Non-Coding RNA Search

Ss1.1-Utr1-UTR01D070087.5

Sequence:


               
               ACTACGTTTTCCAGAGAGAAAGCCCCGGAAAGTGGAAGAGGGGCGTTTGCAGACAGGCCC
ACATCCCCCATCCAAATCATGACGGTGTCCACAGCCGCTGCCCCAGCCGAGATCATCCCT
CCAGAACCCCAGGAAATGCCCATGGGAAGGACTGTCCTCAAAGTCACCCCAGAGAAGCAG
ACTGTTCCAGCTCCAGTCCGGAAGTACAACTCCAATGCCAACATCATAACCACGGAAGAC
AATAAAATTCATATTCATTTGGGTTCTCAGTTTAAGCGCTCCCCTGGGACGTCAGCTGAA
GGAGCAAGTCCAGTGATTACTGTCCGACCTGTCAGCGTGACAGCTGAAAAGGAGGTGGCC
ACTGGCACGGTCCTTCGCTCTCCCAGGAACCATCTGTCCTCACGCCCGGGTGCCAGCAAA
GTGACCAGCACCATCACCATCACACCAGTCACAACCTCGTCTGCCCGAGGAACCCAGTCA
GTGTCTGGACCAGACGGGTCATCCCAGCGACCTACCCCTACCCGCATTCCTATGTCAAAA
GGTATGAAAGCAGGAAAGCCAGTAGTGGCAGCCCCAGGAGCAGGAAATCTGACCAAATTC
GAGCCTCGAGCTGAGACTCAGTCTATGAAAATAGAGCTGAAGAAGTCTGCGGCCGGCAGC
GCCACCTCTCCTGGAGGGGGAAGGGCTGAGGGCAGTGGCTGAGGGGGTATGTTGTGCAGG
GGGCTTCCGCTGCTGTGAGAGCGAACCTCCGTCCATTCATGCCAACCCTTTACATGTACT
AATTTAAGGTTTTTTTTTAAAGACTTGTTCATAAAATAATCAACTAACAGCCATGTATCT
TTCCTATTTTGTGAATTTGTTTTGATGCTGGAGAACAGAACTAATGAGCCAAACTACTGT
ATGCGCTGTGCTTTGTGGGGGATGCTGGGTCTAAGGCAGGGCCTGACTTCTCGACCCAGT
GTTGATTCTAGAAAATGGACCCATCAGTTAAACCAGTAAGAGATGGGTCCTGGATCACAT
CTTCTCCCAAGCCAGCTCCCATATTTCCTAATTGAAAATCAAATTTCATAGGCCTGGTTC
CACAGTAATTGATTTTTCAAGAACCCTCTTATGAAATAGGAAATAGTTTTAACAATTGTC
GTTGGCCTCTATCAAATTCCAAATCTGCTTCATGTGCTAAAAAACAAAAAGCAAAAAACA
TCTAGTTATCACAGGGCCTGGACCTCTTAAGTTTTGCAAAAACAAAGCCTCTGAGATGAT
TTCAGGAAACAATTAAATGTGAAATAAAATGAAAATGAAATGTGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACGTTTTCCAGAGAGAAAGCCCCGGAAAGTGGAAGAGGGGCGTTTGCAGACAGGCCC
ACATCCCCCATCCAAATCATGACGGTGTCCACAGCCGCTGCCCCAGCCGAGATCATCCCT
CCAGAACCCCAGGAAATGCCCATGGGAAGGACTGTCCTCAAAGTCACCCCAGAGAAGCAG
ACTGTTCCAGCTCCAGTCCGGAAGTACAACTCCAATGCCAACATCATAACCACGGAAGAC
AATAAAATTCATATTCATTTGGGTTCTCAGTTTAAGCGCTCCCCTGGGACGTCAGCTGAA
GGAGCAAGTCCAGTGATTACTGTCCGACCTGTCAGCGTGACAGCTGAAAAGGAGGTGGCC
ACTGGCACGGTCCTTCGCTCTCCCAGGAACCATCTGTCCTCACGCCCGGGTGCCAGCAAA
GTGACCAGCACCATCACCATCACACCAGTCACAACCTCGTCTGCCCGAGGAACCCAGTCA
GTGTCTGGACCAGACGGGTCATCCCAGCGACCTACCCCTACCCGCATTCCTATGTCAAAA
GGTATGAAAGCAGGAAAGCCAGTAGTGGCAGCCCCAGGAGCAGGAAATCTGACCAAATTC
GAGCCTCGAGCTGAGACTCAGTCTATGAAAATAGAGCTGAAGAAGTCTGCGGCCGGCAGC
GCCACCTCTCCTGGAGGGGGAAGGGCTGAGGGCAGTGGCTGAGGGGGTATGTTGTGCAGG
GGGCTTCCGCTGCTGTGAGAGCGAACCTCCGTCCATTCATGCCAACCCTTTACATGTACT
AATTTAAGGTTTTTTTTTAAAGACTTGTTCATAAAATAATCAACTAACAGCCATGTATCT
TTCCTATTTTGTGAATTTGTTTTGATGCTGGAGAACAGAACTAATGAGCCAAACTACTGT
ATGCGCTGTGCTTTGTGGGGGATGCTGGGTCTAAGGCAGGGCCTGACTTCTCGACCCAGT
GTTGATTCTAGAAAATGGACCCATCAGTTAAACCAGTAAGAGATGGGTCCTGGATCACAT
CTTCTCCCAAGCCAGCTCCCATATTTCCTAATTGAAAATCAAATTTCATAGGCCTGGTTC
CACAGTAATTGATTTTTCAAGAACCCTCTTATGAAATAGGAAATAGTTTTAACAATTGTC
GTTGGCCTCTATCAAATTCCAAATCTGCTTCATGTGCTAAAAAACAAAAAGCAAAAAACA
TCTAGTTATCACAGGGCCTGGACCTCTTAAGTTTTGCAAAAACAAAGCCTCTGAGATGAT
TTCAGGAAACAATTAAATGTGAAATAAAATGAAAATGAAATGTGGAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-483, gnl|bosTau2|chr9 (7348616-7349101)
               

               
               1-483, gnl|Hg17|chr6 (76079318-76078833)
               

               
               1-483, gnl|Mm7|chr9 (79894770-79894282)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-483, gnl|bosTau2|chr9 (7348616-7349101)
               

               
               1-483, gnl|Hg17|chr6 (76079318-76078833)
               

               
               1-483, gnl|Mm7|chr9 (79894770-79894282)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-483, gnl\|bosTau2\|chr9 (7348616-7349101)
	1-483, gnl\|Hg17\|chr6 (76079318-76078833)
	1-483, gnl\|Mm7\|chr9 (79894770-79894282)