Ss1.1-Utr1-UTR01D030100.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACAGCAGAAGGCCTACATAGCCACGCAGGGGCCCCTGGCGGAGAGCACCGAGGACTTC TGGCGCATGCTCTGGGAGCACAACTCCACCATCGTCGTCATGCTGACCCGGCTGCGGGAG ATGGGCAGGGAGAAATGCCACCAGTACTGGCCCGCAGAGCGCTCTGCTCGCTACCAGTAC TTTGTCGTCGACCCGATGGCTGAGTACAACATGCCCCAGTACATCCTGCGCGAGTTCAAG GTCACAGACGCCCGGGATGGGCAGTCGAGGACGATCCGGCAGTTCCAGTTCACGGACTGG CCAGAGCAGGGCGTGCCCAAGACGGGCGAGGGCTTCATCGACTTCATCGGGCAGGTGCAC AAGACCAAGGAGCAGTTCGGGCAGGACGGGCCCATCACGGTGCACTGCAGCGCCGGCGTG GGCCGCACCGGCGTGTTCATCACGCTGAGCATCGTCCTGGAGCGGATGCGCTACGAGGGC GTGGTGGACATGTTCCAGACCGTGAAGACGCTGCGCACACAGCGCCCGGCCATGGTGCAG ACGGAGGACCAGTACCAGCTGTGCTACCGCGCAGCCCTGGAGTACCTCGGCAGCTTTGAC CACTATGCAACGTAACTACCGCCCCCCCTCCTCCGCTGCCCCCGCCTGGGGGCTCTGGAG GGGACCCAGCTCCTCTGAGCCATACCGACCATCGTCCAGCCCTCCTGCACGGATGCTGTT GTTGGCAGAGCACAGCCCTCTGAGATCACAGCGTTTCAGGAACATTGCCACACCAGACGG AGAGCCCAGCACTCCCCTGGGTGAGGGGGCGGGCGGGCAGGCAGGCGCCGGGCCGTCTCT GCCCCCCAGGCCCGCCCCGAGCCGCTTCGAGTTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACAGCAGAAGGCCTACATAGCCACGCAGGGGCCCCTGGCGGAGAGCACCGAGGACTTC TGGCGCATGCTCTGGGAGCACAACTCCACCATCGTCGTCATGCTGACCCGGCTGCGGGAG ATGGGCAGGGAGAAATGCCACCAGTACTGGCCCGCAGAGCGCTCTGCTCGCTACCAGTAC TTTGTCGTCGACCCGATGGCTGAGTACAACATGCCCCAGTACATCCTGCGCGAGTTCAAG GTCACAGACGCCCGGGATGGGCAGTCGAGGACGATCCGGCAGTTCCAGTTCACGGACTGG CCAGAGCAGGGCGTGCCCAAGACGGGCGAGGGCTTCATCGACTTCATCGGGCAGGTGCAC AAGACCAAGGAGCAGTTCGGGCAGGACGGGCCCATCACGGTGCACTGCAGCGCCGGCGTG GGCCGCACCGGCGTGTTCATCACGCTGAGCATCGTCCTGGAGCGGATGCGCTACGAGGGC GTGGTGGACATGTTCCAGACCGTGAAGACGCTGCGCACACAGCGCCCGGCCATGGTGCAG ACGGAGGACCAGTACCAGCTGTGCTACCGCGCAGCCCTGGAGTACCTCGGCAGCTTTGAC CACTATGCAACGTAACTACCGCCCCCCCTCCTCCGCTGCCCCCGCCTGGGGGCTCTGGAG GGGACCCAGCTCCTCTGAGCCATACCGACCATCGTCCAGCCCTCCTGCACGGATGCTGTT GTTGGCAGAGCACAGCCCTCTGAGATCACAGCGTTTCAGGAACATTGCCACACCAGACGG AGAGCCCAGCACTCCCCTGGGTGAGGGGGCGGGCGGGCAGGCAGGCGCCGGGCCGTCTCT GCCCCCCAGGCCCGCCCCGAGCCGCTTCGAGTTCTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 620-738, - strand, RNAz p=0.637305 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 620-738, - strand, RNAz p=0.637305 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr3 (71924950-71925082) | |
| 1-133, gnl|canFam2|chr15 (19603211-19603068) | |
| 1-133, gnl|danRer3|chr2 (8367883-8367746) | |
| 1-133, gnl|dasNov1|scaffold_10403 (42791-42935) | |
| 1-133, gnl|echTel1|scaffold_296722 (44285-44150) | |
| 1-133, gnl|fr1|chrUn (101446507-101446371) | |
| 1-133, gnl|galGal2|chr8 (20446858-20446990) | |
| 1-133, gnl|hg17|chr1 (43754856-43754999) | |
| 1-133, gnl|Hg17|chr1 (43754857-43754989) | |
| 1-133, gnl|loxAfr1|scaffold_1389 (52435-52578) | |
| 1-133, gnl|mm7|chr4 (117587929-117587786) | |
| 1-133, gnl|Mm7|chr4 (117587926-117587794) | |
| 1-133, gnl|monDom2|scaffold_5 (108034515-108034656) | |
| 1-133, gnl|oryCun1|scaffold_86024 (1455-1598) | |
| 1-133, gnl|panTro1|chr1 (44733361-44733504) | |
| 1-133, gnl|rheMac2|chr1 (46531066-46531209) | |
| 1-133, gnl|rn3|chr5 (138679345-138679202) | |
| 1-133, gnl|tetNig1|chrUn_random (107192203-107192070) | |
| 1-133, gnl|xenTro1|scaffold_1 (6659341-6659485) | |
| 251-410, gnl|bosTau2|chr3 (71925629-71925788) | |
| 251-410, gnl|Hg17|chr1 (43755597-43755756) | |
| 251-410, gnl|Mm7|chr4 (117587215-117587056) | |
| 542-876, gnl|bosTau2|chr3 (71926349-71926666) | |
| 542-876, gnl|Hg17|chr1 (43756693-43757030) | |
| 542-876, gnl|Mm7|chr4 (117586333-117586002) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr3 (71924950-71925082) | |
| 1-133, gnl|canFam2|chr15 (19603211-19603068) | |
| 1-133, gnl|danRer3|chr2 (8367883-8367746) | |
| 1-133, gnl|dasNov1|scaffold_10403 (42791-42935) | |
| 1-133, gnl|echTel1|scaffold_296722 (44285-44150) | |
| 1-133, gnl|fr1|chrUn (101446507-101446371) | |
| 1-133, gnl|galGal2|chr8 (20446858-20446990) | |
| 1-133, gnl|hg17|chr1 (43754856-43754999) | |
| 1-133, gnl|Hg17|chr1 (43754857-43754989) | |
| 1-133, gnl|loxAfr1|scaffold_1389 (52435-52578) | |
| 1-133, gnl|mm7|chr4 (117587929-117587786) | |
| 1-133, gnl|Mm7|chr4 (117587926-117587794) | |
| 1-133, gnl|monDom2|scaffold_5 (108034515-108034656) | |
| 1-133, gnl|oryCun1|scaffold_86024 (1455-1598) | |
| 1-133, gnl|panTro1|chr1 (44733361-44733504) | |
| 1-133, gnl|rheMac2|chr1 (46531066-46531209) | |
| 1-133, gnl|rn3|chr5 (138679345-138679202) | |
| 1-133, gnl|tetNig1|chrUn_random (107192203-107192070) | |
| 1-133, gnl|xenTro1|scaffold_1 (6659341-6659485) | |
| 251-410, gnl|bosTau2|chr3 (71925629-71925788) | |
| 251-410, gnl|Hg17|chr1 (43755597-43755756) | |
| 251-410, gnl|Mm7|chr4 (117587215-117587056) | |
| 542-876, gnl|bosTau2|chr3 (71926349-71926666) | |
| 542-876, gnl|Hg17|chr1 (43756693-43757030) | |
| 542-876, gnl|Mm7|chr4 (117586333-117586002) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pty (0.142714) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| cty (0.10408) |