Non-Coding RNA Search

Ss1.1-Utr1-UTR01D040100.5

Sequence:


               
               GATGGGAACTCCTAGAAGAGTTTTCTTTTCTTGCTCAGAAAGGCGGTGATTATTTGATAC
AGAGAGTGGCAGCCGTTTCCATTCTGGGCCCTTGGCAAAATGTTTGCTGCTTGAGTTCCT
GCAGCCTCTGTTAAATTGAAACTGTGCACATCTCTTCCTGGGAGGAAGGTTACTCTTCGG
ACAGGGCTCCTTGGGAGGAATTTTGGCAGAGGGAGGCGAAAAAAAAAAAAAAAAAAGCAG
ATGGAGAGGCCTGCCTCCCTGTCTCTCTGCATCTCCATGGCCTCTTGTTCCCTGCAGCTC
CGTCACAGCTGCCCTCAGCAAGGTCTAGGCCACCTTTGGCCCTGACCTATGTGTCTCTCT
AGGCAGCTGACCTCACTTGCTCCAAAACATTCCAAGGGGCAGCCAAAGTCGGCCTCTAAA
GACAGCAGTGAGGAGCTCCTGCTGTGATGTAATGGGATCGGCAGCGTCTTGGGAGCCCTG
GCGGGGTTGGATCCCCACCCCGGCACAGTGGGTTAAGGATCTGGCATTGCCATAGCTGCA
GCTTAAGTCGCAACTGTGGCTTAGATCTGACCCTGGCCCTGGAATTCCATATGCCGTGGG
GTGGCCAAAAATGAAAATAAAATAAAAGACAGCAATGACTCTCATCATGCCCCTACCTAA
AGGTCTCCCACGGCTTCCTGAAGGTCTTGGTATAAGTCCAAGGTGACTCCCGCCACCCTC
TGACCTCATTTCACACCTCCTCCCCTTCACTCACCCTCCCATAGCCCTGTGCTGGCCCAG
CCAGTGGCCACGAGCCATATGGGGCTGCTGAGCCCTTGGAAAGGGGCCAGTCCAAACTGA
GGCAAGCTCGTCTGCATAGAATACATGTTTGCTCCCAAAGCTCCAGTACAAAAAAAGATG
TAAAATTGATCATTTTTATCGTGATTCTGGGAGTTCCCATTGTGGCTCGGCAGAGACAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGGAACTCCTAGAAGAGTTTTCTTTTCTTGCTCAGAAAGGCGGTGATTATTTGATAC
AGAGAGTGGCAGCCGTTTCCATTCTGGGCCCTTGGCAAAATGTTTGCTGCTTGAGTTCCT
GCAGCCTCTGTTAAATTGAAACTGTGCACATCTCTTCCTGGGAGGAAGGTTACTCTTCGG
ACAGGGCTCCTTGGGAGGAATTTTGGCAGAGGGAGGCGAAAAAAAAAAAAAAAAAAGCAG
ATGGAGAGGCCTGCCTCCCTGTCTCTCTGCATCTCCATGGCCTCTTGTTCCCTGCAGCTC
CGTCACAGCTGCCCTCAGCAAGGTCTAGGCCACCTTTGGCCCTGACCTATGTGTCTCTCT
AGGCAGCTGACCTCACTTGCTCCAAAACATTCCAAGGGGCAGCCAAAGTCGGCCTCTAAA
GACAGCAGTGAGGAGCTCCTGCTGTGATGTAATGGGATCGGCAGCGTCTTGGGAGCCCTG
GCGGGGTTGGATCCCCACCCCGGCACAGTGGGTTAAGGATCTGGCATTGCCATAGCTGCA
GCTTAAGTCGCAACTGTGGCTTAGATCTGACCCTGGCCCTGGAATTCCATATGCCGTGGG
GTGGCCAAAAATGAAAATAAAATAAAAGACAGCAATGACTCTCATCATGCCCCTACCTAA
AGGTCTCCCACGGCTTCCTGAAGGTCTTGGTATAAGTCCAAGGTGACTCCCGCCACCCTC
TGACCTCATTTCACACCTCCTCCCCTTCACTCACCCTCCCATAGCCCTGTGCTGGCCCAG
CCAGTGGCCACGAGCCATATGGGGCTGCTGAGCCCTTGGAAAGGGGCCAGTCCAAACTGA
GGCAAGCTCGTCTGCATAGAATACATGTTTGCTCCCAAAGCTCCAGTACAAAAAAAGATG
TAAAATTGATCATTTTTATCGTGATTCTGGGAGTTCCCATTGTGGCTCGGCAGAGACAAC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               13-193, gnl|bosTau2|chr13 (43043687-43043506)
               

               
               13-193, gnl|canFam2|chr24 (24978130-24978291)
               

               
               13-193, gnl|dasNov1|scaffold_2557 (44502-44669)
               

               
               13-193, gnl|hg17|chr20 (30718973-30719140)
               

               
               13-193, gnl|Hg17|chr20 (30719444-30718972)
               

               
               13-193, gnl|loxAfr1|scaffold_38749 (23956-23801)
               

               
               13-193, gnl|mm7|chr2 (153342166-153342327)
               

               
               13-193, gnl|Mm7|chr2 (153342346-153342168)
               

               
               13-193, gnl|panTro1|chr21 (32414415-32414582)
               

               
               13-193, gnl|rheMac2|chr10 (31881528-31881361)
               

               
               13-193, gnl|rn3|chr3 (143878978-143879139)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-193, gnl|bosTau2|chr13 (43043687-43043506)
               

               
               13-193, gnl|canFam2|chr24 (24978130-24978291)
               

               
               13-193, gnl|dasNov1|scaffold_2557 (44502-44669)
               

               
               13-193, gnl|hg17|chr20 (30718973-30719140)
               

               
               13-193, gnl|Hg17|chr20 (30719444-30718972)
               

               
               13-193, gnl|loxAfr1|scaffold_38749 (23956-23801)
               

               
               13-193, gnl|mm7|chr2 (153342166-153342327)
               

               
               13-193, gnl|Mm7|chr2 (153342346-153342168)
               

               
               13-193, gnl|panTro1|chr21 (32414415-32414582)
               

               
               13-193, gnl|rheMac2|chr10 (31881528-31881361)
               

               
               13-193, gnl|rn3|chr3 (143878978-143879139)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	13-193, gnl\|bosTau2\|chr13 (43043687-43043506)
	13-193, gnl\|canFam2\|chr24 (24978130-24978291)
	13-193, gnl\|dasNov1\|scaffold_2557 (44502-44669)
	13-193, gnl\|hg17\|chr20 (30718973-30719140)
	13-193, gnl\|Hg17\|chr20 (30719444-30718972)
	13-193, gnl\|loxAfr1\|scaffold_38749 (23956-23801)
	13-193, gnl\|mm7\|chr2 (153342166-153342327)
	13-193, gnl\|Mm7\|chr2 (153342346-153342168)
	13-193, gnl\|panTro1\|chr21 (32414415-32414582)
	13-193, gnl\|rheMac2\|chr10 (31881528-31881361)
	13-193, gnl\|rn3\|chr3 (143878978-143879139)