Ss1.1-Utr1-UTR01D050089.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCTCTGCCGTCCAGCGTTGCCGAGCCTTCCTCTTTGGTCGCCGCGTCCTTGTCCTTG GCTGGCGTCAGGAAGATGGCCACAAACTTCCTGGTGCACGAGAAGGTCTGGTTCGACAAG TTCAAATACGATGATGCAGAGAGGAAATTCTATGAGCAGATGAACGGGCCTGTGGCTGGC TCCTCACGCCAGGAGAACGGCGCCAGCGTGATCCTCCGTGACATCGCGAGAGCCAGAGAA AACATCCAGAAGTCCCTGGCCGGAAGCTCAGGCCCTGGGGCCTCCAGCGGGCCCAGTGGA GACCACAGTGAGCTGGTCATCCGGATCGCCAGCCTGGAAGTGGAGAACCAGAGCCTGCGA GGGGTGGTACAGGATCTGCAGCAGGCCGTCTCCAAGCTGGAGGCCCGGCTGAGTGCGCTC GAGAAGACCTCGCCCGCCCACCGTGCCACAGCCCCACAGACCCAGCACGTGTCTCCCATG CGCCAAGTGGAGCCCCCCAGCCGGAAGGCGGCCACGGCCACAGAGGACGACGAGGACGAT GACATTGACCTGTTCGGCAGCGACGAAGAGGAGGACAAGGAGGCTGCCCGGCTGCGGGAG GAGAGGCTGCGGCAATACGCCGAGAAAAAGGCCAAGAAGCCCGCCCTGGTGGCCAAGTCC TCCATCCTGCTGGATGTCAAGCCTTGGGACGACGAGACGGACATGGCCCAGCTGGAGGCC TGTGTGCGCTCCATCCAGCTGGACGGGCTGACCTGGGGCGGCTCCAAGCTGGTGCCTGTG GGCTACGGCATCCGCAAGCTGCAGATCCAGTGCGTGGTGGAGGACGACAAGGTGGGCACC GACCTGCTGGAAGAGGAGATCACCAAGTTCGAGGAGCACGTGCAGAGTGTGGACATTGCC GCCTTCAACAAGATCTGAGAGCCCCGGCCCGCACCTGAGAGTGCGATGCCTTGCAGCCAA TAAAGACTGAGATTCCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCTCTGCCGTCCAGCGTTGCCGAGCCTTCCTCTTTGGTCGCCGCGTCCTTGTCCTTG GCTGGCGTCAGGAAGATGGCCACAAACTTCCTGGTGCACGAGAAGGTCTGGTTCGACAAG TTCAAATACGATGATGCAGAGAGGAAATTCTATGAGCAGATGAACGGGCCTGTGGCTGGC TCCTCACGCCAGGAGAACGGCGCCAGCGTGATCCTCCGTGACATCGCGAGAGCCAGAGAA AACATCCAGAAGTCCCTGGCCGGAAGCTCAGGCCCTGGGGCCTCCAGCGGGCCCAGTGGA GACCACAGTGAGCTGGTCATCCGGATCGCCAGCCTGGAAGTGGAGAACCAGAGCCTGCGA GGGGTGGTACAGGATCTGCAGCAGGCCGTCTCCAAGCTGGAGGCCCGGCTGAGTGCGCTC GAGAAGACCTCGCCCGCCCACCGTGCCACAGCCCCACAGACCCAGCACGTGTCTCCCATG CGCCAAGTGGAGCCCCCCAGCCGGAAGGCGGCCACGGCCACAGAGGACGACGAGGACGAT GACATTGACCTGTTCGGCAGCGACGAAGAGGAGGACAAGGAGGCTGCCCGGCTGCGGGAG GAGAGGCTGCGGCAATACGCCGAGAAAAAGGCCAAGAAGCCCGCCCTGGTGGCCAAGTCC TCCATCCTGCTGGATGTCAAGCCTTGGGACGACGAGACGGACATGGCCCAGCTGGAGGCC TGTGTGCGCTCCATCCAGCTGGACGGGCTGACCTGGGGCGGCTCCAAGCTGGTGCCTGTG GGCTACGGCATCCGCAAGCTGCAGATCCAGTGCGTGGTGGAGGACGACAAGGTGGGCACC GACCTGCTGGAAGAGGAGATCACCAAGTTCGAGGAGCACGTGCAGAGTGTGGACATTGCC GCCTTCAACAAGATCTGAGAGCCCCGGCCCGCACCTGAGAGTGCGATGCCTTGCAGCCAA TAAAGACTGAGATTCCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 69-193, gnl|bosTau2|chr14 (634815-634691) | |
| 69-193, gnl|canFam2|chr13 (40275331-40275446) | |
| 69-193, gnl|canFam2|chr13 (40275445-40275356) | |
| 69-193, gnl|canFam2|chr13 (40275448-40275349) | |
| 69-193, gnl|danRer3|chr16 (45590876-45590932) | |
| 69-193, gnl|danRer3|chrUn (103246216-103246114) | |
| 69-193, gnl|danRer3|chrUn (103246115-103246211) | |
| 69-193, gnl|dasNov1|scaffold_190336 (3409-3524) | |
| 69-193, gnl|dasNov1|scaffold_190336 (3523-3434) | |
| 69-193, gnl|dasNov1|scaffold_190336 (3526-3427) | |
| 69-193, gnl|echTel1|scaffold_156985 (9556-9457) | |
| 69-193, gnl|echTel1|scaffold_156985 (9458-9531) | |
| 69-193, gnl|echTel1|scaffold_156985 (9455-9538) | |
| 69-193, gnl|fr1|chrUn (46711560-46711677) | |
| 69-193, gnl|fr1|chrUn (46711656-46711584) | |
| 69-193, gnl|fr1|chrUn (46711676-46711577) | |
| 69-193, gnl|galGal2|chr2 (135114924-135114806) | |
| 69-193, gnl|galGal2|chr2 (135114807-135114896) | |
| 69-193, gnl|galGal2|chr2 (135114807-135114906) | |
| 69-193, gnl|hg17|chr13 (31424711-31424800) | |
| 69-193, gnl|hg17|chr7 (63767542-63767641) | |
| 69-193, gnl|hg17|chr8 (144740052-144740167) | |
| 69-193, gnl|Hg17|chr8 (144740165-144740041) | |
| 69-193, gnl|loxAfr1|scaffold_66514 (8323-8438) | |
| 69-193, gnl|loxAfr1|scaffold_66514 (8437-8348) | |
| 69-193, gnl|loxAfr1|scaffold_66514 (8440-8341) | |
| 69-193, gnl|mm7|chr11 (111385135-111385224) | |
| 69-193, gnl|mm7|chr11 (111385132-111385231) | |
| 69-193, gnl|mm7|chr15 (75983690-75983805) | |
| 69-193, gnl|Mm7|chr15 (75983803-75983679) | |
| 69-193, gnl|monDom2|scaffold_79 (4865089-4864974) | |
| 69-193, gnl|oryCun1|scaffold_99152 (4872-4787) | |
| 69-193, gnl|oryCun1|scaffold_99152 (4878-4780) | |
| 69-193, gnl|panTro1|chr14 (30620772-30620861) | |
| 69-193, gnl|panTro1|chr6 (65367833-65367932) | |
| 69-193, gnl|panTro1|chr7 (148007718-148007833) | |
| 69-193, gnl|rheMac2|chr17 (11320955-11321044) | |
| 69-193, gnl|rheMac2|chr3 (60586150-60586051) | |
| 69-193, gnl|rheMac2|chr8 (146218023-146218138) | |
| 69-193, gnl|rn3|chr7 (113910929-113911044) | |
| 69-193, gnl|rn3|chr7 (113911043-113910954) | |
| 69-193, gnl|rn3|chr7 (113911046-113910947) | |
| 69-193, gnl|tetNig1|chrUn_random (45288319-45288415) | |
| 69-193, gnl|tetNig1|chrUn_random (45288415-45288343) | |
| 69-193, gnl|tetNig1|chrUn_random (45288435-45288336) | |
| 69-193, gnl|xenTro1|scaffold_847 (181716-181834) | |
| 364-465, gnl|bosTau2|chr14 (631404-631303) | |
| 364-465, gnl|Hg17|chr8 (144734468-144734367) | |
| 364-465, gnl|Mm7|chr15 (75979289-75979188) | |
| 517-923, gnl|bosTau2|chr10 (14390402-14389994) | |
| 517-923, gnl|Hg17|chrX (24566570-24566161) | |
| 517-923, gnl|Mm7|chr1 (63419171-63420278) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-193, gnl|bosTau2|chr14 (634815-634691) | |
| 69-193, gnl|canFam2|chr13 (40275331-40275446) | |
| 69-193, gnl|canFam2|chr13 (40275445-40275356) | |
| 69-193, gnl|canFam2|chr13 (40275448-40275349) | |
| 69-193, gnl|danRer3|chr16 (45590876-45590932) | |
| 69-193, gnl|danRer3|chrUn (103246216-103246114) | |
| 69-193, gnl|danRer3|chrUn (103246115-103246211) | |
| 69-193, gnl|dasNov1|scaffold_190336 (3409-3524) | |
| 69-193, gnl|dasNov1|scaffold_190336 (3523-3434) | |
| 69-193, gnl|dasNov1|scaffold_190336 (3526-3427) | |
| 69-193, gnl|echTel1|scaffold_156985 (9556-9457) | |
| 69-193, gnl|echTel1|scaffold_156985 (9458-9531) | |
| 69-193, gnl|echTel1|scaffold_156985 (9455-9538) | |
| 69-193, gnl|fr1|chrUn (46711560-46711677) | |
| 69-193, gnl|fr1|chrUn (46711656-46711584) | |
| 69-193, gnl|fr1|chrUn (46711676-46711577) | |
| 69-193, gnl|galGal2|chr2 (135114924-135114806) | |
| 69-193, gnl|galGal2|chr2 (135114807-135114896) | |
| 69-193, gnl|galGal2|chr2 (135114807-135114906) | |
| 69-193, gnl|hg17|chr13 (31424711-31424800) | |
| 69-193, gnl|hg17|chr7 (63767542-63767641) | |
| 69-193, gnl|hg17|chr8 (144740052-144740167) | |
| 69-193, gnl|Hg17|chr8 (144740165-144740041) | |
| 69-193, gnl|loxAfr1|scaffold_66514 (8323-8438) | |
| 69-193, gnl|loxAfr1|scaffold_66514 (8437-8348) | |
| 69-193, gnl|loxAfr1|scaffold_66514 (8440-8341) | |
| 69-193, gnl|mm7|chr11 (111385135-111385224) | |
| 69-193, gnl|mm7|chr11 (111385132-111385231) | |
| 69-193, gnl|mm7|chr15 (75983690-75983805) | |
| 69-193, gnl|Mm7|chr15 (75983803-75983679) | |
| 69-193, gnl|monDom2|scaffold_79 (4865089-4864974) | |
| 69-193, gnl|oryCun1|scaffold_99152 (4872-4787) | |
| 69-193, gnl|oryCun1|scaffold_99152 (4878-4780) | |
| 69-193, gnl|panTro1|chr14 (30620772-30620861) | |
| 69-193, gnl|panTro1|chr6 (65367833-65367932) | |
| 69-193, gnl|panTro1|chr7 (148007718-148007833) | |
| 69-193, gnl|rheMac2|chr17 (11320955-11321044) | |
| 69-193, gnl|rheMac2|chr3 (60586150-60586051) | |
| 69-193, gnl|rheMac2|chr8 (146218023-146218138) | |
| 69-193, gnl|rn3|chr7 (113910929-113911044) | |
| 69-193, gnl|rn3|chr7 (113911043-113910954) | |
| 69-193, gnl|rn3|chr7 (113911046-113910947) | |
| 69-193, gnl|tetNig1|chrUn_random (45288319-45288415) | |
| 69-193, gnl|tetNig1|chrUn_random (45288415-45288343) | |
| 69-193, gnl|tetNig1|chrUn_random (45288435-45288336) | |
| 69-193, gnl|xenTro1|scaffold_847 (181716-181834) | |
| 364-465, gnl|bosTau2|chr14 (631404-631303) | |
| 364-465, gnl|Hg17|chr8 (144734468-144734367) | |
| 364-465, gnl|Mm7|chr15 (75979289-75979188) | |
| 517-923, gnl|bosTau2|chr10 (14390402-14389994) | |
| 517-923, gnl|Hg17|chrX (24566570-24566161) | |
| 517-923, gnl|Mm7|chr1 (63419171-63420278) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| mcp (1.53584) | |
| nco (0.970403) | |
| hyp (0.85702) | |
| pty (0.856287) | |
| mas (0.84122) | |
| jca (0.797721) | |
| cov (0.792917) | |
| cag (0.755972) | |
| cly (0.723851) | |
| ill (0.702371) | |
| ton (0.702001) | |
| eep (0.61282) | |
| fli (0.608643) | |
| col (0.585023) | |
| nmm (0.531209) | |
| nbm (0.496623) | |
| cki (0.495704) | |
| csp (0.483559) | |
| pla (0.401016) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| nep (0.36785) | |
| eru (0.360144) | |
| nje (0.33184) | |
| cga (0.279096) | |
| nca (0.273748) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| mga (0.160205) | |
| cli (0.152812) | |
| eli (0.151814) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| bla (0.124347) | |
| ebs (0.118301) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (1.53584) | |
| nco (0.970403) | |
| hyp (0.85702) | |
| pty (0.856287) | |
| mas (0.84122) | |
| jca (0.797721) | |
| cov (0.792917) | |
| cag (0.755972) | |
| cly (0.723851) | |
| ill (0.702371) | |
| ton (0.702001) | |
| eep (0.61282) | |
| fli (0.608643) | |
| col (0.585023) | |
| nmm (0.531209) | |
| nbm (0.496623) | |
| cki (0.495704) | |
| csp (0.483559) | |
| pla (0.401016) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| nep (0.36785) | |
| eru (0.360144) | |
| nje (0.33184) | |
| cga (0.279096) | |
| nca (0.273748) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| mga (0.160205) | |
| cli (0.152812) | |
| eli (0.151814) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| bla (0.124347) | |
| ebs (0.118301) |