Ss1.1-Utr1-UTR01D050101.5.5
|
CTTCTTTGCTTCTCTGGCCCGAGGCCCCAGTGCGCACCGAAGATGGCGGCGGCGGCGGCG
GCGGCGGCGGGAAGGTTGCTCCGGGCTTCGGTTATCCGACATGTGAGTGCCGTTCCTTGG
GGCATTTCTGCCTCTGCAGCCCTTAGGCCTGCTCCTTCTCGAAGAACATGCTTGACAAGT
GTGCTGTGGTCTGGTTCCAGTCAAGCAAAATTCGCCTTTAGCACCAGTTCTTCCCACCAT
TCCCCTGCCGTCACCCAGCATGCGCCCTATTTTAAGGGCACAGCCGTTGTCAATGGAGAG
TTCAAAGAACTAAGCCTTGATGACTATAAGGGGAAATACTTGGTGCTCTTCTTCTATCCT
TTGGATTTCACCTTTGTGTGTCCTACAGAAATTATTGCTTTCAGTGACAAAGCCAATGAA
TTTCATGATGTGAATTGTGAAGTTGTTGCCGTGTCAGTGGATTCCCACTTCAGCCATCTG
GCTTGGATAAATACACCAAGGAAGAATGGCGGTTTGGGCCACATGAACATTGCTCTCCTG
TCGGATTTGACCAAGCAAATTTCCCGAGACTACGGTGTGCTGTTAGAAGGTCCCGGTCTT
GCCCTGAGAGGTCTCTTCATAATTGACCCCAATGGAGTCATCAAGCATTTGAGTGTCAAT
GATCTCCCAGTGGGCCGAAGCGTGGAAGAGACCCTCCGCTTGGTGAAGGCGTTCCAGTTT
GTGGAAACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCGGATTCTCCTACAATCAAG
CCACATCCGACTGATTCCAAAGAATACTTTGAGAAGGTCCATCAGTAGACCATCCCTTGT
GCACCTGCCGCTTCCCTCCCCAGAGAAGAGCCACAGTTGGGATTCACGTTTAGCATTTCA
GAGATGATTGTAGAAGACAAAACACCTCAATTATGCTTGTCTTCCTAAGTATCACTTTAA
ATGTTTTGTTTTTGTAACATTGGCCAAGGCTTTTAAAATATGGTTAGTTACTAACAGGAG
GAGTCCTCTACTGGTGATGTATGGCTGGCTGGCTAGTTCCTTTTGAGTGTTTAGTTCACC
TGTTTCTTGAATCATGTCTTCAGAGGGAAAAGGAAACAACTCTTCTTTCTTAGCCTTACT
TGAACCCTTTTGTACACTAGCGTAGTAGTAGTACAACAGCATTGAAAGCTTCTGATCAGG
GGTCCTGAAGATTTCTTCTTGAATTTCTCTGTGTTACCTGAATTTTCCTTTAAGTAACAA
AGATCAGTTTTAAGTCATTACCGTCAGGTCTAATTTAACACTTGCTTTAGATGCATGTGT
GATTGAAACATATGTGAATCATGTTTTTTTTTTTTAAAAAAAAATTCAGTGGCAAAGTGA
CTTAAGTGATCATGCATGTCCCCCATCCCTGCGGTTTATAGTTTATGGAGTTATTTTACT
TAGTGTTTACATACATTTCTAATATGGATTTGGCAGAATTATAAAGAATACTTATTGAAT
CCAGGGATTGAAGTTTGATTTTGAATCATTGTAATTATCTTCTTTCTTGACGTGCTCAAT
GTAAAAAATATGATAAAAAATAAACATATTTAAACGTAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTCTTTGCTTCTCTGGCCCGAGGCCCCAGTGCGCACCGAAGATGGCGGCGGCGGCGGCG
GCGGCGGCGGGAAGGTTGCTCCGGGCTTCGGTTATCCGACATGTGAGTGCCGTTCCTTGG
GGCATTTCTGCCTCTGCAGCCCTTAGGCCTGCTCCTTCTCGAAGAACATGCTTGACAAGT
GTGCTGTGGTCTGGTTCCAGTCAAGCAAAATTCGCCTTTAGCACCAGTTCTTCCCACCAT
TCCCCTGCCGTCACCCAGCATGCGCCCTATTTTAAGGGCACAGCCGTTGTCAATGGAGAG
TTCAAAGAACTAAGCCTTGATGACTATAAGGGGAAATACTTGGTGCTCTTCTTCTATCCT
TTGGATTTCACCTTTGTGTGTCCTACAGAAATTATTGCTTTCAGTGACAAAGCCAATGAA
TTTCATGATGTGAATTGTGAAGTTGTTGCCGTGTCAGTGGATTCCCACTTCAGCCATCTG
GCTTGGATAAATACACCAAGGAAGAATGGCGGTTTGGGCCACATGAACATTGCTCTCCTG
TCGGATTTGACCAAGCAAATTTCCCGAGACTACGGTGTGCTGTTAGAAGGTCCCGGTCTT
GCCCTGAGAGGTCTCTTCATAATTGACCCCAATGGAGTCATCAAGCATTTGAGTGTCAAT
GATCTCCCAGTGGGCCGAAGCGTGGAAGAGACCCTCCGCTTGGTGAAGGCGTTCCAGTTT
GTGGAAACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCGGATTCTCCTACAATCAAG
CCACATCCGACTGATTCCAAAGAATACTTTGAGAAGGTCCATCAGTAGACCATCCCTTGT
GCACCTGCCGCTTCCCTCCCCAGAGAAGAGCCACAGTTGGGATTCACGTTTAGCATTTCA
GAGATGATTGTAGAAGACAAAACACCTCAATTATGCTTGTCTTCCTAAGTATCACTTTAA
ATGTTTTGTTTTTGTAACATTGGCCAAGGCTTTTAAAATATGGTTAGTTACTAACAGGAG
GAGTCCTCTACTGGTGATGTATGGCTGGCTGGCTAGTTCCTTTTGAGTGTTTAGTTCACC
TGTTTCTTGAATCATGTCTTCAGAGGGAAAAGGAAACAACTCTTCTTTCTTAGCCTTACT
TGAACCCTTTTGTACACTAGCGTAGTAGTAGTACAACAGCATTGAAAGCTTCTGATCAGG
GGTCCTGAAGATTTCTTCTTGAATTTCTCTGTGTTACCTGAATTTTCCTTTAAGTAACAA
AGATCAGTTTTAAGTCATTACCGTCAGGTCTAATTTAACACTTGCTTTAGATGCATGTGT
GATTGAAACATATGTGAATCATGTTTTTTTTTTTTAAAAAAAAATTCAGTGGCAAAGTGA
CTTAAGTGATCATGCATGTCCCCCATCCCTGCGGTTTATAGTTTATGGAGTTATTTTACT
TAGTGTTTACATACATTTCTAATATGGATTTGGCAGAATTATAAAGAATACTTATTGAAT
CCAGGGATTGAAGTTTGATTTTGAATCATTGTAATTATCTTCTTTCTTGACGTGCTCAAT
GTAAAAAATATGATAAAAAATAAACATATTTAAACGTAAAAAAAAAAAAAAAAAAAAAAA |
|
gi|2507170|sp|P35705|PRDX3_BOVIN |
Protein identifier
|
gi|2507170|sp|P35705|PRDX3_BOVIN |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
87-228, gnl|bosTau2|chr26 (26033340-26033481) |
|
87-228, gnl|canFam2|chr16 (19793965-19794106) |
|
87-228, gnl|dasNov1|scaffold_145514 (2317-2456) |
|
87-228, gnl|echTel1|scaffold_297356 (38815-38949) |
|
87-228, gnl|Hg17|chr10 (120926659-120926521) |
|
87-228, gnl|hg17|chr22 (37443841-37443981) |
|
87-228, gnl|loxAfr1|scaffold_48811 (9027-9162) |
|
87-228, gnl|mm7|chr19 (60795836-60795973) |
|
87-228, gnl|Mm7|chr19 (60795975-60795834) |
|
87-228, gnl|monDom2|scaffold_54 (1790346-1790208) |
|
87-228, gnl|oryCun1|scaffold_116095 (6939-7071) |
|
87-228, gnl|panTro1|chr23 (37677562-37677702) |
|
87-228, gnl|rheMac2|chr10 (82637665-82637786) |
|
87-228, gnl|rn3|chr1 (107389499-107389632) |
| |
|
312-869, gnl|bosTau2|chr11 (35830531-35831082) |
|
312-869, gnl|Hg17|chr22 (37443743-37443206) |
|
312-869, gnl|Mm7|chr4 (26663789-26663237) |
| |
|
965-1609, gnl|bosTau2|chr26 (26211829-26212491) |
|
965-1609, gnl|Hg17|chr22 (37443113-37442483) |
| |
|
987-1602, gnl|bosTau2|chr11 (35831428-35832040) |
|
987-1602, gnl|Hg17|chr22 (37443105-37442475) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
87-228, gnl|bosTau2|chr26 (26033340-26033481) |
|
87-228, gnl|canFam2|chr16 (19793965-19794106) |
|
87-228, gnl|dasNov1|scaffold_145514 (2317-2456) |
|
87-228, gnl|echTel1|scaffold_297356 (38815-38949) |
|
87-228, gnl|Hg17|chr10 (120926659-120926521) |
|
87-228, gnl|hg17|chr22 (37443841-37443981) |
|
87-228, gnl|loxAfr1|scaffold_48811 (9027-9162) |
|
87-228, gnl|mm7|chr19 (60795836-60795973) |
|
87-228, gnl|Mm7|chr19 (60795975-60795834) |
|
87-228, gnl|monDom2|scaffold_54 (1790346-1790208) |
|
87-228, gnl|oryCun1|scaffold_116095 (6939-7071) |
|
87-228, gnl|panTro1|chr23 (37677562-37677702) |
|
87-228, gnl|rheMac2|chr10 (82637665-82637786) |
|
87-228, gnl|rn3|chr1 (107389499-107389632) |
| |
|
312-869, gnl|bosTau2|chr11 (35830531-35831082) |
|
312-869, gnl|Hg17|chr22 (37443743-37443206) |
|
312-869, gnl|Mm7|chr4 (26663789-26663237) |
| |
|
965-1609, gnl|bosTau2|chr26 (26211829-26212491) |
|
965-1609, gnl|Hg17|chr22 (37443113-37442483) |
| |
|
987-1602, gnl|bosTau2|chr11 (35831428-35832040) |
|
987-1602, gnl|Hg17|chr22 (37443105-37442475) |
|
mgp (4.15225) |
|
sug (3.94603) |
|
tbr (3.5461) |
|
isp (3.00752) |
|
vin (2.99302) |
|
fat (2.06398) |
|
sme (1.83262) |
|
kid (1.68656) |
|
lun (1.65538) |
|
bfe (1.64843) |
|
hea (1.63599) |
|
ste (1.48729) |
|
thg (1.3947) |
|
ldo (1.35804) |
|
lyg (1.33103) |
|
tra (1.10783) |
|
fco (1.10046) |
|
ssp (1.08416) |
|
ret (1.02987) |
|
rec (0.865351) |
|
spl (0.859107) |
|
nms (0.855432) |
|
cki (0.826173) |
|
fce (0.814775) |
|
mga (0.801025) |
|
spc (0.793561) |
|
fty (0.703359) |
|
cst (0.700182) |
|
cty (0.62448) |
|
ski (0.586941) |
|
gul (0.532765) |
|
nje (0.49776) |
|
eje (0.494169) |
|
nco (0.485201) |
|
med (0.465008) |
|
lin (0.436808) |
|
hyp (0.42851) |
|
lnt (0.426925) |
|
csk (0.422238) |
|
mas (0.42061) |
|
tes (0.415628) |
|
che (0.408942) |
|
ova (0.387397) |
|
ton (0.351) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
eye (0.341006) |
|
cag (0.302389) |
|
liv (0.292569) |
|
bla (0.248694) |
|
pgl (0.236967) |
|
pan (0.23596) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
cli (0.152812) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
eep (0.122564) |
|
cly (0.120642) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
mgp (4.15225) |
|
sug (3.94603) |
|
tbr (3.5461) |
|
isp (3.00752) |
|
vin (2.99302) |
|
fat (2.06398) |
|
sme (1.83262) |
|
kid (1.68656) |
|
lun (1.65538) |
|
bfe (1.64843) |
|
hea (1.63599) |
|
ste (1.48729) |
|
thg (1.3947) |
|
ldo (1.35804) |
|
lyg (1.33103) |
|
tra (1.10783) |
|
fco (1.10046) |
|
ssp (1.08416) |
|
ret (1.02987) |
|
rec (0.865351) |
|
spl (0.859107) |
|
nms (0.855432) |
|
cki (0.826173) |
|
fce (0.814775) |
|
mga (0.801025) |
|
spc (0.793561) |
|
fty (0.703359) |
|
cst (0.700182) |
|
cty (0.62448) |
|
ski (0.586941) |
|
gul (0.532765) |
|
nje (0.49776) |
|
eje (0.494169) |
|
nco (0.485201) |
|
med (0.465008) |
|
lin (0.436808) |
|
hyp (0.42851) |
|
lnt (0.426925) |
|
csk (0.422238) |
|
mas (0.42061) |
|
tes (0.415628) |
|
che (0.408942) |
|
ova (0.387397) |
|
ton (0.351) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
eye (0.341006) |
|
cag (0.302389) |
|
liv (0.292569) |
|
bla (0.248694) |
|
pgl (0.236967) |
|
pan (0.23596) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
cli (0.152812) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
eep (0.122564) |
|
cly (0.120642) |
|
jca (0.11396) |
|
nbm (0.0993246) |
