Ss1.1-Utr1-UTR01D070085.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGAGGCCCCCCACCATGGCACGGGTCACCCCGAGTCAGCTGGTGAGCATGCCCTAGAG CTACCTGCCCCCGCTAGCGCTTCACCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAG GATAAAGGACAAAAGAGGTCAGCCGGAGGCTCCAGCCCCGAAGGTGGAGAAGATTCCGAC CGAGAAGATGGAAATTACTGCCCTCCTGTCAAACGAGAAAGAACGTCCTCTTTAACACAG TTCCCACCTTCACAGTCAGTATCAAAAAACAATGTTTTTATGCCATCAACCTTCTGCGAG CCATCTGCAGGCAATTCTGACTCAGAACCAGAGGAAAAGAGCAGTGGATTCCGGTTGAAG CCGCCAACACTGATCCACGGCCAGGCACCCAGTGCAGGTCTGCCGAGCCAGAAGCCCAAG GAGCAGCAGCGGAGCGTGCTTCGCCCAGCAGTGTTACAAGCTCCTCAGCCAAAGGCACTC TCACAGACCGTCCCGAGCACCGGCACCAACGGGGTCAGTGTCCCGGCAGACTGCACAGGG GCAGTGACATTGGCCTCACCTGACAACCCCGCCCGGAGAAGTCCATCTGATGAGGTGCCA GCACTTGAGGAGAAAGAGTCCCAGAAAAATGAATCCAGCAATACTTCTGAGGAGGAGAAC TGTGAGAAGAAGGAGCAAGTTGCACAGCAGGCATTTGTGTTTGGGCAGAACCTGAGGGAC AGAGTTAAGTTAATCAATGAGAACACTGAAGTAGCGGACATGGAGAATGCCGGACACCCC AGTTCAGAAACACCAACTGCCACCAACTACTTCCTTCAGTATATCAGCTCCAGTTTAGAG AATTCAACCAATAGTGCCGACGCCGCCAGCAGCAAGTTTATATTTGGCCAGAACATGAGT GAACGCGTGTTGAGTCCGCCCAAACTAAACGAGGTCAGTTCCGATGCCAACAGAGAAACC ATAGCTGCTGAGTCTGGGTCCGAGTCCTCGTCCCAAGAGGCCACCCCTGAGAAAGAGTCC CTGGCCGAGTCGGCAGCCGCCTACACAAAGGCAACGGCGCGGAAGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGAGGCCCCCCACCATGGCACGGGTCACCCCGAGTCAGCTGGTGAGCATGCCCTAGAG CTACCTGCCCCCGCTAGCGCTTCACCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAG GATAAAGGACAAAAGAGGTCAGCCGGAGGCTCCAGCCCCGAAGGTGGAGAAGATTCCGAC CGAGAAGATGGAAATTACTGCCCTCCTGTCAAACGAGAAAGAACGTCCTCTTTAACACAG TTCCCACCTTCACAGTCAGTATCAAAAAACAATGTTTTTATGCCATCAACCTTCTGCGAG CCATCTGCAGGCAATTCTGACTCAGAACCAGAGGAAAAGAGCAGTGGATTCCGGTTGAAG CCGCCAACACTGATCCACGGCCAGGCACCCAGTGCAGGTCTGCCGAGCCAGAAGCCCAAG GAGCAGCAGCGGAGCGTGCTTCGCCCAGCAGTGTTACAAGCTCCTCAGCCAAAGGCACTC TCACAGACCGTCCCGAGCACCGGCACCAACGGGGTCAGTGTCCCGGCAGACTGCACAGGG GCAGTGACATTGGCCTCACCTGACAACCCCGCCCGGAGAAGTCCATCTGATGAGGTGCCA GCACTTGAGGAGAAAGAGTCCCAGAAAAATGAATCCAGCAATACTTCTGAGGAGGAGAAC TGTGAGAAGAAGGAGCAAGTTGCACAGCAGGCATTTGTGTTTGGGCAGAACCTGAGGGAC AGAGTTAAGTTAATCAATGAGAACACTGAAGTAGCGGACATGGAGAATGCCGGACACCCC AGTTCAGAAACACCAACTGCCACCAACTACTTCCTTCAGTATATCAGCTCCAGTTTAGAG AATTCAACCAATAGTGCCGACGCCGCCAGCAGCAAGTTTATATTTGGCCAGAACATGAGT GAACGCGTGTTGAGTCCGCCCAAACTAAACGAGGTCAGTTCCGATGCCAACAGAGAAACC ATAGCTGCTGAGTCTGGGTCCGAGTCCTCGTCCCAAGAGGCCACCCCTGAGAAAGAGTCC CTGGCCGAGTCGGCAGCCGCCTACACAAAGGCAACGGCGCGGAAGTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 487-610, gnl|bosTau2|chr7 (13184791-13184914) | |
| 487-610, gnl|canFam2|chr20 (57108965-57108817) | |
| 487-610, gnl|dasNov1|scaffold_17420 (972-820) | |
| 487-610, gnl|echTel1|scaffold_317550 (11134-10967) | |
| 487-610, gnl|galGal2|chr28 (711965-711838) | |
| 487-610, gnl|hg17|chr19 (5882413-5882569) | |
| 487-610, gnl|Hg17|chr19 (5882546-5882414) | |
| 487-610, gnl|loxAfr1|scaffold_25630 (6477-6632) | |
| 487-610, gnl|mm7|chr17 (54912722-54912570) | |
| 487-610, gnl|Mm7|chr17 (54912587-54912719) | |
| 487-610, gnl|monDom2|scaffold_85 (3898741-3898888) | |
| 487-610, gnl|oryCun1|scaffold_196917 (12009-12172) | |
| 487-610, gnl|panTro1|chr20 (6228727-6228883) | |
| 487-610, gnl|rheMac2|chr19 (5834285-5834441) | |
| 487-610, gnl|rn3|chrUn (25076351-25076505) | |
| 728-833, gnl|bosTau2|chr7 (13187692-13187797) | |
| 728-833, gnl|canFam2|chr20 (57112251-57112131) | |
| 728-833, gnl|dasNov1|scaffold_17420 (4426-4306) | |
| 728-833, gnl|echTel1|scaffold_112852 (319-204) | |
| 728-833, gnl|galGal2|chr28 (714763-714650) | |
| 728-833, gnl|hg17|chr19 (5876636-5876756) | |
| 728-833, gnl|Hg17|chr19 (5876750-5876645) | |
| 728-833, gnl|mm7|chr17 (54916801-54916688) | |
| 728-833, gnl|Mm7|chr17 (54916688-54916793) | |
| 728-833, gnl|monDom2|scaffold_85 (3892347-3892467) | |
| 728-833, gnl|oryCun1|scaffold_196917 (8329-8446) | |
| 728-833, gnl|panTro1|chr20 (6222839-6222959) | |
| 728-833, gnl|rheMac2|chr19 (5828450-5828570) | |
| 728-833, gnl|rn3|chrUn (25072195-25072311) | |
| 912-1031, gnl|bosTau2|chr7 (13189957-13190078) | |
| 912-1031, gnl|canFam2|chr20 (57114792-57114664) | |
| 912-1031, gnl|dasNov1|scaffold_17420 (8868-8727) | |
| 912-1031, gnl|echTel1|scaffold_23795 (120-4) | |
| 912-1031, gnl|fr1|chrUn (101413020-101412900) | |
| 912-1031, gnl|galGal2|chr28 (717573-717468) | |
| 912-1031, gnl|hg17|chr19 (5874793-5874926) | |
| 912-1031, gnl|Hg17|chr19 (5874926-5874805) | |
| 912-1031, gnl|mm7|chr17 (54917785-54917680) | |
| 912-1031, gnl|Mm7|chr17 (54917678-54917797) | |
| 912-1031, gnl|monDom2|scaffold_85 (3881194-3881304) | |
| 912-1031, gnl|panTro1|chr20 (6220997-6221130) | |
| 912-1031, gnl|rheMac2|chr19 (5826652-5826785) | |
| 912-1031, gnl|rn3|chrUn (25071194-25071320) | |
| 912-1031, gnl|tetNig1|chr15_random (2582812-2582911) | |
| 912-1031, gnl|xenTro1|scaffold_87 (1919207-1919103) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 487-610, gnl|bosTau2|chr7 (13184791-13184914) | |
| 487-610, gnl|canFam2|chr20 (57108965-57108817) | |
| 487-610, gnl|dasNov1|scaffold_17420 (972-820) | |
| 487-610, gnl|echTel1|scaffold_317550 (11134-10967) | |
| 487-610, gnl|galGal2|chr28 (711965-711838) | |
| 487-610, gnl|hg17|chr19 (5882413-5882569) | |
| 487-610, gnl|Hg17|chr19 (5882546-5882414) | |
| 487-610, gnl|loxAfr1|scaffold_25630 (6477-6632) | |
| 487-610, gnl|mm7|chr17 (54912722-54912570) | |
| 487-610, gnl|Mm7|chr17 (54912587-54912719) | |
| 487-610, gnl|monDom2|scaffold_85 (3898741-3898888) | |
| 487-610, gnl|oryCun1|scaffold_196917 (12009-12172) | |
| 487-610, gnl|panTro1|chr20 (6228727-6228883) | |
| 487-610, gnl|rheMac2|chr19 (5834285-5834441) | |
| 487-610, gnl|rn3|chrUn (25076351-25076505) | |
| 728-833, gnl|bosTau2|chr7 (13187692-13187797) | |
| 728-833, gnl|canFam2|chr20 (57112251-57112131) | |
| 728-833, gnl|dasNov1|scaffold_17420 (4426-4306) | |
| 728-833, gnl|echTel1|scaffold_112852 (319-204) | |
| 728-833, gnl|galGal2|chr28 (714763-714650) | |
| 728-833, gnl|hg17|chr19 (5876636-5876756) | |
| 728-833, gnl|Hg17|chr19 (5876750-5876645) | |
| 728-833, gnl|mm7|chr17 (54916801-54916688) | |
| 728-833, gnl|Mm7|chr17 (54916688-54916793) | |
| 728-833, gnl|monDom2|scaffold_85 (3892347-3892467) | |
| 728-833, gnl|oryCun1|scaffold_196917 (8329-8446) | |
| 728-833, gnl|panTro1|chr20 (6222839-6222959) | |
| 728-833, gnl|rheMac2|chr19 (5828450-5828570) | |
| 728-833, gnl|rn3|chrUn (25072195-25072311) | |
| 912-1031, gnl|bosTau2|chr7 (13189957-13190078) | |
| 912-1031, gnl|canFam2|chr20 (57114792-57114664) | |
| 912-1031, gnl|dasNov1|scaffold_17420 (8868-8727) | |
| 912-1031, gnl|echTel1|scaffold_23795 (120-4) | |
| 912-1031, gnl|fr1|chrUn (101413020-101412900) | |
| 912-1031, gnl|galGal2|chr28 (717573-717468) | |
| 912-1031, gnl|hg17|chr19 (5874793-5874926) | |
| 912-1031, gnl|Hg17|chr19 (5874926-5874805) | |
| 912-1031, gnl|mm7|chr17 (54917785-54917680) | |
| 912-1031, gnl|Mm7|chr17 (54917678-54917797) | |
| 912-1031, gnl|monDom2|scaffold_85 (3881194-3881304) | |
| 912-1031, gnl|panTro1|chr20 (6220997-6221130) | |
| 912-1031, gnl|rheMac2|chr19 (5826652-5826785) | |
| 912-1031, gnl|rn3|chrUn (25071194-25071320) | |
| 912-1031, gnl|tetNig1|chr15_random (2582812-2582911) | |
| 912-1031, gnl|xenTro1|scaffold_87 (1919207-1919103) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| duo (0.172801) | |
| cag (0.151194) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| cag (0.151194) | |
| tra (0.123092) | |
| cty (0.10408) |