Ss1.1-Utr1-UTR01D030090.5
|
TTTGAAGTGAGAAGGGATGTGGAAGACATTCTTTGGTTTAGATCAAGAATGCTTGAGAGA
AAGCTTATAGGCCTCTGTGCCATTCCCATTTCAGGAATGGCTATTGTCAAGGGGAAATGT
CCCTCTTGGGGATGACAGAGTATTTGCAAAAATTCAGCAAAATGGTGAACCATTTTCCAG
CTATCTCACCTTCATCTTCCTCTTTACTACCAGATGCCCTACTGGATTTTCCCCTAAACT
CTCCTATGTAAGACACTACTTACTCATTGTTCTTCTAAGGCACCACCCCGCTGGGGAGCT
GCAGCAGAACCAGCTCTCTCCTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGG
TTGGGACCCAGTCACAGCAGCTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTT
CCTGAGCTCTCTGCAGGAGACCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGC
CGTGTCTGAGGCTGCACCAGGTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCA
GCCCTTCATTCGCTATGACAATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAG
GGAGGAGCCAAGTTACTTCAATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTT
CCGCTTAAATCTGAGGAACGTGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAA
CAAAGCCCTGGAGCACAAGCAAACAGGTCCCCACACCCTCCAGTTCAACTACGGCTGTGA
GCTCCAGCAGGATGGCCGGACCTCAGGGCACTGGCAGTATGGCTATGATGGTGCCGACTA
CCTGAGCTTGCATCTGGATCCTCTGCAGTACACAGCGGCCACATTCATTGCTCAATATAC
CAAGCAAAAATGGGAGGCCGATAGGAACTTCATAGAGAGAGACAAGAACTACTTGGAGAA
AGAGTGCATTGTCTGGCTGCGGAGATACTTGGAGTTTGCAGGGGAGAGCTTGAACCGCAC
TGACCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAG
GTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCA
TTAAATGCCAAATGAGAAGCAGATAAATAGTTTATGAGGTTCATGGATGAGACACCCAAG
TGGTCGCAGCTTCATGAATGAAGTGGAACTGGCTGTGGAGCCTGATGGATGTGCATTACT
TAGGTGTCTGAAGAAAAGAAAAGGTGTTCTATGCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTGAAGTGAGAAGGGATGTGGAAGACATTCTTTGGTTTAGATCAAGAATGCTTGAGAGA
AAGCTTATAGGCCTCTGTGCCATTCCCATTTCAGGAATGGCTATTGTCAAGGGGAAATGT
CCCTCTTGGGGATGACAGAGTATTTGCAAAAATTCAGCAAAATGGTGAACCATTTTCCAG
CTATCTCACCTTCATCTTCCTCTTTACTACCAGATGCCCTACTGGATTTTCCCCTAAACT
CTCCTATGTAAGACACTACTTACTCATTGTTCTTCTAAGGCACCACCCCGCTGGGGAGCT
GCAGCAGAACCAGCTCTCTCCTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGG
TTGGGACCCAGTCACAGCAGCTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTT
CCTGAGCTCTCTGCAGGAGACCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGC
CGTGTCTGAGGCTGCACCAGGTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCA
GCCCTTCATTCGCTATGACAATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAG
GGAGGAGCCAAGTTACTTCAATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTT
CCGCTTAAATCTGAGGAACGTGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAA
CAAAGCCCTGGAGCACAAGCAAACAGGTCCCCACACCCTCCAGTTCAACTACGGCTGTGA
GCTCCAGCAGGATGGCCGGACCTCAGGGCACTGGCAGTATGGCTATGATGGTGCCGACTA
CCTGAGCTTGCATCTGGATCCTCTGCAGTACACAGCGGCCACATTCATTGCTCAATATAC
CAAGCAAAAATGGGAGGCCGATAGGAACTTCATAGAGAGAGACAAGAACTACTTGGAGAA
AGAGTGCATTGTCTGGCTGCGGAGATACTTGGAGTTTGCAGGGGAGAGCTTGAACCGCAC
TGACCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAG
GTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCA
TTAAATGCCAAATGAGAAGCAGATAAATAGTTTATGAGGTTCATGGATGAGACACCCAAG
TGGTCGCAGCTTCATGAATGAAGTGGAACTGGCTGTGGAGCCTGATGGATGTGCATTACT
TAGGTGTCTGAAGAAAAGAAAAGGTGTTCTATGCCC
|
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gi|61824659|ref|XP_590228.1| |
Protein identifier
|
gi|61824659|ref|XP_590228.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-259, gnl|bosTau2|chrX (38880467-38880215) |
|
1-259, gnl|Hg17|chrX (21518093-21518350) |
|
1-259, gnl|Mm7|chrX (152492669-152492421) |
| |
|
459-725, gnl|bosTau2|chr23 (23055047-23055315) |
| |
|
744-1022, gnl|bosTau2|chr23 (20999355-20999633) |
|
744-1022, gnl|hg17|chr6 (30364420-30365037) |
|
744-1022, gnl|Hg17|chr6 (30364866-30364624) |
|
744-1022, gnl|mm7|chr17 (34119264-34119855) |
|
744-1022, gnl|Mm7|chr17 (34119701-34119426) |
|
744-1022, gnl|oryCun1|scaffold_160743 (9501-10148) |
|
744-1022, gnl|panTro1|chr5 (30853178-30853795) |
|
744-1022, gnl|rheMac2|chr4 (29894241-29894853) |
|
744-1022, gnl|rn3|chr20 (2922313-2921718) |
| |
|
1025-1137, gnl|bosTau2|chr23 (23176137-23176025) |
|
1025-1137, gnl|Hg17|chr6 (29877020-29877132) |
|
1025-1137, gnl|Mm7|chr17 (33361136-33361248) |
| |
|
1167-1294, gnl|bosTau2|chr23 (20997793-20997921) |
|
1167-1294, gnl|Hg17|chr6 (30365937-30365809) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-259, gnl|bosTau2|chrX (38880467-38880215) |
|
1-259, gnl|Hg17|chrX (21518093-21518350) |
|
1-259, gnl|Mm7|chrX (152492669-152492421) |
| |
|
459-725, gnl|bosTau2|chr23 (23055047-23055315) |
| |
|
744-1022, gnl|bosTau2|chr23 (20999355-20999633) |
|
744-1022, gnl|hg17|chr6 (30364420-30365037) |
|
744-1022, gnl|Hg17|chr6 (30364866-30364624) |
|
744-1022, gnl|mm7|chr17 (34119264-34119855) |
|
744-1022, gnl|Mm7|chr17 (34119701-34119426) |
|
744-1022, gnl|oryCun1|scaffold_160743 (9501-10148) |
|
744-1022, gnl|panTro1|chr5 (30853178-30853795) |
|
744-1022, gnl|rheMac2|chr4 (29894241-29894853) |
|
744-1022, gnl|rn3|chr20 (2922313-2921718) |
| |
|
1025-1137, gnl|bosTau2|chr23 (23176137-23176025) |
|
1025-1137, gnl|Hg17|chr6 (29877020-29877132) |
|
1025-1137, gnl|Mm7|chr17 (33361136-33361248) |
| |
|
1167-1294, gnl|bosTau2|chr23 (20997793-20997921) |
|
1167-1294, gnl|Hg17|chr6 (30365937-30365809) |
|
cbr (2.04761) |
|
nje (0.33184) |
|
cty (0.31224) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
fli (0.202881) |
|
nep (0.183925) |
|
lun (0.150489) |
|
cst (0.140036) |
|
eru (0.120048) |
|
cbr (2.04761) |
|
nje (0.33184) |
|
cty (0.31224) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
fli (0.202881) |
|
nep (0.183925) |
|
lun (0.150489) |
|
cst (0.140036) |
|
eru (0.120048) |
