Ss1.1-Utr1-UTR01D010089.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTTAATACACTGGACCACACCACTGAGATCAGTGTGTCCCGCCTCGAGACTGTCATC TCATCCATCTACTACCAGCTGAACAAGCGCCTTCCTTCCACTCACCAAATCAGCGTGGAA CAGTCCATCAGCCTCCTCCTCAACTTCATGATTGCTGCATACGACAGTGAGGGCCGAGGC AAGTTGACGGTATTTTCAGTTAAAGCTATGTTAGCAACCATGTGTGGTGGAAAAATGCTG GACAAATTGAGATATGTTTTCTCCCAGATGTCAGATTCCAATGGCTTAATGATATTTAGC AAGTTTGACCAGTTTCTGAAGGAAGTTCTGAAGCTCCCAACAGCGGTCTTTGAAGGGCCA TCTTTCGGTTACACAGAGCACTCAGTCCGCACCTGTTTTCCACAGCAGAAAAAGATAATG CTAAATATGTTTTTAGACACAATGATGGCCGATCCTCCTCCCCAGTGCCTTGTCTGGCTA CCTCTCATGCATAGGCTTGCTCATGTTGAGAATGTCTTCCATCCCGTGGAGTGCTCCTAT TGCCGCTGCGAGAGTATGATGGGTTTCCGGTACCGATGCCAGCAGTGCCACAACTACCAG CTCTGCCAAAATTGCTTTTGGCGTGGTCATGCCAGTGGCCCGCACAGCAACCAACACCAG ATGAAGGAGCATTCCTCCTGGAAATCCCCTGCAAAGAAGCTGAGCCATGCAATTAGTAAA TCCTTGGGGTGTGTACCCACCAGAGAACCCCCGCATCCTGTTTTTCCTGAGCAACCAGAG AAACCACTGGACCTTGCAAATATAGTTCCTCCTCGCCCTCTGGCCAACATGAATGACACC ATGGTGAGCCACATGTCCTCGGGGGCGCCCACTCCCACCAAGAGGTTACAGTATAGCCAG CATATACCCAGTCACTTGGCTGATGAGCATGCGCTGATAGCCTCCTATGTGGCCCGACTG CAGCACTGTGCACGTGTCCTGGACAGTCCTAGCCGGCTGGACGAGGAACACCGGCTTATA GCTCGCTATGCTGCCCGGCTGGCTGCAGAGGCAGGAAACGTGACCCGTCCTCCCACTGAC TTGAGCTTTAACTTTGATGCCAACAAACAACAAAGGCAGCTTATTGCAGAGCTGGAAAAT AAAAACAGAGAGATCCTGCAGGAGATTCAGCGTCTTCGTCTGGAGCACGAGCAGGCCTCC CAGCCCACCCCCGAGAAGGCCCAGCAGAACCCCACGCTGCTGGCAGAGCTGCGGCTGCTG AGGCAGCGGAAGGATGAGCTGGAGCAGAGGATGTCGGCGCTGCAGGAGAGCAGGCGGGAG CTGATGGTCCAGCTGGAAGGGCTGATGAAGCTACTGAAGGCTCAGGCCACGGCATCGCCG CACACATCGCCCACGCATGGAGGTGGCCGCCCGCTGCCGATGCCTGTGCGCTCCGCCTCC GCTGGCTCCACCCCCACCCACTGCCCGCAGGACCCCCTGAGCGGCGTCGGCGGGGACATG CAGGAGGCCTTCGCCCAAGGTACGAGGAGAAACCTCCGCAATGACCTGCTGGTGGCTGCC GACTCCATCACCAACACCATGTCATCCCTGGTGAAGGAGCTCCACTCATGTTAGCAGCCT TTGCTCGGAGACCCTCAGCAGTGCCTGTGAGTCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTTAATACACTGGACCACACCACTGAGATCAGTGTGTCCCGCCTCGAGACTGTCATC TCATCCATCTACTACCAGCTGAACAAGCGCCTTCCTTCCACTCACCAAATCAGCGTGGAA CAGTCCATCAGCCTCCTCCTCAACTTCATGATTGCTGCATACGACAGTGAGGGCCGAGGC AAGTTGACGGTATTTTCAGTTAAAGCTATGTTAGCAACCATGTGTGGTGGAAAAATGCTG GACAAATTGAGATATGTTTTCTCCCAGATGTCAGATTCCAATGGCTTAATGATATTTAGC AAGTTTGACCAGTTTCTGAAGGAAGTTCTGAAGCTCCCAACAGCGGTCTTTGAAGGGCCA TCTTTCGGTTACACAGAGCACTCAGTCCGCACCTGTTTTCCACAGCAGAAAAAGATAATG CTAAATATGTTTTTAGACACAATGATGGCCGATCCTCCTCCCCAGTGCCTTGTCTGGCTA CCTCTCATGCATAGGCTTGCTCATGTTGAGAATGTCTTCCATCCCGTGGAGTGCTCCTAT TGCCGCTGCGAGAGTATGATGGGTTTCCGGTACCGATGCCAGCAGTGCCACAACTACCAG CTCTGCCAAAATTGCTTTTGGCGTGGTCATGCCAGTGGCCCGCACAGCAACCAACACCAG ATGAAGGAGCATTCCTCCTGGAAATCCCCTGCAAAGAAGCTGAGCCATGCAATTAGTAAA TCCTTGGGGTGTGTACCCACCAGAGAACCCCCGCATCCTGTTTTTCCTGAGCAACCAGAG AAACCACTGGACCTTGCAAATATAGTTCCTCCTCGCCCTCTGGCCAACATGAATGACACC ATGGTGAGCCACATGTCCTCGGGGGCGCCCACTCCCACCAAGAGGTTACAGTATAGCCAG CATATACCCAGTCACTTGGCTGATGAGCATGCGCTGATAGCCTCCTATGTGGCCCGACTG CAGCACTGTGCACGTGTCCTGGACAGTCCTAGCCGGCTGGACGAGGAACACCGGCTTATA GCTCGCTATGCTGCCCGGCTGGCTGCAGAGGCAGGAAACGTGACCCGTCCTCCCACTGAC TTGAGCTTTAACTTTGATGCCAACAAACAACAAAGGCAGCTTATTGCAGAGCTGGAAAAT AAAAACAGAGAGATCCTGCAGGAGATTCAGCGTCTTCGTCTGGAGCACGAGCAGGCCTCC CAGCCCACCCCCGAGAAGGCCCAGCAGAACCCCACGCTGCTGGCAGAGCTGCGGCTGCTG AGGCAGCGGAAGGATGAGCTGGAGCAGAGGATGTCGGCGCTGCAGGAGAGCAGGCGGGAG CTGATGGTCCAGCTGGAAGGGCTGATGAAGCTACTGAAGGCTCAGGCCACGGCATCGCCG CACACATCGCCCACGCATGGAGGTGGCCGCCCGCTGCCGATGCCTGTGCGCTCCGCCTCC GCTGGCTCCACCCCCACCCACTGCCCGCAGGACCCCCTGAGCGGCGTCGGCGGGGACATG CAGGAGGCCTTCGCCCAAGGTACGAGGAGAAACCTCCGCAATGACCTGCTGGTGGCTGCC GACTCCATCACCAACACCATGTCATCCCTGGTGAAGGAGCTCCACTCATGTTAGCAGCCT TTGCTCGGAGACCCTCAGCAGTGCCTGTGAGTCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 551-669, - strand, RNAz p=0.600004 | |
| 564-681, - strand, RNAz p=0.967368 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 551-669, - strand, RNAz p=0.600004 | |
| 564-681, - strand, RNAz p=0.967368 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 1-167, gnl|bosTau2|chr11 (54273804-54273638) | |
| 1-167, gnl|canFam2|chr17 (22804028-22804265) | |
| 1-167, gnl|danRer3|chr17 (44981035-44980800) | |
| 1-167, gnl|dasNov1|scaffold_179877 (592-379) | |
| 1-167, gnl|echTel1|scaffold_293111 (94229-94460) | |
| 1-167, gnl|fr1|chrUn (2222858-2222643) | |
| 1-167, gnl|galGal2|chr3 (102803573-102803806) | |
| 1-167, gnl|hg17|chr2 (25762692-25762929) | |
| 1-167, gnl|Hg17|chr2 (25762857-25762691) | |
| 1-167, gnl|loxAfr1|scaffold_40978 (12077-11839) | |
| 1-167, gnl|mm7|chr12 (3515334-3515099) | |
| 1-167, gnl|Mm7|chr12 (3515167-3515333) | |
| 1-167, gnl|monDom2|scaffold_1 (151273398-151273165) | |
| 1-167, gnl|oryCun1|scaffold_197883 (4857-4620) | |
| 1-167, gnl|panTro1|chr12_random (12219094-12219332) | |
| 1-167, gnl|rheMac2|chr13 (25567116-25567353) | |
| 1-167, gnl|rn3|chr6 (26575106-26574871) | |
| 1-167, gnl|tetNig1|chr10 (10835186-10834971) | |
| 254-415, gnl|bosTau2|chr11 (54241797-54241636) | |
| 254-415, gnl|canFam2|chr17 (22777508-22777686) | |
| 254-415, gnl|danRer3|chr17 (44985317-44985127) | |
| 254-415, gnl|dasNov1|scaffold_42904 (4805-4627) | |
| 254-415, gnl|echTel1|scaffold_310237 (105529-105351) | |
| 254-415, gnl|fr1|chrUn (2224623-2224453) | |
| 254-415, gnl|galGal2|chr3 (102790929-102791097) | |
| 254-415, gnl|hg17|chr2 (25730598-25730776) | |
| 254-415, gnl|Hg17|chr2 (25730760-25730599) | |
| 254-415, gnl|loxAfr1|scaffold_168970 (4082-4260) | |
| 254-415, gnl|mm7|chr12 (3551445-3551267) | |
| 254-415, gnl|Mm7|chr12 (3551281-3551442) | |
| 254-415, gnl|monDom2|scaffold_1 (151319084-151318905) | |
| 254-415, gnl|panTro1|chr12 (26636486-26636664) | |
| 254-415, gnl|rheMac2|chr13 (25534426-25534604) | |
| 254-415, gnl|rn3|chr6 (26608121-26607942) | |
| 254-415, gnl|tetNig1|chr10 (10836566-10836396) | |
| 254-415, gnl|xenTro1|scaffold_843 (484369-484546) | |
| 511-681, gnl|bosTau2|chr11 (54229952-54229782) | |
| 511-681, gnl|canFam2|chr17 (22761460-22761652) | |
| 511-681, gnl|danRer3|chr17 (44986281-44986103) | |
| 511-681, gnl|dasNov1|scaffold_19157 (5860-5669) | |
| 511-681, gnl|echTel1|scaffold_310237 (124773-124601) | |
| 511-681, gnl|fr1|chrUn (2225042-2224849) | |
| 511-681, gnl|galGal2|chr3 (102777313-102777505) | |
| 511-681, gnl|hg17|chr2 (25711355-25711547) | |
| 511-681, gnl|Hg17|chr2 (25711528-25711358) | |
| 511-681, gnl|loxAfr1|scaffold_8800 (38581-38773) | |
| 511-681, gnl|mm7|chr12 (3566865-3566673) | |
| 511-681, gnl|Mm7|chr12 (3566690-3566860) | |
| 511-681, gnl|monDom2|scaffold_1 (151336047-151335852) | |
| 511-681, gnl|oryCun1|scaffold_91557 (1777-1969) | |
| 511-681, gnl|panTro1|chr12 (26617289-26617481) | |
| 511-681, gnl|rheMac2|chr13 (25514782-25514974) | |
| 511-681, gnl|rn3|chr6 (26618621-26618428) | |
| 511-681, gnl|tetNig1|chr10 (10837010-10836825) | |
| 511-681, gnl|xenTro1|scaffold_843 (479615-479807) | |
| 1147-1263, gnl|bosTau2|chr11 (54124603-54124487) | |
| 1147-1263, gnl|canFam2|chr17 (22645878-22646017) | |
| 1147-1263, gnl|danRer3|chr17 (45043246-45043104) | |
| 1147-1263, gnl|dasNov1|scaffold_179877 (1674-1554) | |
| 1147-1263, gnl|echTel1|scaffold_298990 (1860-1999) | |
| 1147-1263, gnl|fr1|chrUn (2232719-2232602) | |
| 1147-1263, gnl|hg17|chr2 (25567385-25567524) | |
| 1147-1263, gnl|Hg17|chr2 (25567521-25567405) | |
| 1147-1263, gnl|loxAfr1|scaffold_23498 (32182-32043) | |
| 1147-1263, gnl|mm7|chr12 (3667855-3667724) | |
| 1147-1263, gnl|Mm7|chr12 (3667723-3667839) | |
| 1147-1263, gnl|monDom2|scaffold_1 (151497265-151497126) | |
| 1147-1263, gnl|oryCun1|scaffold_16071 (3068-3205) | |
| 1147-1263, gnl|panTro1|chr12_random (12161895-12162035) | |
| 1147-1263, gnl|rheMac2|chr13 (25361823-25361962) | |
| 1147-1263, gnl|rn3|chr6 (26709473-26709340) | |
| 1147-1263, gnl|tetNig1|chr10 (10849541-10849423) | |
| 1147-1263, gnl|xenTro1|scaffold_843 (449841-449967) | |
| 1358-1521, gnl|bosTau2|chr11 (54089351-54089188) | |
| 1358-1521, gnl|canFam2|chr17 (22610877-22611010) | |
| 1358-1521, gnl|danRer3|chr17 (45053643-45053511) | |
| 1358-1521, gnl|dasNov1|scaffold_62071 (1439-1572) | |
| 1358-1521, gnl|fr1|chrUn (2234828-2234694) | |
| 1358-1521, gnl|hg17|chr2 (25522717-25522850) | |
| 1358-1521, gnl|Hg17|chr2 (25522883-25522720) | |
| 1358-1521, gnl|loxAfr1|scaffold_14216 (24239-24106) | |
| 1358-1521, gnl|mm7|chr12 (3691556-3691423) | |
| 1358-1521, gnl|Mm7|chr12 (3691388-3691551) | |
| 1358-1521, gnl|monDom2|scaffold_1 (151552296-151552163) | |
| 1358-1521, gnl|oryCun1|scaffold_205762 (59211-59078) | |
| 1358-1521, gnl|panTro1|chr12_random (12116309-12116442) | |
| 1358-1521, gnl|rheMac2|chr13 (25318960-25319093) | |
| 1358-1521, gnl|rn3|chr6 (26736954-26736821) | |
| 1358-1521, gnl|tetNig1|chr10 (10851313-10851181) | |
| 1358-1521, gnl|xenTro1|scaffold_843 (434463-434593) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-167, gnl|bosTau2|chr11 (54273804-54273638) | |
| 1-167, gnl|canFam2|chr17 (22804028-22804265) | |
| 1-167, gnl|danRer3|chr17 (44981035-44980800) | |
| 1-167, gnl|dasNov1|scaffold_179877 (592-379) | |
| 1-167, gnl|echTel1|scaffold_293111 (94229-94460) | |
| 1-167, gnl|fr1|chrUn (2222858-2222643) | |
| 1-167, gnl|galGal2|chr3 (102803573-102803806) | |
| 1-167, gnl|hg17|chr2 (25762692-25762929) | |
| 1-167, gnl|Hg17|chr2 (25762857-25762691) | |
| 1-167, gnl|loxAfr1|scaffold_40978 (12077-11839) | |
| 1-167, gnl|mm7|chr12 (3515334-3515099) | |
| 1-167, gnl|Mm7|chr12 (3515167-3515333) | |
| 1-167, gnl|monDom2|scaffold_1 (151273398-151273165) | |
| 1-167, gnl|oryCun1|scaffold_197883 (4857-4620) | |
| 1-167, gnl|panTro1|chr12_random (12219094-12219332) | |
| 1-167, gnl|rheMac2|chr13 (25567116-25567353) | |
| 1-167, gnl|rn3|chr6 (26575106-26574871) | |
| 1-167, gnl|tetNig1|chr10 (10835186-10834971) | |
| 254-415, gnl|bosTau2|chr11 (54241797-54241636) | |
| 254-415, gnl|canFam2|chr17 (22777508-22777686) | |
| 254-415, gnl|danRer3|chr17 (44985317-44985127) | |
| 254-415, gnl|dasNov1|scaffold_42904 (4805-4627) | |
| 254-415, gnl|echTel1|scaffold_310237 (105529-105351) | |
| 254-415, gnl|fr1|chrUn (2224623-2224453) | |
| 254-415, gnl|galGal2|chr3 (102790929-102791097) | |
| 254-415, gnl|hg17|chr2 (25730598-25730776) | |
| 254-415, gnl|Hg17|chr2 (25730760-25730599) | |
| 254-415, gnl|loxAfr1|scaffold_168970 (4082-4260) | |
| 254-415, gnl|mm7|chr12 (3551445-3551267) | |
| 254-415, gnl|Mm7|chr12 (3551281-3551442) | |
| 254-415, gnl|monDom2|scaffold_1 (151319084-151318905) | |
| 254-415, gnl|panTro1|chr12 (26636486-26636664) | |
| 254-415, gnl|rheMac2|chr13 (25534426-25534604) | |
| 254-415, gnl|rn3|chr6 (26608121-26607942) | |
| 254-415, gnl|tetNig1|chr10 (10836566-10836396) | |
| 254-415, gnl|xenTro1|scaffold_843 (484369-484546) | |
| 511-681, gnl|bosTau2|chr11 (54229952-54229782) | |
| 511-681, gnl|canFam2|chr17 (22761460-22761652) | |
| 511-681, gnl|danRer3|chr17 (44986281-44986103) | |
| 511-681, gnl|dasNov1|scaffold_19157 (5860-5669) | |
| 511-681, gnl|echTel1|scaffold_310237 (124773-124601) | |
| 511-681, gnl|fr1|chrUn (2225042-2224849) | |
| 511-681, gnl|galGal2|chr3 (102777313-102777505) | |
| 511-681, gnl|hg17|chr2 (25711355-25711547) | |
| 511-681, gnl|Hg17|chr2 (25711528-25711358) | |
| 511-681, gnl|loxAfr1|scaffold_8800 (38581-38773) | |
| 511-681, gnl|mm7|chr12 (3566865-3566673) | |
| 511-681, gnl|Mm7|chr12 (3566690-3566860) | |
| 511-681, gnl|monDom2|scaffold_1 (151336047-151335852) | |
| 511-681, gnl|oryCun1|scaffold_91557 (1777-1969) | |
| 511-681, gnl|panTro1|chr12 (26617289-26617481) | |
| 511-681, gnl|rheMac2|chr13 (25514782-25514974) | |
| 511-681, gnl|rn3|chr6 (26618621-26618428) | |
| 511-681, gnl|tetNig1|chr10 (10837010-10836825) | |
| 511-681, gnl|xenTro1|scaffold_843 (479615-479807) | |
| 1147-1263, gnl|bosTau2|chr11 (54124603-54124487) | |
| 1147-1263, gnl|canFam2|chr17 (22645878-22646017) | |
| 1147-1263, gnl|danRer3|chr17 (45043246-45043104) | |
| 1147-1263, gnl|dasNov1|scaffold_179877 (1674-1554) | |
| 1147-1263, gnl|echTel1|scaffold_298990 (1860-1999) | |
| 1147-1263, gnl|fr1|chrUn (2232719-2232602) | |
| 1147-1263, gnl|hg17|chr2 (25567385-25567524) | |
| 1147-1263, gnl|Hg17|chr2 (25567521-25567405) | |
| 1147-1263, gnl|loxAfr1|scaffold_23498 (32182-32043) | |
| 1147-1263, gnl|mm7|chr12 (3667855-3667724) | |
| 1147-1263, gnl|Mm7|chr12 (3667723-3667839) | |
| 1147-1263, gnl|monDom2|scaffold_1 (151497265-151497126) | |
| 1147-1263, gnl|oryCun1|scaffold_16071 (3068-3205) | |
| 1147-1263, gnl|panTro1|chr12_random (12161895-12162035) | |
| 1147-1263, gnl|rheMac2|chr13 (25361823-25361962) | |
| 1147-1263, gnl|rn3|chr6 (26709473-26709340) | |
| 1147-1263, gnl|tetNig1|chr10 (10849541-10849423) | |
| 1147-1263, gnl|xenTro1|scaffold_843 (449841-449967) | |
| 1358-1521, gnl|bosTau2|chr11 (54089351-54089188) | |
| 1358-1521, gnl|canFam2|chr17 (22610877-22611010) | |
| 1358-1521, gnl|danRer3|chr17 (45053643-45053511) | |
| 1358-1521, gnl|dasNov1|scaffold_62071 (1439-1572) | |
| 1358-1521, gnl|fr1|chrUn (2234828-2234694) | |
| 1358-1521, gnl|hg17|chr2 (25522717-25522850) | |
| 1358-1521, gnl|Hg17|chr2 (25522883-25522720) | |
| 1358-1521, gnl|loxAfr1|scaffold_14216 (24239-24106) | |
| 1358-1521, gnl|mm7|chr12 (3691556-3691423) | |
| 1358-1521, gnl|Mm7|chr12 (3691388-3691551) | |
| 1358-1521, gnl|monDom2|scaffold_1 (151552296-151552163) | |
| 1358-1521, gnl|oryCun1|scaffold_205762 (59211-59078) | |
| 1358-1521, gnl|panTro1|chr12_random (12116309-12116442) | |
| 1358-1521, gnl|rheMac2|chr13 (25318960-25319093) | |
| 1358-1521, gnl|rn3|chr6 (26736954-26736821) | |
| 1358-1521, gnl|tetNig1|chr10 (10851313-10851181) | |
| 1358-1521, gnl|xenTro1|scaffold_843 (434463-434593) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| cty (0.20816) | |
| cut (0.169924) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| cty (0.20816) | |
| cut (0.169924) | |
| ecc (0.115035) |