-303, gnl|hg17|chr2 (69562354-69562516) | |
| 165-303, gnl|Hg17|chr2 (69562502-69562364) | |
| 165-303, gnl|loxAfr1|scaffold_91592 (4426-4269) | |
| 165-303, gnl|mm7|chr6 (87090795-87090638) | |
| 165-303, gnl|Mm7|chr6 (87090650-87090788) | |
| 165-303, gnl|monDom2|scaffold_1 (96231672-96231836) | |
| 165-303, gnl|oryCun1|scaffold_198933 (3040-3207) | |
| 165-303, gnl|panTro1|chr12 (71798758-71798922) | |
| 165-303, gnl|rheMac2|chr2 (96852465-96852617) | |
| 165-303, gnl|rn3|chr4 (121416527-121416370) | |
| 165-303, gnl|tetNig1|chr12 (569081-568929) | |
| 165-303, gnl|xenTro1|scaffold_110 (1208802-1208958) | |
| 370-485, gnl|bosTau2|chr11 (48907718-48907833) | |
| 370-485, gnl|Hg17|chr2 (69554082-69553967) | |
| 370-485, gnl|Mm7|chr6 (87095805-87095926) | |
| 719-948, gnl|bosTau2|chr11 (48922288-48922517) | |
| 719-948, gnl|Hg17|chr2 (69535075-69534850) | |
| 719-948, gnl|Mm7|chr6 (87103379-87103591) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 165-303, gnl|bosTau2|chr11 (48900071-48900209) | |
| 165-303, gnl|canFam2|chr10 (71308738-71308900) | |
| 165-303, gnl|danRer3|chr8 (42176743-42176580) | |
| 165-303, gnl|dasNov1|scaffold_1499 (98100-97938) | |
| 165-303, gnl|echTel1|scaffold_313906 (78472-78628) | |
| 165-303, gnl|fr1|chrUn (297356074-297356243) | |
| 165-303, gnl|galGal2|chr22 (93264-93105) | |
| 165-303, gnl|hg17|chr2 (69562354-69562516) | |
| 165-303, gnl|Hg17|chr2 (69562502-69562364) | |
| 165-303, gnl|loxAfr1|scaffold_91592 (4426-4269) | |
| 165-303, gnl|mm7|chr6 (87090795-87090638) | |
| 165-303, gnl|Mm7|chr6 (87090650-87090788) | |
| 165-303, gnl|monDom2|scaffold_1 (96231672-96231836) | |
| 165-303, gnl|oryCun1|scaffold_198933 (3040-3207) | |
| 165-303, gnl|panTro1|chr12 (71798758-71798922) | |
| 165-303, gnl|rheMac2|chr2 (96852465-96852617) | |
| 165-303, gnl|rn3|chr4 (121416527-121416370) | |
| 165-303, gnl|tetNig1|chr12 (569081-568929) | |
| 165-303, gnl|xenTro1|scaffold_110 (1208802-1208958) | |
| 370-485, gnl|bosTau2|chr11 (48907718-48907833) | |
| 370-485, gnl|Hg17|chr2 (69554082-69553967) | |
| 370-485, gnl|Mm7|chr6 (87095805-87095926) | |
| 719-948, gnl|bosTau2|chr11 (48922288-48922517) | |
| 719-948, gnl|Hg17|chr2 (69535075-69534850) | |
| 719-948, gnl|Mm7|chr6 (87103379-87103591) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| cbe (1.19617) | |
| lin (0.728014) | |
| rec (0.692281) | |
| tes (0.623441) | |
| bfe (0.599431) | |
| gul (0.532765) | |
| pro (0.512033) | |
| pgl (0.473934) | |
| tra (0.369276) | |
| vin (0.332557) | |
| cki (0.330469) | |
| mga (0.32041) | |
| fco (0.314416) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| cte (0.29274) | |
| liv (0.292569) | |
| kid (0.259471) | |
| thg (0.253582) | |
| eep (0.245128) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| nco (0.161734) | |
| isp (0.150376) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (1.19617) | |
| lin (0.728014) | |
| rec (0.692281) | |
| tes (0.623441) | |
| bfe (0.599431) | |
| gul (0.532765) | |
| pro (0.512033) | |
| pgl (0.473934) | |
| tra (0.369276) | |
| vin (0.332557) | |
| cki (0.330469) | |
| mga (0.32041) | |
| fco (0.314416) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| cte (0.29274) | |
| liv (0.292569) | |
| kid (0.259471) | |
| thg (0.253582) | |
| eep (0.245128) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| nco (0.161734) | |
| isp (0.150376) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| spc (0.113366) | |
| eje (0.0988338) |