Non-Coding RNA Search

Ss1.1-Utr1-UTR01D070084.5

Sequence:


               
               ATAAGCACAGAGGCTCAAGTAGCGATCGTTGCAGCAGCGAGGATGAGCGCGGCCGGGGGA
GATCTCAAAAGAAGCTGGCGAATTCTTCCCCTGTTTTGGCCAAAGTCCCTGGATATGGCT
TACAGCTCAGGAACTCCGACCGGAGCCAGGGACCGAGGGGTCCTCCGGCGGCTGAGCAGC
GGGCAGGGCATGGGTTGAAGAATTACTCCAGGTCTAGAAGCTCCTCTCCCTCACCTCCGA
GACACGCCAGCAAGAAGAGCACCAGAGAAGCAGGGTCCCGGGACAGGAGGTCCCGGTCCC
CAGGCAGAAGGTCCCGGTCCCCCAGGCCAAGCAAACCGCACAACTCTAAGGTAAGCAGGA
GAGACAGAGGCCGAACTAAGAGCCCATCACCTAAAAAAGAGGTCTACCAAAGGCGGCATG
CTCCAGGGTACACCAGAAAGCTCTCATCGGAGGAGCTGGAGCGAAAACGGCAAGAGATGA
TGGAGAACGCCAAGTGGCGGGAGGCGGAGAGGCTCAACATCCTCAAGAGACACGCCAAGG
ACGACGAGCGCGAGCAGAGGCTGCAGAAGCTGGACTCTCGGGATGGCAAGTTCCTCCACC
GCATGAAGCTAGAGAGCGCATCTACCTCCTCTCTGGAAGATCGGGTGAAGCGGAATATTT
ATTCCCTGCAGAGGACCTCAGTAGCTCTGGAGAAGAACTTTATGAAAAGATGAAAGCCAT
CGCCTGTCTTGCTGGTTTTCCTGAAGTTTTCAGGGAGGCTGCTGACCCCTTACAAATTCT
CTTTATAAGAGTTCAAATGGCTTCTTCCACAGATGTCAAACCACCACTGTTCAAAGTGAC
TGTCCCCCGTGGATCGCAGAAACAGCCCATTTCTTTTGAGAACCCGTGTGACTTGCTCTA
TGGGACCCTCGGTAACTTTTGCTGGGTGCAGAGCAGATGTTAACTTTTTTTTGTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGCACAGAGGCTCAAGTAGCGATCGTTGCAGCAGCGAGGATGAGCGCGGCCGGGGGA
GATCTCAAAAGAAGCTGGCGAATTCTTCCCCTGTTTTGGCCAAAGTCCCTGGATATGGCT
TACAGCTCAGGAACTCCGACCGGAGCCAGGGACCGAGGGGTCCTCCGGCGGCTGAGCAGC
GGGCAGGGCATGGGTTGAAGAATTACTCCAGGTCTAGAAGCTCCTCTCCCTCACCTCCGA
GACACGCCAGCAAGAAGAGCACCAGAGAAGCAGGGTCCCGGGACAGGAGGTCCCGGTCCC
CAGGCAGAAGGTCCCGGTCCCCCAGGCCAAGCAAACCGCACAACTCTAAGGTAAGCAGGA
GAGACAGAGGCCGAACTAAGAGCCCATCACCTAAAAAAGAGGTCTACCAAAGGCGGCATG
CTCCAGGGTACACCAGAAAGCTCTCATCGGAGGAGCTGGAGCGAAAACGGCAAGAGATGA
TGGAGAACGCCAAGTGGCGGGAGGCGGAGAGGCTCAACATCCTCAAGAGACACGCCAAGG
ACGACGAGCGCGAGCAGAGGCTGCAGAAGCTGGACTCTCGGGATGGCAAGTTCCTCCACC
GCATGAAGCTAGAGAGCGCATCTACCTCCTCTCTGGAAGATCGGGTGAAGCGGAATATTT
ATTCCCTGCAGAGGACCTCAGTAGCTCTGGAGAAGAACTTTATGAAAAGATGAAAGCCAT
CGCCTGTCTTGCTGGTTTTCCTGAAGTTTTCAGGGAGGCTGCTGACCCCTTACAAATTCT
CTTTATAAGAGTTCAAATGGCTTCTTCCACAGATGTCAAACCACCACTGTTCAAAGTGAC
TGTCCCCCGTGGATCGCAGAAACAGCCCATTTCTTTTGAGAACCCGTGTGACTTGCTCTA
TGGGACCCTCGGTAACTTTTGCTGGGTGCAGAGCAGATGTTAACTTTTTTTTGTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476450|emb|CAH18215.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476450|emb|CAH18215.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               673-792, + strand, RNAz p=0.838047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               673-792, + strand, RNAz p=0.838047

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017748, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017748, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               121-338, gnl|bosTau2|chr19 (35845984-35845767)
               

               
               121-338, gnl|Hg17|chr17 (34216760-34216543)
               

               
               121-338, gnl|Mm7|chr11 (97861807-97861608)
               


               
               595-941, gnl|bosTau2|chr19 (35841310-35840963)
               

               
               595-941, gnl|Hg17|chr17 (34211990-34211655)
               

               
               595-941, gnl|Mm7|chr11 (97856514-97856156)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-338, gnl|bosTau2|chr19 (35845984-35845767)
               

               
               121-338, gnl|Hg17|chr17 (34216760-34216543)
               

               
               121-338, gnl|Mm7|chr11 (97861807-97861608)
               


               
               595-941, gnl|bosTau2|chr19 (35841310-35840963)
               

               
               595-941, gnl|Hg17|chr17 (34211990-34211655)
               

               
               595-941, gnl|Mm7|chr11 (97856514-97856156)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               fat (0.147427)

	121-338, gnl\|bosTau2\|chr19 (35845984-35845767)
	121-338, gnl\|Hg17\|chr17 (34216760-34216543)
	121-338, gnl\|Mm7\|chr11 (97861807-97861608)

	595-941, gnl\|bosTau2\|chr19 (35841310-35840963)
	595-941, gnl\|Hg17\|chr17 (34211990-34211655)
	595-941, gnl\|Mm7\|chr11 (97856514-97856156)