Non-Coding RNA Search

Ss1.1-Utr1-UTR01D030091.5

Sequence:


               
               TTACATAAAGATCCCTGCCTATAAACCACTGGACAAGGTAATAGGATTATTCCTTTTCTT
TGCCCACTAGTGCCAGGCAGTCTTCCTTGCTCTAGGCTTTGTGATAACTGCGAATTGTCA
CTGGGTGATGGTGTGATGGAGGCCTGGTGTTAGGACTCTTCAGGGGAGGGGGATTACGGA
ATCCACAAATCCATGGAAAACCAGAGTCTTGCAATAGCTCAAGATAATCAGGAGTCAGTT
CTGAAGCATATATATATAAAGAGCTCTGCTAATAAGTCTTTTTTTTTTTTTTCTTTTTTC
TTTTTAGAACAGAGTCTGTGAAATTTAGCAGAGCACTCTGAAAGCCCTCCACATCTGGTC
AGACCTTAAGATAGGGCATTGCCTAATTGGAGAGCATGAGCCCACTTTGGCTATTTATAA
TTACAGAGCCTCTGATTGGATGGTCTACTGCCAAGAACTAGTAAAATCCTAGTTTTAAAA
TCTCCATAAAATGCAACTTAAAAAGCCAACCAATGAAATTGCTCTCTCTTCTTCTCCTCA
TCGGGGCCAAATAGCATCTGCAGCGATAGTAACACATTCCTTAAGGAATGTGCATGACTC
TGTTTACATCTGCCGCCTATCCATGTTGATTGAAAATGTGTAAAACTATTTCACACCCAT
GTAAGGCAAGAAAAAAATGAGTCCACTGGTATTATTCTTTTATAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACATAAAGATCCCTGCCTATAAACCACTGGACAAGGTAATAGGATTATTCCTTTTCTT
TGCCCACTAGTGCCAGGCAGTCTTCCTTGCTCTAGGCTTTGTGATAACTGCGAATTGTCA
CTGGGTGATGGTGTGATGGAGGCCTGGTGTTAGGACTCTTCAGGGGAGGGGGATTACGGA
ATCCACAAATCCATGGAAAACCAGAGTCTTGCAATAGCTCAAGATAATCAGGAGTCAGTT
CTGAAGCATATATATATAAAGAGCTCTGCTAATAAGTCTTTTTTTTTTTTTTCTTTTTTC
TTTTTAGAACAGAGTCTGTGAAATTTAGCAGAGCACTCTGAAAGCCCTCCACATCTGGTC
AGACCTTAAGATAGGGCATTGCCTAATTGGAGAGCATGAGCCCACTTTGGCTATTTATAA
TTACAGAGCCTCTGATTGGATGGTCTACTGCCAAGAACTAGTAAAATCCTAGTTTTAAAA
TCTCCATAAAATGCAACTTAAAAAGCCAACCAATGAAATTGCTCTCTCTTCTTCTCCTCA
TCGGGGCCAAATAGCATCTGCAGCGATAGTAACACATTCCTTAAGGAATGTGCATGACTC
TGTTTACATCTGCCGCCTATCCATGTTGATTGAAAATGTGTAAAACTATTTCACACCCAT
GTAAGGCAAGAAAAAAATGAGTCCACTGGTATTATTCTTTTATAAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-364, - strand, RNAz p=0.762577

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-364, - strand, RNAz p=0.762577

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-702, gnl|bosTau2|chr27 (15340335-15340897)
               

               
               117-702, gnl|Hg17|chr8 (8680104-8679565)
               

               
               117-702, gnl|Mm7|chr8 (34442880-34443479)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-702, gnl|bosTau2|chr27 (15340335-15340897)
               

               
               117-702, gnl|Hg17|chr8 (8680104-8679565)
               

               
               117-702, gnl|Mm7|chr8 (34442880-34443479)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               csk (0.281492)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	117-702, gnl\|bosTau2\|chr27 (15340335-15340897)
	117-702, gnl\|Hg17\|chr8 (8680104-8679565)
	117-702, gnl\|Mm7\|chr8 (34442880-34443479)