Ss1.1-Utr1-UTR01D070089.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACGCCTCTTGCCTGGCAGCCGATCTGTCTCCCTGCTAGAAATCCTCTCCAGCCGGATG GCCCTGGCCCCGCCCTGCGACTGTTGCCTGGCTGGCTTCTGGTCGGCGGGCGGAGGGAGG GCCTAGGCGGTGTGCGTTGGCGGGAGGGAAGTCAATTTCCCTTGTCTCGCCTCCGGCCGC CCGTGGCGGGAGGAAGCAGGGGCTAGGTCAGTGGACAGCATGGCAGGAGCTCCGGATGAG CGTGGCCCGGGCCCCGCGGCTAGGGAACCACTGCAGCAGCAACACGTCGGATGCCAAGTC TTCCCCGAGCGGCTGGCCCAGGGGAAGCCCCAGCAAGGGTTCCTCTCCAGCTTCTTTACC GACAACCAGAAGTGCCAGCTGATGCTCCTGAAGACGCTGGAGACAAATCCATATGTCAAA CTTCTACTTGATGCCATGAAGCATTCAGGTTGCGCTGTGAGCAAAGAAAGACACTTTTCC TGTGAAGATTGTAATGGAAATGTCAGTGGGGGTTTTGACGCTTCTGTGTCTCAGATTGTT TTGTGCCAGAATAACATCCGGAATCAGGCTCATATGAACAGAGTGGTCACCCATGAACTC ATTCATGCATTTGATCATTGTCGTGCTCATGTGGACTGGTTCACCAATATCAGACATTTG GCCTGTTCTGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGCTCACTTTTAAATGAAATA TTCAGGTTACATTTTGGATTAAAACAACATCATCAGACTTGTGTGAGAGACAGAGCCATT CTTTCTATCCTGGCTGTTAGGAACATAAGCAGAGAAGTCGCTCAGAAGGCTGTTGATGAA GTTTTTGAATCTTGTTTCAATGACCACGAACCTTTTGGAAGGATCCCTCATAACCAGACC TATGCAAGATACGCTCATAGAGACTTTCAGAACCGGGATCGGTACTATTCAAATATATGA AGGCAGTGACACTTTTATATCACAGAGCTGCAGTGATCATGAAAAAAAAAATTGTGGTTC CCAAGTGGACAAACATATAAAACGTAAGTCATCAATTAAATACACAGAAGACGCCAAAGA TGCTGATTCTAGCATATGATCAGGAAAAGTAACTGTGGTAAGAAATGAAACTGCCTTGGG AGTTCCTGCCACGGCACAGTGGTTAAGAATCTGACTGTAGCGGCTCGGGTCACTCCAGAG GTGTGCACTCGATCCCCAGCCTGGCGCAGTGGGTTAAAGTGGTGTTGTGGCAGTTGCAGC TCAGGTTCAGTCCTTGGTCTGGGAGCTGGGTGTGGCCATTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACGCCTCTTGCCTGGCAGCCGATCTGTCTCCCTGCTAGAAATCCTCTCCAGCCGGATG GCCCTGGCCCCGCCCTGCGACTGTTGCCTGGCTGGCTTCTGGTCGGCGGGCGGAGGGAGG GCCTAGGCGGTGTGCGTTGGCGGGAGGGAAGTCAATTTCCCTTGTCTCGCCTCCGGCCGC CCGTGGCGGGAGGAAGCAGGGGCTAGGTCAGTGGACAGCATGGCAGGAGCTCCGGATGAG CGTGGCCCGGGCCCCGCGGCTAGGGAACCACTGCAGCAGCAACACGTCGGATGCCAAGTC TTCCCCGAGCGGCTGGCCCAGGGGAAGCCCCAGCAAGGGTTCCTCTCCAGCTTCTTTACC GACAACCAGAAGTGCCAGCTGATGCTCCTGAAGACGCTGGAGACAAATCCATATGTCAAA CTTCTACTTGATGCCATGAAGCATTCAGGTTGCGCTGTGAGCAAAGAAAGACACTTTTCC TGTGAAGATTGTAATGGAAATGTCAGTGGGGGTTTTGACGCTTCTGTGTCTCAGATTGTT TTGTGCCAGAATAACATCCGGAATCAGGCTCATATGAACAGAGTGGTCACCCATGAACTC ATTCATGCATTTGATCATTGTCGTGCTCATGTGGACTGGTTCACCAATATCAGACATTTG GCCTGTTCTGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGCTCACTTTTAAATGAAATA TTCAGGTTACATTTTGGATTAAAACAACATCATCAGACTTGTGTGAGAGACAGAGCCATT CTTTCTATCCTGGCTGTTAGGAACATAAGCAGAGAAGTCGCTCAGAAGGCTGTTGATGAA GTTTTTGAATCTTGTTTCAATGACCACGAACCTTTTGGAAGGATCCCTCATAACCAGACC TATGCAAGATACGCTCATAGAGACTTTCAGAACCGGGATCGGTACTATTCAAATATATGA AGGCAGTGACACTTTTATATCACAGAGCTGCAGTGATCATGAAAAAAAAAATTGTGGTTC CCAAGTGGACAAACATATAAAACGTAAGTCATCAATTAAATACACAGAAGACGCCAAAGA TGCTGATTCTAGCATATGATCAGGAAAAGTAACTGTGGTAAGAAATGAAACTGCCTTGGG AGTTCCTGCCACGGCACAGTGGTTAAGAATCTGACTGTAGCGGCTCGGGTCACTCCAGAG GTGTGCACTCGATCCCCAGCCTGGCGCAGTGGGTTAAAGTGGTGTTGTGGCAGTTGCAGC TCAGGTTCAGTCCTTGGTCTGGGAGCTGGGTGTGGCCATTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 39-195, - strand, RNAz p=0.999802 | |
| 289-406, - strand, RNAz p=0.99914 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-195, - strand, RNAz p=0.999802 | |
| 289-406, - strand, RNAz p=0.99914 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-406, gnl|bosTau2|chr5 (34501751-34502150) | |
| 1-406, gnl|Hg17|chr12 (56621550-56621938) | |
| 1-406, gnl|Mm7|chr10 (126398905-126398580) | |
| 529-674, gnl|bosTau2|chr5 (34513974-34514119) | |
| 529-674, gnl|canFam2|chr10 (4975016-4975199) | |
| 529-674, gnl|danRer3|chr4 (777223-777380) | |
| 529-674, gnl|dasNov1|scaffold_58015 (8713-8888) | |
| 529-674, gnl|echTel1|scaffold_321104 (4259-4074) | |
| 529-674, gnl|fr1|chrUn (191216575-191216756) | |
| 529-674, gnl|galGal2|chr1 (28361742-28361916) | |
| 529-674, gnl|hg17|chr12 (56631790-56631965) | |
| 529-674, gnl|Hg17|chr12 (56631802-56631947) | |
| 529-674, gnl|loxAfr1|scaffold_76122 (9297-9112) | |
| 529-674, gnl|mm7|chr10 (126391860-126391685) | |
| 529-674, gnl|Mm7|chr10 (126391846-126391701) | |
| 529-674, gnl|monDom2|scaffold_283 (373065-373253) | |
| 529-674, gnl|oryCun1|scaffold_166466 (9095-9274) | |
| 529-674, gnl|panTro1|chr10 (57877920-57878095) | |
| 529-674, gnl|rheMac2|chr11 (55048982-55049157) | |
| 529-674, gnl|rn3|chr7_random (609355-609180) | |
| 529-674, gnl|tetNig1|chrUn_random (55006716-55006879) | |
| 529-674, gnl|xenTro1|scaffold_66 (2710512-2710683) | |
| 750-1137, gnl|bosTau2|chr5 (34523299-34523667) | |
| 750-1137, gnl|Hg17|chr12 (56636730-56637118) | |
| 750-1137, gnl|Mm7|chr10 (126385179-126384810) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-406, gnl|bosTau2|chr5 (34501751-34502150) | |
| 1-406, gnl|Hg17|chr12 (56621550-56621938) | |
| 1-406, gnl|Mm7|chr10 (126398905-126398580) | |
| 529-674, gnl|bosTau2|chr5 (34513974-34514119) | |
| 529-674, gnl|canFam2|chr10 (4975016-4975199) | |
| 529-674, gnl|danRer3|chr4 (777223-777380) | |
| 529-674, gnl|dasNov1|scaffold_58015 (8713-8888) | |
| 529-674, gnl|echTel1|scaffold_321104 (4259-4074) | |
| 529-674, gnl|fr1|chrUn (191216575-191216756) | |
| 529-674, gnl|galGal2|chr1 (28361742-28361916) | |
| 529-674, gnl|hg17|chr12 (56631790-56631965) | |
| 529-674, gnl|Hg17|chr12 (56631802-56631947) | |
| 529-674, gnl|loxAfr1|scaffold_76122 (9297-9112) | |
| 529-674, gnl|mm7|chr10 (126391860-126391685) | |
| 529-674, gnl|Mm7|chr10 (126391846-126391701) | |
| 529-674, gnl|monDom2|scaffold_283 (373065-373253) | |
| 529-674, gnl|oryCun1|scaffold_166466 (9095-9274) | |
| 529-674, gnl|panTro1|chr10 (57877920-57878095) | |
| 529-674, gnl|rheMac2|chr11 (55048982-55049157) | |
| 529-674, gnl|rn3|chr7_random (609355-609180) | |
| 529-674, gnl|tetNig1|chrUn_random (55006716-55006879) | |
| 529-674, gnl|xenTro1|scaffold_66 (2710512-2710683) | |
| 750-1137, gnl|bosTau2|chr5 (34523299-34523667) | |
| 750-1137, gnl|Hg17|chr12 (56636730-56637118) | |
| 750-1137, gnl|Mm7|chr10 (126385179-126384810) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cte (0.29274) | |
| spl (0.286369) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| cly (0.120642) | |
| pgl (0.118483) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| spl (0.286369) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| cly (0.120642) | |
| pgl (0.118483) |